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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0269000 |
| Transcript ID | LotjaGi2g1v0269000.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | tRNA (Guanine(26)-N(2))-dimethyltransferase; TAIR: AT5G15810.1 tRNA (guanine(26)-N(2))-dimethyltransferase; Swiss-Prot: sp|Q9LFU5|TRM1_ARATH Probable tRNA (guanine(26)-N(2))-dimethyltransferase 1; TrEMBL-Plants: tr|V7BZQ1|V7BZQ1_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0269000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:73835054..73841049) extracted from Lotus japonicus Gifu genome v1.2.
GTGAAAAATGCATACGTGCGACATTAAAACCAATTCTCTACAAATTTATGGTGACTTCATGCATTTTCCTCAATTTAATA TTTCAGGTAATTAAGAAATAATAAAAAAATTCGATTGAACTCAGAATCGCAATTTAGGGTTTAAGAGGAAAAAAAAAACC AGGCCAAAGACAAGTTGAAAAACTAGTGGTAGGGTTTTCAGTTACCTTGTTTGAAAGAGCCATGTATAAAACCGGTGTGT ATGTTGGTTACAGGGCATAGTGCTTCGAAACTGCTACTGAAGCTTGTTGCAGCAAGGACAATCGGAACGAACCCTAATCC TCTCTTCAAATCGTGCTCTTTCTTCTGTACCAGAACGGAGGAGGAGAAGGAGAAGACCCTGAATTTGTTTTTGCATGATA TAGGCACAAAAATGTCTATGGATCTCAATGATTTTAAGATCATTAAGGAAGGTGAAGCTGAGATTCTTATGCATGCTGAG AATGAAGTATTCTATAACAAAGCTCAGGTACAAAAAAAATCAATTTTTTACTATGTTTTTTCCGTTTTGAAATCAGGGTT GCGAAGAAAAATCAATTTTTTTTCAATCTGAGTTTTGGTTCATGGTAGAAAAAGTTAGCTGGCCAAGAAAAATTAAATTT TGAATAGTGGGGTGGTCAGAACTTTTGTAAATTGTCTTTGATAGGGTTTATTGTTGATTGTTTATGCTTGTCTGTTGAAT TATGCAGGCCTTGTATTTATCAGGTTGATATCAGTATGTTTCCGGTTAATGTAGTTTCGGGGTTTATTTTCTTGGCTGTG TAAGATAGACTGATCCCATTTTCCTTTTATTAGGTTAATAACAGGGATATGTCAATTGCTGTTTTGAGAACTTTTATATC GAAACGGAAGCAAGAGCATGAAGCAAATTTGTCCAAGAGATCGAAAAAGACACAAAAACCATCTGAAAATGGTTCTTCTG AATTAGTTACGGAGGAAGTATTTCACGAAGCTGCACCAGAAGATCATAAGTCTAATGGGGAATGTGAAATCAAGGAAGAG ATATCTCCAGAAGAACCATGCAGTGAAACGGATGGATCAGTTAAGATAACTGAAGAATGTAGAAGTGGAGAAGAACAAAT TGATCTTTTGGAAGGAAAAGGACGGAAGGAGCTGAAGCCACCAATAGTTCTTGAGGTTTTCCATGCTTTTTAGCTTTCAT TAGCATAACTCTTTAATGTCATGAAGGCATCACTATCACCATTGTCCTTCCATATCGGATATAAATATTTTTCTTTGCAA TTCAAATCCAGTTCCGGTATCACATGTATGATTGCTCTTTTACTTTCCTGCATACAGGCCTTGTCTGCTTCTGGGTTAAG GGCTCTCAGATATGCTCGGGAAATAGAAGGGATTGGTCAGGTTGTTGCCCTGGACAATGATGCAGGTGCTTCAAGGATTT TTCAGTTTATATTGTCTTCAAATTTTGTTCTGTGGTTTTAAAACATAAAAAACTCTGCACCTTTGTGGTTTGTCTACTCT