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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0272200 |
| Transcript ID | LotjaGi2g1v0272200.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Amino acid transporter, putative; TAIR: AT3G30390.1 Transmembrane amino acid transporter family protein; Swiss-Prot: sp|Q9DCP2|S38A3_MOUSE Sodium-coupled neutral amino acid transporter 3; TrEMBL-Plants: tr|K7MWE5|K7MWE5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0272200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:74319416..74324112) extracted from Lotus japonicus Gifu genome v1.2.
CAAAAATAATGTAGTTGCGTGTGGTTGTTCAAATTCAATTCAACACTCCAATCCAAACCTCATAATTTGCACACAGAATT GATTCTTCTCAAAGTCAATTCGTATTCTCACTGTTGCTCAATACATTACCACAATTTCAATCAATAATTCAATACTAATT CTGCTTCTCATTCTCTCAAATTAGCAAACTGTATGTATTTGTCAAATCAAAAATCAAAATCATCTTCTCTAGTCAATCTT CACCACCCATTTTCTCTTGCTTCTGATTCTTTCCTTCTTTTCTTCTTTGGTTGCAAATTTGGAACCTTTCTTGAACACAC CCAAAAGGGTCATTGGATTTGCCTAATTTGCTTGACACATTCGGGTTCTGCATTCTGATCCATGCGGTTTTTGGCTTTCA TTCAATCTCAATTGGGTATCAAGTTTTGAATTTTGATTTCATTTTCTTTGTTTGGTTGCTTCAAAGTTTGAATCTTTTCA TCATTTTGAGAAATGGGTGTGTTTTTTTTTTGAATTTTGACAGAGTTGTTGAGCTGATTAGGAATTTTCCCAGAAGAGAA AAACTTGGAAGCTGAAAATGACGACAGGGGGTCTTCCACCTAAGCCAGAGAAGACAAAATCAAGGAGGAACAAGGCTGTT GTTGATGAGAATGCACCTTTGATTCCCAAGACTCAGGAAAATGATGATGCTGGGTATGATGATTTTAATGGAGCTTCATT TTCTGGGGCTGTTTTCAACTTGTCGACCACAATCATTGGTGCTGGGATCATGGGTTTGCCTGCATGTGTGAAAAAGTTGG GGATGGTGCCTGGTCTTCTTGCTATAATCTTAACAGCATTCTTGACAGACAAGTCAATTGAGTTCATGATTAGGTTTTCC AGGGCAGGGAACATTTCTTCTTATGGAAATCTCATGCGAGACGCGTTTGGGAAATTCGGGAAAGCTCTGTCGGAGATAAG TGTTGTAATCAATAACATCGGCGTGCTGATTGTTTACATGATTATTATTGGTAAAGACTGAATACCATATTCTTAAGCCT AGTAGTTACAAGTTTATTTGGATGGACTTTCATTGTTATCACAGGTTTTGGTTTTAGTTGAACTTAAGGTTTTCTAATTC AGTTTTGTTTTGTACATATTGCAGGTGATGTGATTTCTGGAACATCTTCAGGTGGAACTCACCATTCTGGTGTCCTTGAA GGATGGTTTGGGGTCCATTGGTGGACTGGGCGTGCATTTGTTCTTGTTGTTGTAACATTAGCTGTGTTTGCACCTTTGGT CAGCTTTAAGCGAATTGGTAAGTGTTTGTTTCTTTCCCAATTATTAAAAGCATAATTATGTCACTTATTCAATTACAAAC TACAGGTCATAAATTAGTTAGGAAGATGATTGGCTTACATGCTTAGAGTAACATGCATAAGTTCTAATTTCTTAACCACT TTATGAGGTTCCTAAAAACACTGTTTGTCATTCTCAAAGTACAGAAAAGTATTTGTTGAAGTGCTGAAATCTATTTTAAA TTAGCATTGATTAAGCTATACTTTGATTCGATATCTAATAATGAGTGGAATGACATGGAATATAAATAAACTTACCATAT