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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0274000 |
| Transcript ID | LotjaGi2g1v0274000.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Reticulon-like protein; TAIR: AT3G18260.1 Reticulon family protein; Swiss-Prot: sp|Q9LJQ5|RTNLI_ARATH Reticulon-like protein B9; TrEMBL-Plants: tr|A0A1J7GNC6|A0A1J7GNC6_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0274000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:74528526..74533154) extracted from Lotus japonicus Gifu genome v1.2.
TATGGTTATTAATTATGATTATTTTTTTCCTTCATAAATATGTGGTTATGGGCTTATAGTATAGCCCGTTTGTTTACCGA GCAAGACCCCTCCTTCTCTCTCTCGCTCTGTTTCACATCTCACAGACCGGCGGCAACACACACGTTCACGCACAAAAACA ACACAAGCGGAGGTAAACTCTCCTTCTTTTCATCTTGTTCTCAACTATTGGTTTGTTGTTTTGAATTTGATTCTGTCTGT CTGTGTGTGTCTTGATTGTTGACCATAAGCTGTTTGATTAAATGTCTCAGCCAACAACAACTCTTCCAGTTTGGATTTGC TTGCTTAACCGTTTGCTATGTTATTGTTAATTGACTGTTCTCTTGTATATCCATAAACAAAGATGGAAGCTGAGTTGTAT TTGTTATGGGTTTTAGGGTGGGGAAAACTTACCTACAGTACCATAGGTAGGTTCGTACTGTGCTTCATTAAAAATCTTTA GTGAGTTTAGCTTCTTCCTTTGTTACTCATTTGATTTGTGTAGCTTATTCTCTTGTTCAATCAGGTTTTTTGGCATATTG TTTAAATTAATCCAATGTTTTAACTATATCTCTGTTCGGTGAGAATTAAGTTGATTTTCGTAGCGTAACTGATTTATATT GTCATTCACATATGTATGATTATATCCAATTTTTGGAATCTGATTGTGCAATTCACTTTGATTCAGGAATGCCAGAGAAG AAGCCGGTGATTGGGTTGACATGGCAACCACAGTTGCCGATTTCATCTTCATTAAAAGCCACAGATGGATCCCAAATCAA AACTCGAACCGAGGCATCAAGCAGCACTGTTTGGAAACCCAATTCAGAGCTGGTTGATGGCCTTTTTGTTCCTCCAAATG ATCCCAGAAAATTGAACAAGTTACTGAGAAAGCAAGTCAAAGATACTGCTGGGAAAAATTGGTATGCATTAGATTTTTCT CTCAATTCTCATTTTCTGAACACAAGCAGGGTTGGAATTTTTATTTCTTTGGTTGTTTATCTATTAATTTTGCACAGGTT AGCTGGGTGTAGTGGTAGTAACATTTTCTTTAAAAAAATATGTGGGTTGTGAAATCACCAAAGTATTTAAAAGGAGGATA AGAGGAGTAATGAACCAGGTCAGATTATGAGGTGCGATGCACCTTATCAGAATTAGAAGAAAGAAGGGCCAAACTAACTG TCTAGTGGGGAGTGTGTGTGGATCTGTTTAATGTCAGAGAGTATAAGCAAGGAAGTGGTAGGGAGGCTTTGGTATGCTGG GAAATTGGTTGGCAATTGGGAGAGACTGAGCCTCTCAAATTGCTTAGGATAGCTGTTGTATACGACTCACTATCCAAGAT CGATATCATTTGATCCAGGTCAAATGCACCTATCTTCATTTCATTTACAGAAGCAATATCTTTCTGTCAATTGTATTCAG TATTTCAGTTATTTTTTCCTATGGTTTTTCTTTTGCTCTTGGTTCGAAACTATGAAAGGGACTAAATATTTATCTAATTA TTTTGAAATCTTTGTCAGGTTCAACATGCCGGCTCAAACCATCACCCCTGAGTTGCAGAAAGATCTCAAGTTATTGAAGG TGCTTTTTAGTATTAAAATCTCTACCTTTTTATACACTTTTTCTTTCTGAATTGTATACATTGGCAAGTTAAACTTTCAT GCAATGGATATGTACATTTGAGGGCTCATACATACACAAACTTGAATCTATCCCGTCAATTTGTGTCATGCTATCTAATC