TAGGATACTTATAGTTGCTACCTTTTGTTTGAGATTAGTGCTTATTCTTTGTTTATAAGCATATGAGTCTGCATACATAG TACTGATTTTTGCTTCTGGCAGCTTCTGTCGAAGCTTGCAGAAGGAACATCAAATTCAATGGTTCAGTTGCAGTCTCAAA AGTGGAGTCTCATCTTGCTGATGCTCGTGTATACATGCTAACCCACCCTAATGAGTTTGATGTGGTAAGTAGATGCCACT GTTATGCACTTGTATTCACCTCTTAGTCTAAGCAACATACATTTTTCATTGTCTTCACATGTTTTGTTTTTCAGGTTGAT CTTGATCCTTATGGTTCTCCTTCTGTGTTTCTGGATTCGGCAGTTCAATCTGTTGCTGATGGAGGCATGCTTATGTGTAC TGCAACAGATATGGCTGTACTCTGTGGGGGAAATGGGGAGGTCTGCTATTCAAAGTAATGCTCTTATTCACTATGAACTT TCATTCCACAATTATTTATTCGGTGCACTGAACTTCTTACAACTGATATTCATACTAGATATGGATCATATGCCCTGAAA GGGCAATATTGCCATGAAATGGCCTTGAGGATCCTTCTTGCTTCCATTGAGGTATGTATATACTTTTGAAGCTCTTTTCC ATCGAATGAGATATCATTAAATTAGTTTCAATTGATAGAAATCAAGATTTAGTTGGATTGTCATATTAGAAATTGGGAGG CCTATACTCAACCACAAAAGCTAGCTCAAGAGTTGAGGTTTGCACTACCCTTATAAAGCTTATCTTGGCTCTATCTCTAG CCAATGTGGGACTTCTAACACACCCCCTCACGTCCAGGATTGAACAGACTGGAACGTGGGATCAACAACGGGTGGCCCAA ATATGGGTGATCTCCACAACAAATGGATCTAGGATAGGCTCTGATACCATAATAGGAAAACCAGAGAAAGAGAAAAAGAT TTGCATATGAAATATTCACTATGAATTGTTAACCGATACAATGAGGATTGAATCCTTATATAGGATTGAAGAAGCTTGCT CTACAAGCTAAACTAACAGCTAAGCTAACTCTAACTGAATGGTAACAACCTCTAACAGAATTGACAGCTGTTCCTCTAAC AGAATTGACAGCTGTTCAAAACAGAATTAACAACTGTGTCCAGCTGGCATTCCAGCTGGCACACACACACTAAGCATAAC CAATATTTTCATATCACCTATATACTCTAATAGTTTCCTTGTACATAGTTATATAAATATTTTGAAATTCCACATTGTTA TTGGGTTATGTGTTCTTTGGTATCTAGCAACTTTTATGCCGATATCATGATTTTTTTTAGAGAATGTCTGGAACAAATAG TAGTAGTTCCTTTTCCTACACAATGTGTAGTGGATGTTGCTATAATTGTTGCATTTTCATTTTGCATCTCATTGTCTGTT GTCGTCTTGTATCGTAGAAGTTTCTGAAAGGGAGAATTCCAAAAAAGTGAACATAGGTTCTAATATTTTTATGATATGTT AATTCCATCAATAAAACAGGTGACCGATATATACCTTGCAAGAATATTAATATTTATGGGAGGTTCCAAGAGATTTAGTG CTTAAGTGATCACTTAGAAATCAAGGAGTGTCATTGATTGGAAAATCATTAGTTTGGATTGGAATTGTATACATGCATAT GTATATCGAACTATGAGGCTGTTTGGATCTTGATTTTTCCAATCAACTGATGTAACTTCTCATGTAATAACTTGTCAGTT TGACAAATCACAAAATATGGAACATATATGTTGTTTTGTTCTATTCTATTCCTGTTGCTTGTGTTAGGTATGTACCACTA GCTATGTAATAGCTTGATTGAGAGTATTTGCGCAGACTAGTCATGTCGGTAATGGAAAACTTTGGAATTGTTTGATTGTC AGTCACTGCACCACTTTTCAGACAAGGTGATTTTTTGTGAAATAAACCTAGTAGAGGGGATTTAAGCGCACATCAGTTTT TAAGCAATAGCCAACAGTTTCTAGTGCAAACTGTATATAAAGACAAAATACCCTGTACTTCCTGGATAAATGTCAGGTTG CATTAGATACTCTGGCAGCACCTTTATTTGTTAATACCTAAGCTTTGTCTTCTCATGTTATTTGGATGCCAAGGTTGATG