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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0263900 |
| Transcript ID | LotjaGi2g1v0263900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Oligopeptide transporter, putative; TAIR: AT4G27730.1 oligopeptide transporter 1; Swiss-Prot: sp|Q9T095|OPT6_ARATH Oligopeptide transporter 6; TrEMBL-Plants: tr|I1KAW1|I1KAW1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0263900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:73338108..73339697) extracted from Lotus japonicus Gifu genome v1.2.
GTGTCTTTCCTACGCATATTTTGACTGCAGTGAAGCTCATATACAGAAGAAAACTCGATTTACTTCCAGCTATATTGCTC ATGCTCGCCACTAAGCTGTTGGGATTTGGCTGGGCAGGACTGTTTAGGAAATTTCTGGTTGAGCCAGGGGAGATGTGGTG GCCTTCTAATCTAGTGCAGGTCTCATTATTCAGGGCTCTACACGAGACAGACAAATTGTTTCAAATGGTGATGACATCTT TCTCTTGGGTATTTTGGCTTGCTCCCAAGTCTATCCTAGTCCAACAACTTGGTTCTGGCATGAAGGGTCTTGTTGGCATT GATGCACTTGGATTTGATTGGTCTGCGATTTCTTCGTACCTTGGTAGTCCACTAGCTAGTCCATGGTTCGCCACTGCAAA CATTGCTGTTGGATTTTTTATGGTCATGTATGTGATGACACCAAAGAGCGGGAGCGCATTCTTTGCAATGACTTATGGCC TTGGATTCGTGGCGCTTTCTGCTACGATAGTGCATGTTCTGCTCTTTCATGGAAGGGAAATATGGATGCAGAGTAAAAGG GCATTTGAAGATAGTACAAAAATTGACATACACACAAGACTTATGAGGAGGTACAAATCAGTCCCCCAGTGGTGGTTTCA CATCATTCTAGTGTCGAACATTGCTCTGATTGTTTTTATCTGTGAGTACTACAACGAATCACTTCAGTTACCTTGGTGGG GTGTTTTGCTAACTTGTGCAATTTCCATTTCCTTCACTCTTCCAATCGGTATTATAGCAGCCACTACAAATCAGGCACCA GGTTTAAACATTATAGCAGAACACATCATTGGCTACATGTATCCAGAGCGCCCTGTGGCTAACATGTGCTTTAAGGTTTA TGGTTACATTAGCATGGCTCAAGCACTAACATTTTTGGCAGACTTCAAACTCGGTCATTATATGAAGATTCCACCAAGAA CAATGTTCATGGCACAGGTGGTAGGAACAATCATATCAGTAGTTGTGTCCACAATAACTGCATGGTGGTTGATGGGGACA ATCCCTTTCCTTTGTGACCCTTCCAAATTTTCACCTGATAGCACCTGGCAATGCCCAATGGAAAATGTCTTCTATGATGC ATCTGTTATCTGGGGTCGTCTTGGACCACGAAGGCTATTTGGAGACGAAGGTGTATATGGCAAAATGGATTTCTTCTTGC TTGGTGGAGCCATTGCTCCTCTTCTAGTTTGGCTTGCTCACAAGGCCTTCCCAGATAAAGAATGGATACGCCTAATTCAC ATGCCTATCATGCTTGGTGCTACATCAATGATGTCCCCTGCCACTTCAGATAACTACACTAGTTGGTTGTTTGTTGCGTT TCTCTCAGGGTATGTGATTTTTAGGTACAAACAACAATGGTGGACGCGCTACAATTATGTTATGTCTGGTGGTCTTGATG CTGGAACTGCCTTTATGACAATTTTTCTGTTTCTTATTCTGGGAACTAATGGCATTAGACTTAGCTGGTAGGGAAATAGT AATGTAGATGGGTGCCCCTTGGCTCGTTGTCCTACTACAAAGGGCATTGCAATTGGAAGTTGCCCTGTGC
CDS sequence (LotjaGi2g1v0263900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTCGCCACTAAGCTGTTGGGATTTGGCTGGGCAGGACTGTTTAGGAAATTTCTGGTTGAGCCAGGGGAGATGTGGTG GCCTTCTAATCTAGTGCAGGTCTCATTATTCAGGGCTCTACACGAGACAGACAAATTGTTTCAAATGGTGATGACATCTT TCTCTTGGGTATTTTGGCTTGCTCCCAAGTCTATCCTAGTCCAACAACTTGGTTCTGGCATGAAGGGTCTTGTTGGCATT GATGCACTTGGATTTGATTGGTCTGCGATTTCTTCGTACCTTGGTAGTCCACTAGCTAGTCCATGGTTCGCCACTGCAAA CATTGCTGTTGGATTTTTTATGGTCATGTATGTGATGACACCAAAGAGCGGGAGCGCATTCTTTGCAATGACTTATGGCC TTGGATTCGTGGCGCTTTCTGCTACGATAGTGCATGTTCTGCTCTTTCATGGAAGGGAAATATGGATGCAGAGTAAAAGG GCATTTGAAGATAGTACAAAAATTGACATACACACAAGACTTATGAGGAGGTACAAATCAGTCCCCCAGTGGTGGTTTCA CATCATTCTAGTGTCGAACATTGCTCTGATTGTTTTTATCTGTGAGTACTACAACGAATCACTTCAGTTACCTTGGTGGG GTGTTTTGCTAACTTGTGCAATTTCCATTTCCTTCACTCTTCCAATCGGTATTATAGCAGCCACTACAAATCAGGCACCA GGTTTAAACATTATAGCAGAACACATCATTGGCTACATGTATCCAGAGCGCCCTGTGGCTAACATGTGCTTTAAGGTTTA TGGTTACATTAGCATGGCTCAAGCACTAACATTTTTGGCAGACTTCAAACTCGGTCATTATATGAAGATTCCACCAAGAA