Transcript — View — Lotus Base

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LotjaGi2g1v0264200.1

Overview

Field	Value
Gene ID	LotjaGi2g1v0264200
Transcript ID	LotjaGi2g1v0264200.1
Related isoforms 1	LotjaGi2g1v0264200.2
Lotus japonicus genome version	Gifu v1.2
Description	Membrane-anchored ubiquitin-fold protein; TAIR: AT3G01050.1 membrane-anchored ubiquitin-fold protein 1 precursor; Swiss-Prot: sp\|Q9MAB9\|MUB1_ARATH Membrane-anchored ubiquitin-fold protein 1; TrEMBL-Plants: tr\|A0A151SZZ4\|A0A151SZZ4_CAJCA Membrane-anchored ubiquitin-fold protein 1; Found in the gene: LotjaGi2g1v0264200
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr2:73358909..73362575) extracted from Lotus japonicus Gifu genome v1.2.

AAAAATGAGAATTATATGTTGCAAGATTTAACTCTTGTATTGCATTGACCTGGTTACAGTTGAAACAGTAGGATGGTAAT GTCGGAGATGTTAAGAATGTGGGTGGTGGTGGGGGTGACATACACATGCACTTGCAAAAGTTGACCCTTTTGGGCTGTGA TGAGATGAGAAGAACATGTTCTATTCCTCTTCTATTTCATTACATGTAAAACATGGAATCATTCACCATAGATTTTGTGA GTCTTTGAAAACTCTGAAACACTCTGCTAGTGCTACCTACCCCCTTTCATTGACCTTGATGTTATTGGAAAAAGAATACA CCACTCACTTCCTTTTCTGATTGACACAATTGGCACCCGGATCAGTGATTGAACCAGCTCAAAGAAGCAGTCAAGAAGGT GTGTCATTTTTTCTAATTTCTAAACTCTTGCTGGCTTTGAAGGTCACCCAGTTGGGAATTCAAGATGAACTTGTGATTTA ATGCATGCTCATTTGAATATTGGATTGGTTTTGGTTGTAGCTGTGTAAGATTCCTTTGTCAGTGTGTTGAATTTGTCATG GATCATGATGTTTCCTTTTGTGAATTACTTGCTTGTTGTTGGATTTCAAACATTTTATTCTGTTTATTTATTTGGATACA CCCAGCTTTTTCTATTCTCAATATCCCTATATATTTTCTTATGCCAGGTTTTCTAATCAAAACATTTCATCTCTTTTCGT AGTTTCCTTTGTTTGGGACTTTACTATTTCAGATTTTGTATGTTATTTTGTTTGGGCATAGAGTGATTCGGCGAGTATGG CGGAGAGCCAAGATCAACTAGAGATCAAGTTTCGATTGAGTGACGGGTCAGATATTGGCCCCAAAAGTTTTGCTGCTGCT ACTAGAATTACAGCACTGAAAGAAAGTATTCTTGCGCAATGGCCAAAAGGTTAGCTTTTGTTGTCTTTCTTTAATTTTTT GTATATCTTTTTTGCTCTTCCTATGAATACTAAGAATCTAAGATATCTCAATGTGAGAAAATGTTATATCTTCCTGTTTG TCATGACTCATGAATGTTGTGCTGCAAATCATGAAAGATTGGTGGTTGGGTGGAGTGAATAACATGGAGGTAAAGGATCA TTATGTGGATGTATTGACATATAGAAGGGATATATTGAGATAGAAGAAGTCATGATTGACTTGATTCGAGTATATGGTTA TTATTTTTTAAGTTTGGGTGCAGATCATGCTTGTGATGATGCACTAGGGATGTAGTTCATTCTTGTGATCAGAATTGAGA GCAATGAATGAACAGTATGCTGGCTATATCAAAGACAGACATAAATTTTCATTTAATGTAATTTTATGACTTTTAAGCGT GTCAGAGATATAAATAATGTCCTGCAGATTCTAGTGCAGAAGTATGTTGAGCACATCTTTGTGTTGTACTTTAGTTTAGT