TTAAATAACAAAAAACATAATGACCCAAATATGTTGTGTTAAATTTTGGACCAATTGAATATCTATAAATTTTTCAATAA ATATAATGTTTGACTCTTCATATAATGCAGAGTCATGCTAATCGTTACAAGCGGCATATTGTTCCTGTGCTATCTGTTCG AATGGACTTCTATATTCGTGTTTTTGTTCGTATATACACGTAAGTCTTAGTTTCTCTGTCATGTATTTTAGAAAATATTG TGTGTTTATGTCTTTATGAAATATTGATTCCATAGCATTTCGTCATTTTATTTGCTTCCAACTGAAGGATGAATTCCTTG GTTGCAGGTCTGCTAATGCTATGAAAAGCACTCCCTTGAAGCTTTCATATGTTTATCAGTGCACTGGTTGTGATTCTTTC CACCTACAGCCCCTAGGAAGGAGCATTTCCAAGGTGTGTGTATATGTTGTTGTTTGTTTTATAAGCTCCATATCAACAAC ACAGTACATTTAAATTCATATTTGTTTGTATATATTAGAAAGAAGCCAATTAGAAGACCAAATAACCCATTCTGATGATC CACTATATTCTACATTGGTTTGGGGGTTTGGGTTTTATGCTCTTTGGCGTTGCATATACCAAAGGGCTATTATGTTGTGC TCCTTGAAGCCTGCATGGCCATTTATGTGAAGTGCTTTATTTTTATTGACTAGTCTTGAATGGGGAACTTATTTTCTTTT TTACTTTCTTCAGAATACTAGCGTCAGACATTTGCCTGCATATGGTCCTGTTGTTCCTCAAGAGTGCAATGATTGTGGGA AAAAGTTCAATATGGGTGGCCCTATATGGTCTGCTCCTATACACGACCAAGAGTGGGTTGCTTCTATTCTAGCAGATGTG AAACGAATGAAGGACAGCTACCCCGCATATGATCGCATATCAGCTGTGTTGACTACAATATCAGAGGTATGTTTTCATCA TTCATGTCTAGTTTTTAACACGACACACATCACATTTATGGTATGATTCAAATGTGTAGTGTTCTGGCATCCAATCTTCT AATATTCAATGGATTTATTCTTTGCAGGAATTGCCAGATGTTCCTCTGTTTTTAAGTCTGCACAGCCTCTGTTCAACCCT TAAATGCACTTCTCCATCAGCAATTATTTTTCGTTCGGCTGTGATCAATGCAGGATATCGTATATCTGGAACTCATGTTT GTCCACTGGGGCTTAAATCAGACGCACCCATGGATGTTATTTGGGATATAATGCGCTGCTGGGTAAGTGGTTCAATGCTG GTCCTCAGTTGATTAAGACTAGTTCATTTATATGTTTGTTTTGTTGGTTTCTGCGGAATTGATATTTTTTTTTTTGGTGT TTTTGTGCCTATTTTTTGGGGCGGGCGGGTGTTGTCAATTCAATAATGCTTGAGTAGTCTGGGGAATAAAACAATAAGTT ATTTGTATTTTTATTCTGTTCACATATTTCACAGGTAAAAAATCATCCTGTAAAAGCTCAGCCAGCAGATAAATCAGGAA GTGTCATACTTGCAAAGGAACCTGTTCTGCAGGTATATTTTGCCATTCAACTTTTATTCTCATGCAAAATTCAGGGTTAT TCCCCCTTCTCCTTAATCTATGCAAATTTTGGATTCTACTTTAAGAAGCACGTGCATGAAGTTTTCACAGATTTGTGGTG GGAGAGGTAGAGTAGTAATGGTGGCTAAAAGCTTTGTTGTTTGCGTTCTTTTTAGGCTAATTTTGCTAGAGCGGTAGCAT CTCTTAGCAAGGCACAAGCTAAGAAAGTTGCCCGGTTTTTGCCAAATCCTGAAAAACACTGGGGGCCAAAAGTAAGGGCT GGACGTCAGATTACTAGTAAGCATGTCTCTCTCTTGGGTGAAGCCGCAATTAATGGAGTTCTCAACCAGAAAGATAATGA AGAACCTGAAAGTAAGAGGCAGAAGAAGTGATGACAATATCATCTTATCTCATAATTGAGGTTCTTGAAATTATTTCTCA TCAATTTAGTGACCCTGAAATTCTATTTTTTCGTTACTAAAGGAAGTCCATTTGTTTCCATTAAATTTTGCAGCGAGCTA AGATCTAGATAATGTGCCTTGTTTTCTTGCTAACATTTATGCGAAATGCTGTGGCAAGAATAAGGCACTTTGTTTTTTCT TTGAAAAATGTATTTGTAGAATAATAAGTTTTTTCAAGTGATTTTTTATTTTGTATTTGATATTAAGTTCCAAGTTTTGA CTTACATCATGGGAACCATGTTTTTCAGCATAGTATGATTGTGGATATTAAAGGAAATTACTAAAATTTTGGCCGT