CATAATTTGGATATTTTATGATAGAAGGGATTAAAAGTTTCATTTTATTGTTTGAAAAGTAAAAAGAACGATAAGGAGAT CAATCAGTTGACTCCATCTCATACACCAAGTTGGTGAATGGAATAGATTTCATGTCATTGCACCCTATTTATATGATGGG ATCATAGGAGAGGTCTTTTCATGATATATTTAGGCTTATATCTTAATAAGCAACACTGCTTTTAACAAATCCATGAAGAT TTTTTACATGCCTGCTCTATGGTTTTTGCAGATTCATTGAGATTCACGTCTGCGTTATCAGTTGGACTAGCAATTGTTTT TCTTGTCATTGCTGTGGGAATCTCAATTATCAAGATTATAAGTGGAGGCCTTGAGATGCCCAAACTTTTTCCAATCATTA CTGATGCAGCGTCAGTTTTTGAACTATTCACCGTAGTTCCTGTGCTAGTGACTGCTTTTATCTGCCACTACAATGGTACA AAAGATTTTCAGACATTTGTTTCAAACTCTTTGGCCCTGTTTTAATGTGTTTAAGCAGAATAGACTTATGTAACTCTAAT TTGGTTACTAACTTGCATATAAAATGTTGAGGTCGTTCTCACAACTCTTTCCATAAGCATCATCTCATTCCATGACCAGC TAATTAGAAAAGAAAATATCAATCCATTAAAGTTGACATCTAGGTTATTTTGGTTTGGTTGGCGCAGCACCATGCCTCCA AACTTGGCACACTAAAATTTGTTCATCCTATTTATCATATTCTTCTTAGTTCAATCTATATTCTAAATTAGCAACATGAT AAATGAAAGTATGCATTTTTAATCCTATGCTTTGTTCATGGAGTGGTCATATAAATTTCAAACCGATTTTGCAAGTACTA TTAAACAATTGACTGTTACAAAAGTTTCTGAATTGGGAGCCTGACATGATTGCACTAAGCTATCTAAATCCACTTGTTTG CTTCATGGAAATATAGTCTGATAGTTGCATTATGTGCACTCTTCATTGCAGTTCACAGCATAGATAATGAACTTGAAAAC TCATCACAAATGCATGGGGTTGTACGTACTTCCCTTGCTCTATGCTCCTCGGTGTACTTACTGACAAGCTTCTTTGGGTT CCTCCTATTTGGTGACGGAACACTTGACGACGTGCTTGCCAATTTTGATACTGATCTTGGAATTCCTTTTGGTTCTGTGC TCAATGACGCTGTTCGTTTTAGCTATGCTGCACATCTTGTGCTTGTGTTTCCAGTAGTCTTCTATGCAGTGCGGGTCAAC ATAGATGGTCTCTTATTTTCTTCATCAAGGCCTTTGGCTCTAGATAACTTTAGATTTGCATCAATCACTAGTACCCTTGT CGCCATTATCTTCCTGGGAGCAAATTTCATACCCAGCATTTGGGATATTTTCCAGTTCACTGGAGCAACAGCTGCTGTTT GTGTAGGATTCATATTTCCAGCTGCCATCACTCTTAGGTGAGTTTGGTAACTGAACTCTTTTAATTCAGCAATGGATTTG GTTTCTAATATGGTTTTTCTGTTGTATTAAGATATTTATTTAGTAGGAGAAGGGGGGGGGGGGGGTAAATAGCAATTTAT ATTTTCTTGATTTATGCATGCGTCAGAGCTAACAGGCGTTGTCACTCACCTTGAGGCAAAAAGTGAACGGAACTTTTCTT ATAGATTAGGATGAATGTGCTTTCACGTTAACTCAACGGGGTATACAAACACACACTTTGATTGTAGGATTTTGCTCTTT ACTCAGAGAGGAGATAACTAGCCAAGAAAGAATGCATTAACCTACATTATTTAGTAAATACTTCTTTTATTTTGAACTAT CAGAATCCCAGACATAAAAAACTGCCGAAAATGCTGGTAATTTCATTGTGCCTTTGTCTTCTACAAGCATATACCACAAT AGGCCATGTAGTCCGTACAAAGGAATCATGTGGAAATGTTAAAAGCTTTCTACATGGTAAAATAAGGATTTAAGAATTTA GATATAGTTATAATTCCCTTATGTTTTACGGTTTATTCTTGTGCTGATATTAATTAACTCAACAATCATTATTAAGCATT TTCTTTTACGACAGGGATCGACACAACATTGCAACTAGAACAGACAAGATTCTATCTGTCTTTATGATAATCCTGGCAGT ATTGTCAAACGCTGTGGCTATATACAGTGATGCCTATGCCATGACCAAGAAGAAAAAAGCTTAGTGTAAAGATTTGTTGA