TAGCTCCCTTCTTTCATTGAGAAATTGAGTAGGTTTTGCATTAATAGAAAGACATTTTCACAAATTGTATAAAAGGTCTA AGCTGACAAGATCTGGAATGTAGCAAGTGAAGCAAAGTAGAGAAGATGTGTTTGTGTTAAAATTATAGGATCTGATTGAA TTGATTTTGTCATCTTTTGAACCAATGGTGTTGTTGGTTCAAGTGGTACATACTTGATTCCCCTTAAGCAAGGTGTCGGG TTCAAGTCTTGTATATGAAAAAAACTCTGCTTAGAGAGCCTCACAAGGATGTGGATGTTCATGGCTCAAACATAATTGAC TCCCGTGGAGAATACATGTGTTAGATCAGATATCTCCCCCAATAAGTAGTTGTTAAACATATATTTCTTCTCTTTTATAC CATGCTGTCTGCCTGTTCCTCCTTGAGAGGTTCAAGATTGATGCCTTCTAAGTTTGGTGCACTTACCACATGATATTACT TTCTCAAATCCATAAATGAATTTTGAAAAATTAAGGTAGTTTCCATGTCATATGCCTTTCATGGACCTTATCATATGTGT TCACATACTAGTATATTTACAGTCATACATTTAAATGTTTGTGTAATTTGGTTCAATATATTATGAGGTCTCACTCTAAA CATTTTGCCATACATTTTAGCAATATATGAGATGTAAGATTGTGTTTCTGTTTTGAAGACAAGGAGTATGGCCCAAAAAC TGTAAAAGATGTGAAGTTAATTAATGCGGGAAAAATATTGGAGAACAACAGAACAGTGGGGGAATGCCAGAGTCCATTGT GTAATCCCCCTGGTGGAGTAACAACTATGCTTGTGGTTGTGCAACCACCAACTGTGGAGAAAGGTCTAGTAATTATTTCT TAAACATGCCAAAAGCTACTATTATTGTTGGTTGCTGTGATGCTGTCTATTTTACTTCTATGAACAGATTCAAGAAAAAA CATTATTCTTTTAAAGTTTGACTGGAGCAAGTTTCAAGTTATTGGAACAATTTTCAAAATGTATTTCTGATTTCATTTGG TTTTGGTGTTTTATCTGATCCTCATTGAAATTTTGGTCTTTTGCTCTTGAAACAGAGAAGAATGTAGCAAGTGAAGCAAA GCAGAGCAAATGTGTCTGTGTCATATTATAGGATCTGGATTGAATTGAACTGATAATATCATCTATTGAGGTGGCTAAAA TCTGCACCTATATTCATTTTTAACACAATTTTTGGCTTTCAATGATTTCCTCATTCATAAATTCTTTGGTCGCACACCTC ATAATTTCTACAGGTGAAGAGTTCTTGAGTTGGTGAAGATTGTGAAGCCAATTGTTTCTTGATTGAAATGAACTCTCTTA GTCTAGTTTGCCATGATGTCTGTGATTCAAAATGCTTCCAGAGTTGAACTGAACCAGCATGCTTTAGTTTGCTTAATGTT TGTTTATGTGGTGTTCTTATACACCAATTGAGGCAAAAGTGGCTTAGCTACCATGTACCTACACATCTCTCAACTCTCAT GAAATGGTGGTAATGGCAGTGAGACTGCAGTTTGAACGCCCCCACCTCACCCTCCCTTTGAGACTGTAGTTTGATCATTT TAATATTGTGAAATACCTTTGTTATGACATACTTTGTAGCTCAAGATCGTGATTTTGAAGACCAAGTGGAATTCAATATT GTAATTTGAAAACTAAATGTAGTCCAAGGTTGAGGTTTTAATGACTAGTTGAATTTGTGAGCTATTCATGGAAAATATTT GATATTTTTATTTGAGTTTTGAAATGTTTGTTAAGGTATGATATATTATTGAAGTTTTAAGCTTGGCTATAAACTATTAT CGTGTTTTTAGTCCCAAATTTTTGCTTTGAACATCTATAATGGGCTCTATATTAGAATATTTTTGTCCCACCAAATAGAG AATGTGAATATGAATGTGTAGTCATAAAAGAGTTGTTTAGGCTGGCTCATATTAGAAAAAAATATTCGCTTTAGGCTAGG GCTGGGCTGAAACTGAATTCGTGCTACTAATTTACTAGCCCAACTGGCCCTCTATAGGCTATGGGCTAAACTGGCCAACG GGCCTTTTTTTATAAAATAACTTTAAACACGTTTCAAAATAATCATTTTCCTACTATATGAAAATAGAAAAGAGTAATAA ATATTTTATTATTGTTGTTTTTATTTCTTTTTATTCATAAATATAGATTGAATAAATAAGAAAAGAG