CAATGTTCATGGCACAGGTGGTAGGAACAATCATATCAGTAGTTGTGTCCACAATAACTGCATGGTGGTTGATGGGGACA ATCCCTTTCCTTTGTGACCCTTCCAAATTTTCACCTGATAGCACCTGGCAATGCCCAATGGAAAATGTCTTCTATGATGC ATCTGTTATCTGGGGTCGTCTTGGACCACGAAGGCTATTTGGAGACGAAGGTGTATATGGCAAAATGGATTTCTTCTTGC TTGGTGGAGCCATTGCTCCTCTTCTAGTTTGGCTTGCTCACAAGGCCTTCCCAGATAAAGAATGGATACGCCTAATTCAC ATGCCTATCATGCTTGGTGCTACATCAATGATGTCCCCTGCCACTTCAGATAACTACACTAGTTGGTTGTTTGTTGCGTT TCTCTCAGGGTATGTGATTTTTAGGTACAAACAACAATGGTGGACGCGCTACAATTATGTTATGTCTGGTGGTCTTGATG CTGGAACTGCCTTTATGACAATTTTTCTGTTTCTTATTCTGGGAACTAATGGCATTAGACTTAGCTGGTAG
Protein sequence (LotjaGi2g1v0263900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLATKLLGFGWAGLFRKFLVEPGEMWWPSNLVQVSLFRALHETDKLFQMVMTSFSWVFWLAPKSILVQQLGSGMKGLVGI DALGFDWSAISSYLGSPLASPWFATANIAVGFFMVMYVMTPKSGSAFFAMTYGLGFVALSATIVHVLLFHGREIWMQSKR AFEDSTKIDIHTRLMRRYKSVPQWWFHIILVSNIALIVFICEYYNESLQLPWWGVLLTCAISISFTLPIGIIAATTNQAP GLNIIAEHIIGYMYPERPVANMCFKVYGYISMAQALTFLADFKLGHYMKIPPRTMFMAQVVGTIISVVVSTITAWWLMGT IPFLCDPSKFSPDSTWQCPMENVFYDASVIWGRLGPRRLFGDEGVYGKMDFFLLGGAIAPLLVWLAHKAFPDKEWIRLIH MPIMLGATSMMSPATSDNYTSWLFVAFLSGYVIFRYKQQWWTRYNYVMSGGLDAGTAFMTIFLFLILGTNGIRLSW
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 22 | 22 | - | – | |
| Pfam | 1 | 121 | 121 | 1.2E-20 | ||
| PANTHER | 1 | 45 | 45 | 2.5E-253 | – | |
| PANTHER | 1 | 45 | 45 | 2.5E-253 | – | |
| Phobius | 1 | 5 | 5 | - | – | |
| Phobius | 6 | 14 | 9 | - | – | |
| Phobius | 15 | 22 | 8 | - | – | |
| Phobius | 23 | 45 | 23 | - | – | |
| PANTHER | 46 | 122 | 77 | 2.5E-253 | – | |
| PANTHER | 46 | 122 | 77 | 2.5E-253 | – | |
| Phobius | 46 | 66 | 21 | - | – | |
| Phobius | 67 | 77 | 11 | - | – | |
| Phobius | 78 | 96 | 19 | - | – | |
| Phobius | 97 | 101 | 5 | - | – | |
| TMHMM | 98 | 117 | 20 | - | – | |
| Phobius | 102 | 119 | 18 | - | – | |
| Phobius | 120 | 125 | 6 | - | – | |
| Pfam | 124 | 466 | 343 | 9.2E-87 | ||
| PANTHER | 125 | 476 | 352 | 2.5E-253 | – | |
| PANTHER | 125 | 476 | 352 | 2.5E-253 | – | |
| Phobius | 126 | 148 | 23 | - | – | |
| TMHMM | 127 | 149 | 23 | - | – | |
| TIGRFAM | 129 | 468 | 340 | 2.9E-107 | ||
| Phobius | 149 | 183 | 35 | - | – | |
| TMHMM | 184 | 201 | 18 | - | – | |
| Phobius | 184 | 205 | 22 | - | – | |
| Phobius | 206 | 211 | 6 | - | – | |
| TMHMM | 211 | 233 | 23 | - | – | |
| Phobius | 212 | 234 | 23 | - | – | |
| Phobius | 235 | 265 | 31 | - | – | |
| TMHMM | 258 | 280 | 23 | - | – | |
| Phobius | 266 | 284 | 19 | - | – | |
| Phobius | 285 | 295 | 11 | - | – | |
| TMHMM | 295 | 317 | 23 | - | – | |
| Phobius | 296 | 318 | 23 | - | – | |
| Phobius | 319 | 364 | 46 | - | – | |
| TMHMM | 364 | 386 | 23 | - | – | |
| Phobius | 365 | 386 | 22 | - | – | |
| Phobius | 387 | 394 | 8 | - | – | |
| Phobius | 395 | 413 | 19 | - | – | |
| Phobius | 414 | 418 | 5 | - | – | |
| Phobius | 419 | 434 | 16 | - | – | |
| TMHMM | 419 | 434 | 16 | - | – | |
| Phobius | 435 | 445 | 11 | - | – | |
| Phobius | 446 | 467 | 22 | - | – | |
| TMHMM | 446 | 468 | 23 | - | – | |
| Phobius | 468 | 476 | 9 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi2g1v0263900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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