TTGTTTTGGTACACCGCTCTTATCCTGAAACAGTTGAGGGGTGCCATTGATCCCAAGCGTCACTACAAGAAGGGTGATTC AAAATCAAAGACACTTCCCAAGTATTTCCAGGCAAGTTCATTATTGTATACTATGTAGATCATTGGCAAGCATATGCTTC AATGTTACTTGCTCCATCCAATAGGGGTAGCTTTAATTTTTGGATCATTGGAATATCATCAGATGGGAACAGTTGTAGAT TCTCCACTGGACTTCTTCTCTGGAAGACTAACAAAGGCGGAGAGGAAAGCATCGTTTGCAGAGGAGCTGCTTTCTGATCC AAACCTTGAAGCCTATAGGTAAGATAGGCAGTGAAGTATATAATTGTCTGGTTGAATAGACAATGCCTCTCTAAATGAAA ATATAAACTTGTTCCTGCACTTTCCTATGGTCTTCAGGCTACTTACTCGTTGTTTATCAACTTTTTTCTAGGAAGCGGAA GGTTCGAGAAATCGAAGAACAAAACAAACCAGCTGGGAATGAAAATTGGAAGATTAAAGGTGGGAGTTCCCGGAAGCGGG CAAAAGAAAAGAGGAATCGCTGAATTTCTACCCTTTTTAAGCCGTATATCTCTCCTAAATGCTTTGATCAGTTAGAATTA TTAACGTTGTTTGAAATTATCCTATCGATGCTGGCATTTTCCTTGTAACATTTTGGTGTGGCTGTTGTCTTCAGTCTCAT TCTGCTGCATGGCAATTCTATTTCTTCTTCACCCCTTTGTATATGAAGGGTTGATAATCTTAACTATTAAAGGACACTAT AATGAAGTGAAAAACAATTAACATTTTATCCAATAGGAGTAGATAAATAACAAGAACAAGGTTTGAATATTGCGTGGGCT CGTGGTAGAAAAACTTGAAGGGTAGGCCAAAGCCATACCTTTCTTTTCCATACAATGAGTTAATTTGTGTCTTGGTTACA AAGTTTAGAACCACAATATCCTTGGTTCATTTATAGGCTTCACAATCAATGCTAGCAAATTAGTTCAGGAAAATCATCTA ATATTACGTAGTTTCAGACTTTACTTGCAGTCATAGTCTTCAAATTGATAGCCATGCCAATTTTATTTGACCGCCACAGA CTGCATGCTATTTTTGGCGGTGGAAAGGGTATGAATTTCCAGGCTCAAATCTTACATTGCGCATCTCTCTTTTTCTTCCT ACAACGATTCTTGGTATTTAATAAAGTAATAAACAATAAAAATTCGCAAGATTTTTTTTGTGTATCTAATTCTAGGTGGC ATATTAAAGATGATTTTTTTTCTTTATTTCTTATGCCCCAAAAAATTTATTTAAAATTTCCACAAAACTTAAATATGGAC TCCTCATTTATTTAATAAATGGAGAAAAGTTGCACAAACACTAATTTGGGGCCATATAGTGTTAGAATTATGAGTTTAGT CTCTCTAAAATAAACTTTAAATGAAAAAGTAAAAAACTTAAATCACTGATTAAAAAGTCATAGGTCAATAATACAAATAC ATATACATAACAAATAAATTTGTGAAAATGTATCCCCTTTTTGAAATCTTTTACTTATAAATTTCCCTAATCTAAAGAAC TCGCCTTCAAAAAGTATCATAATACAACCTTCTAAGCGTTTATTTTGCATTTGATGCATTCCTATCCACAACACCCCATA ATCATGAAGATCAAATTAAAAGAAAAATAACTTTTTCTTTCTAAAAGTTGTTCTTTTTATTATACATGGTTTGATCTTTT TGTAGTTGCTGAAATAATGCTATGGGAGGACAAAAAGTTATCAGCTGCGGTCCTAGCTGGGTTCTCCATCATTTGGTTTC TCTTTGAAGTGGTGGAATACCATTTTATTACTCTACTCTGTCACATCCTTATAGCCATTATGCTCATTCTCTTTGTTTGG TATCAAGCAGCAGGACTCATCATATGGTAATATAATTTTAAGCTTAAAGTACTAATTAACTAATGGCTAAACCCATTTTA TCATTTAATAATCAATCTAAATATCTCAAATATTTGGAGCACTGAAGGAGTAAATTGGGAGTTTTTGATTAATTAGTTAA TGCAGTCATTGATATTTGTGGAACACATTAATATGTGGCATTGCATTCACAGGAACACTCCCAGTATCCATGATCTTGAA ATCCCAGAATCTACCTTAAGATTCTTCTGTGAAAAACTCAGCTGGTTGTTGAAGAAATTTTATGATATTTCAACCGGGAA AGATATGACACTATTCGTTGTGGTACTGATAGAAACCAATTTCAATTACTCTCATATGATCTCCTCTATATCATATCCAT