CDS sequence (LotjaGi2g1v0269000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTGGTTACAGGGCATAGTGCTTCGAAACTGCTACTGAAGCTTGTTGCAGCAAGGACAATCGGAACGAACCCTAATCC TCTCTTCAAATCGTGCTCTTTCTTCTGTACCAGAACGGAGGAGGAGAAGGAGAAGACCCTGAATTTGTTTTTGCATGATA TAGGCACAAAAATGTCTATGGATCTCAATGATTTTAAGATCATTAAGGAAGGTGAAGCTGAGATTCTTATGCATGCTGAG AATGAAGTATTCTATAACAAAGCTCAGGTTAATAACAGGGATATGTCAATTGCTGTTTTGAGAACTTTTATATCGAAACG GAAGCAAGAGCATGAAGCAAATTTGTCCAAGAGATCGAAAAAGACACAAAAACCATCTGAAAATGGTTCTTCTGAATTAG TTACGGAGGAAGTATTTCACGAAGCTGCACCAGAAGATCATAAGTCTAATGGGGAATGTGAAATCAAGGAAGAGATATCT CCAGAAGAACCATGCAGTGAAACGGATGGATCAGTTAAGATAACTGAAGAATGTAGAAGTGGAGAAGAACAAATTGATCT TTTGGAAGGAAAAGGACGGAAGGAGCTGAAGCCACCAATAGTTCTTGAGGCCTTGTCTGCTTCTGGGTTAAGGGCTCTCA GATATGCTCGGGAAATAGAAGGGATTGGTCAGGTTGTTGCCCTGGACAATGATGCAGCTTCTGTCGAAGCTTGCAGAAGG AACATCAAATTCAATGGTTCAGTTGCAGTCTCAAAAGTGGAGTCTCATCTTGCTGATGCTCGTGTATACATGCTAACCCA CCCTAATGAGTTTGATGTGGTTGATCTTGATCCTTATGGTTCTCCTTCTGTGTTTCTGGATTCGGCAGTTCAATCTGTTG CTGATGGAGGCATGCTTATGTGTACTGCAACAGATATGGCTGTACTCTGTGGGGGAAATGGGGAGGTCTGCTATTCAAAA TATGGATCATATGCCCTGAAAGGGCAATATTGCCATGAAATGGCCTTGAGGATCCTTCTTGCTTCCATTGAGAGTCATGC TAATCGTTACAAGCGGCATATTGTTCCTGTGCTATCTGTTCGAATGGACTTCTATATTCGTGTTTTTGTTCGTATATACA CGTCTGCTAATGCTATGAAAAGCACTCCCTTGAAGCTTTCATATGTTTATCAGTGCACTGGTTGTGATTCTTTCCACCTA CAGCCCCTAGGAAGGAGCATTTCCAAGAATACTAGCGTCAGACATTTGCCTGCATATGGTCCTGTTGTTCCTCAAGAGTG CAATGATTGTGGGAAAAAGTTCAATATGGGTGGCCCTATATGGTCTGCTCCTATACACGACCAAGAGTGGGTTGCTTCTA TTCTAGCAGATGTGAAACGAATGAAGGACAGCTACCCCGCATATGATCGCATATCAGCTGTGTTGACTACAATATCAGAG GAATTGCCAGATGTTCCTCTGTTTTTAAGTCTGCACAGCCTCTGTTCAACCCTTAAATGCACTTCTCCATCAGCAATTAT TTTTCGTTCGGCTGTGATCAATGCAGGATATCGTATATCTGGAACTCATGTTTGTCCACTGGGGCTTAAATCAGACGCAC CCATGGATGTTATTTGGGATATAATGCGCTGCTGGGTAAAAAATCATCCTGTAAAAGCTCAGCCAGCAGATAAATCAGGA AGTGTCATACTTGCAAAGGAACCTGTTCTGCAGGCTAATTTTGCTAGAGCGGTAGCATCTCTTAGCAAGGCACAAGCTAA GAAAGTTGCCCGGTTTTTGCCAAATCCTGAAAAACACTGGGGGCCAAAAGTAAGGGCTGGACGTCAGATTACTAGTAAGC ATGTCTCTCTCTTGGGTGAAGCCGCAATTAATGGAGTTCTCAACCAGAAAGATAATGAAGAACCTGAAAGTAAGAGGCAG AAGAAGTGA