AACTTTCTTTTATAGCCTACCCACAAATTAAAGGGACAGAATTTGCAGGGTTATTGACCACGAATAAAATCAGGGTCTAT TGAGCGGCTCTGATGGGTTGATTATAATATAAACAAGGGGGTGCAATGTGTACAAATATTCTTCTGAAGTCTGTGAAGGC CTGCTACATCTTCAACCTTTGTAAATATGCTCTTTGCTATTGTTTGTAATTGTAGAGGTTCTTGGTTGTGCCTCTATTTC CTATGCTCCATCTCCCTCATAAGTCATATATATAAGAGAAGTACATGTTGTTAGTGGTTAAGGGACTCAAGGATCGCCAT ATGGATTGTGATTGTGAGAGAATGGTTTAGTTCAAGCAGGGAAGGCAAAACAACAACTTGAAGGATCTGCTTTTGTTCCT GTTTTTATTTTAGATTGAAAACTTGTTATTTGTTGATAGTTTGTGCTCTAAATTTCTCCAGAAATAGAACTTTCTGGAAA CTTAATTGCATTGTTCAAATCTTATGTAATTAAATATTTTTTTCAGATAAATGTTTGATAGAAACATATTACAGCAAGTT TGTTTTGTGACTTTTCCCCTTTGAGTTAAAAATAAGTGTGTTAACATTCACAGTAACATGTTTCATCCTGTTTGTGTATT TTTTTCGTTAAGTAAAAGTATATTTTCAAACTTTAAAAAATGTGTTTAGAAAAATATGGTTATAGTCTTATAGATTCTTT TCCTTTGAGACTGTGGTCCAATCTTCTAAATGGGGGCAGCTACCTTTTGATAAAGATGTCATATTGTCATATTTAACAAA ATTTAAGTGTTCTGAAGTTATAAACAAGATTGTGAATGTGAATGTCCTAAGAAGTTT
CDS sequence (LotjaGi2g1v0272200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACGACAGGGGGTCTTCCACCTAAGCCAGAGAAGACAAAATCAAGGAGGAACAAGGCTGTTGTTGATGAGAATGCACC TTTGATTCCCAAGACTCAGGAAAATGATGATGCTGGGTATGATGATTTTAATGGAGCTTCATTTTCTGGGGCTGTTTTCA ACTTGTCGACCACAATCATTGGTGCTGGGATCATGGGTTTGCCTGCATGTGTGAAAAAGTTGGGGATGGTGCCTGGTCTT CTTGCTATAATCTTAACAGCATTCTTGACAGACAAGTCAATTGAGTTCATGATTAGGTTTTCCAGGGCAGGGAACATTTC TTCTTATGGAAATCTCATGCGAGACGCGTTTGGGAAATTCGGGAAAGCTCTGTCGGAGATAAGTGTTGTAATCAATAACA TCGGCGTGCTGATTGTTTACATGATTATTATTGGTGATGTGATTTCTGGAACATCTTCAGGTGGAACTCACCATTCTGGT GTCCTTGAAGGATGGTTTGGGGTCCATTGGTGGACTGGGCGTGCATTTGTTCTTGTTGTTGTAACATTAGCTGTGTTTGC ACCTTTGGTCAGCTTTAAGCGAATTGATTCATTGAGATTCACGTCTGCGTTATCAGTTGGACTAGCAATTGTTTTTCTTG TCATTGCTGTGGGAATCTCAATTATCAAGATTATAAGTGGAGGCCTTGAGATGCCCAAACTTTTTCCAATCATTACTGAT GCAGCGTCAGTTTTTGAACTATTCACCGTAGTTCCTGTGCTAGTGACTGCTTTTATCTGCCACTACAATGTTCACAGCAT AGATAATGAACTTGAAAACTCATCACAAATGCATGGGGTTGTACGTACTTCCCTTGCTCTATGCTCCTCGGTGTACTTAC TGACAAGCTTCTTTGGGTTCCTCCTATTTGGTGACGGAACACTTGACGACGTGCTTGCCAATTTTGATACTGATCTTGGA ATTCCTTTTGGTTCTGTGCTCAATGACGCTGTTCGTTTTAGCTATGCTGCACATCTTGTGCTTGTGTTTCCAGTAGTCTT CTATGCAGTGCGGGTCAACATAGATGGTCTCTTATTTTCTTCATCAAGGCCTTTGGCTCTAGATAACTTTAGATTTGCAT CAATCACTAGTACCCTTGTCGCCATTATCTTCCTGGGAGCAAATTTCATACCCAGCATTTGGGATATTTTCCAGTTCACT GGAGCAACAGCTGCTGTTTGTGTAGGATTCATATTTCCAGCTGCCATCACTCTTAGGGATCGACACAACATTGCAACTAG AACAGACAAGATTCTATCTGTCTTTATGATAATCCTGGCAGTATTGTCAAACGCTGTGGCTATATACAGTGATGCCTATG CCATGACCAAGAAGAAAAAAGCTTAG