TCTTAATTAATTTGTTAATTGACATCAAGTGGTTCAATTTCAGACAATCACCAGTCTCTGGATCATGTCAGCAATTGGGG CTTATGTCAGCACTTTGAATCTTTTATATTTCAGTAAGATCACAGACACATTCAATTTATCATGTGACATGCTTATCATT TTAGCCCAATTAATTGTTGATCCTGCTTTATATTTTTTTCTAGTGTTTCTCTGCATGGTGACCCTGCCTATTATGTACGA GCGTTATGAATCTGAGGTGGATTATATAGCAAGCAAAGGAAACCAAGACGTGAAGAGATTGTTCAAGACATTGGATTCTA AATTTCTCAATAAGATTCCTAAGGGACCAGTTAAAGAAAAGAGATTCAGATGAAGTTCAGCAAAAATTGTATATTTCATG CTAAGTATGTAAATGTAAATAATTCTTACACAATTCTAAATTGCATGTCATCTAGAGCTTGCCATAACATGTTTCAATAA AATGGGACCATTGGAGTAGCTGAAGAAGTGAAGATTCATATTGTTTAAAATATTTTAATTATATTTCAT
CDS sequence (LotjaGi2g1v0274000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCCAATTTTATTTGACCGCCACAGACTGCATGCTATTTTTGGCGGTGGAAAGGTTGCTGAAATAATGCTATGGGAGGA CAAAAAGTTATCAGCTGCGGTCCTAGCTGGGTTCTCCATCATTTGGTTTCTCTTTGAAGTGGTGGAATACCATTTTATTA CTCTACTCTGTCACATCCTTATAGCCATTATGCTCATTCTCTTTGTTTGGTATCAAGCAGCAGGACTCATCATATGGAAC ACTCCCAGTATCCATGATCTTGAAATCCCAGAATCTACCTTAAGATTCTTCTGTGAAAAACTCAGCTGGTTGTTGAAGAA ATTTTATGATATTTCAACCGGGAAAGATATGACACTATTCGTTGTGACAATCACCAGTCTCTGGATCATGTCAGCAATTG GGGCTTATGTCAGCACTTTGAATCTTTTATATTTCATGTTTCTCTGCATGGTGACCCTGCCTATTATGTACGAGCGTTAT GAATCTGAGGTGGATTATATAGCAAGCAAAGGAAACCAAGACGTGAAGAGATTGTTCAAGACATTGGATTCTAAATTTCT CAATAAGATTCCTAAGGGACCAGTTAAAGAAAAGAGATTCAGATGA
Protein sequence (LotjaGi2g1v0274000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MPILFDRHRLHAIFGGGKVAEIMLWEDKKLSAAVLAGFSIIWFLFEVVEYHFITLLCHILIAIMLILFVWYQAAGLIIWN TPSIHDLEIPESTLRFFCEKLSWLLKKFYDISTGKDMTLFVVTITSLWIMSAIGAYVSTLNLLYFMFLCMVTLPIMYERY ESEVDYIASKGNQDVKRLFKTLDSKFLNKIPKGPVKEKRFR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 29 | 29 | - | – | |
| PANTHER | 7 | 200 | 194 | 1.5E-88 | – | |
| PANTHER | 7 | 200 | 194 | 1.5E-88 | – | |
| Pfam | 19 | 170 | 152 | 2.4E-39 | ||
| ProSiteProfiles | 19 | 201 | 183 | 29.08 | ||
| Phobius | 30 | 45 | 16 | - | – | |
| TMHMM | 30 | 48 | 19 | - | – | |
| Phobius | 46 | 50 | 5 | - | – | |
| Phobius | 51 | 71 | 21 | - | – | |
| TMHMM | 55 | 77 | 23 | - | – | |
| Phobius | 72 | 116 | 45 | - | – | |
| Phobius | 117 | 136 | 20 | - | – | |
| TMHMM | 127 | 149 | 23 | - | – | |
| Phobius | 137 | 141 | 5 | - | – | |
| Phobius | 142 | 160 | 19 | - | – | |
| Phobius | 161 | 201 | 41 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0274000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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