Protein sequence (LotjaGi2g1v0269000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLVTGHSASKLLLKLVAARTIGTNPNPLFKSCSFFCTRTEEEKEKTLNLFLHDIGTKMSMDLNDFKIIKEGEAEILMHAE NEVFYNKAQVNNRDMSIAVLRTFISKRKQEHEANLSKRSKKTQKPSENGSSELVTEEVFHEAAPEDHKSNGECEIKEEIS PEEPCSETDGSVKITEECRSGEEQIDLLEGKGRKELKPPIVLEALSASGLRALRYAREIEGIGQVVALDNDAASVEACRR NIKFNGSVAVSKVESHLADARVYMLTHPNEFDVVDLDPYGSPSVFLDSAVQSVADGGMLMCTATDMAVLCGGNGEVCYSK YGSYALKGQYCHEMALRILLASIESHANRYKRHIVPVLSVRMDFYIRVFVRIYTSANAMKSTPLKLSYVYQCTGCDSFHL QPLGRSISKNTSVRHLPAYGPVVPQECNDCGKKFNMGGPIWSAPIHDQEWVASILADVKRMKDSYPAYDRISAVLTTISE ELPDVPLFLSLHSLCSTLKCTSPSAIIFRSAVINAGYRISGTHVCPLGLKSDAPMDVIWDIMRCWVKNHPVKAQPADKSG SVILAKEPVLQANFARAVASLSKAQAKKVARFLPNPEKHWGPKVRAGRQITSKHVSLLGEAAINGVLNQKDNEEPESKRQ KK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 18 | 18 | - | – | |
| Phobius | 1 | 1 | 1 | - | – | |
| Phobius | 2 | 13 | 12 | - | – | |
| Phobius | 14 | 18 | 5 | - | – | |
| Phobius | 19 | 642 | 624 | - | – | |
| PANTHER | 60 | 632 | 573 | 0.0 | – | |
| PANTHER | 60 | 632 | 573 | 0.0 | ||
| SUPERFAMILY | 66 | 544 | 479 | 7.21E-108 | ||
| ProSiteProfiles | 66 | 542 | 477 | 137.539 | ||
| TIGRFAM | 68 | 544 | 477 | 2.8E-94 | ||
| Pfam | 69 | 543 | 475 | 3.7E-117 | ||
| MobiDBLite | 110 | 151 | 42 | - | – | |
| MobiDBLite | 110 | 125 | 16 | - | – | |
| CDD | 201 | 302 | 102 | 1.20556E-4 | – | |
| Gene3D | 486 | 544 | 59 | 9.1E-17 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | RNA binding | Interacting selectively and non-covalently with an RNA molecule or a portion thereof. | ||
| Molecular function | TRNA (guanine-N2-)-methyltransferase activity | Catalysis of the reaction: S-adenosyl-L-methionine + tRNA containing guanine = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine. | ||
| Biological process | TRNA processing | The process in which a pre-tRNA molecule is converted to a mature tRNA, ready for addition of an aminoacyl group. |
Expression pattern of LotjaGi2g1v0269000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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