Download Genomic Sequence

CDS sequence (LotjaGi2g1v0264200.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCGGAGAGCCAAGATCAACTAGAGATCAAGTTTCGATTGAGTGACGGGTCAGATATTGGCCCCAAAAGTTTTGCTGC TGCTACTAGAATTACAGCACTGAAAGAAAGTATTCTTGCGCAATGGCCAAAAGACAAGGAGTATGGCCCAAAAACTGTAA AAGATGTGAAGTTAATTAATGCGGGAAAAATATTGGAGAACAACAGAACAGTGGGGGAATGCCAGAGTCCATTGTGTAAT CCCCCTGGTGGAGTAACAACTATGCTTGTGGTTGTGCAACCACCAACTGTGGAGAAAGAGAAGAATGTAGCAAGTGAAGC AAAGCAGAGCAAATGTGTCTGTGTCATATTATAG

Download CDS Sequence

Protein sequence (LotjaGi2g1v0264200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MAESQDQLEIKFRLSDGSDIGPKSFAAATRITALKESILAQWPKDKEYGPKTVKDVKLINAGKILENNRTVGECQSPLCN PPGGVTTMLVVVQPPTVEKEKNVASEAKQSKCVCVIL

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
Gene3D	G3DSA:3.10.20.90 View details on G3DSA:3.10.20.90 Search for proteins/transripts with this domain View external data on G3DSA:3.10.20.90	1	101	101	1.0E-31	–
PANTHER	PTHR13169:SF13 View details on PTHR13169:SF13 Search for proteins/transripts with this domain View external data on PTHR13169:SF13	1	117	117	4.4E-61	–
PIRSF	PIRSF032572 View details on PIRSF032572 Search for proteins/transripts with this domain View external data on PIRSF032572	1	117	117	1.3E-45	IPR017000 Show description in modal box View details on IPR017000 Search for proteins/transripts with this domain View on EBI InterPro Service
PANTHER	PTHR13169 View details on PTHR13169 Search for proteins/transripts with this domain View external data on PTHR13169	1	117	117	4.4E-61	IPR040015 Show description in modal box View details on IPR040015 Search for proteins/transripts with this domain View on EBI InterPro Service
SUPERFAMILY	SSF54236 View details on SSF54236 Search for proteins/transripts with this domain View external data on SSF54236	4	99	96	1.98E-23	IPR029071 Show description in modal box View details on IPR029071 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF13881 View details on PF13881 Search for proteins/transripts with this domain View external data on PF13881	6	115	110	5.8E-38	IPR039540 Show description in modal box View details on IPR039540 Search for proteins/transripts with this domain View on EBI InterPro Service
CDD	cd01814 View details on cd01814 Search for proteins/transripts with this domain View external data on cd01814	7	95	89	6.30709E-47	–

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

Unable to find any GO terms for the transcript with the identifier.

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Expression data

Expression pattern

Expression pattern of LotjaGi2g1v0264200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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