Protein sequence (LotjaGi2g1v0272200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTTGGLPPKPEKTKSRRNKAVVDENAPLIPKTQENDDAGYDDFNGASFSGAVFNLSTTIIGAGIMGLPACVKKLGMVPGL LAIILTAFLTDKSIEFMIRFSRAGNISSYGNLMRDAFGKFGKALSEISVVINNIGVLIVYMIIIGDVISGTSSGGTHHSG VLEGWFGVHWWTGRAFVLVVVTLAVFAPLVSFKRIDSLRFTSALSVGLAIVFLVIAVGISIIKIISGGLEMPKLFPIITD AASVFELFTVVPVLVTAFICHYNVHSIDNELENSSQMHGVVRTSLALCSSVYLLTSFFGFLLFGDGTLDDVLANFDTDLG IPFGSVLNDAVRFSYAAHLVLVFPVVFYAVRVNIDGLLFSSSRPLALDNFRFASITSTLVAIIFLGANFIPSIWDIFQFT GATAAVCVGFIFPAAITLRDRHNIATRTDKILSVFMIILAVLSNAVAIYSDAYAMTKKKKA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 73 | 73 | - | – | |
| MobiDBLite | 1 | 37 | 37 | - | – | |
| PANTHER | 8 | 460 | 453 | 2.8E-224 | – | |
| PANTHER | 8 | 460 | 453 | 2.8E-224 | – | |
| TMHMM | 45 | 67 | 23 | - | – | |
| Pfam | 46 | 450 | 405 | 2.9E-54 | ||
| Phobius | 74 | 90 | 17 | - | – | |
| Phobius | 91 | 128 | 38 | - | – | |
| TMHMM | 128 | 150 | 23 | - | – | |
| Phobius | 129 | 148 | 20 | - | – | |
| Phobius | 149 | 167 | 19 | - | – | |
| Phobius | 168 | 190 | 23 | - | – | |
| TMHMM | 170 | 192 | 23 | - | – | |
| Phobius | 191 | 201 | 11 | - | – | |
| Phobius | 202 | 225 | 24 | - | – | |
| TMHMM | 205 | 227 | 23 | - | – | |
| Phobius | 226 | 244 | 19 | - | – | |
| TMHMM | 242 | 264 | 23 | - | – | |
| Phobius | 245 | 264 | 20 | - | – | |
| Phobius | 265 | 284 | 20 | - | – | |
| Phobius | 285 | 304 | 20 | - | – | |
| TMHMM | 285 | 304 | 20 | - | – | |
| Phobius | 305 | 332 | 28 | - | – | |
| Phobius | 333 | 350 | 18 | - | – | |
| TMHMM | 333 | 350 | 18 | - | – | |
| Phobius | 351 | 369 | 19 | - | – | |
| TMHMM | 370 | 392 | 23 | - | – | |
| Phobius | 370 | 390 | 21 | - | – | |
| Phobius | 391 | 395 | 5 | - | – | |
| Phobius | 396 | 418 | 23 | - | – | |
| TMHMM | 396 | 418 | 23 | - | – | |
| Phobius | 419 | 429 | 11 | - | – | |
| Phobius | 430 | 449 | 20 | - | – | |
| TMHMM | 431 | 453 | 23 | - | – | |
| Phobius | 450 | 461 | 12 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0272200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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