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LotjaGi2g1v0277500.1

Overview

Field Value
Gene ID LotjaGi2g1v0277500
Transcript ID LotjaGi2g1v0277500.1
Lotus japonicus genome version Gifu v1.2
Description Ethylene-responsive transcription factor; TAIR: AT1G68550.1 Integrase-type DNA-binding superfamily protein; Swiss-Prot: sp|Q9CA27|EF118_ARATH Ethylene-responsive transcription factor ERF118; TrEMBL-Plants: tr|A0A0B2QYX4|A0A0B2QYX4_GLYSO Ethylene-responsive transcription factor ERF118; Found in the gene: LotjaGi2g1v0277500
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr2:74915757..74918686) extracted from Lotus japonicus Gifu genome v1.2.

GTTCCGTATAATGGGTATGAGACTATGAGTGTATGACAAATTCTCATAAAGTAACGATTGAAACGGTAATTGCTATATGG TAGTGTCTTCAGTGTGAAAGCACTGACTCAGAAACAGAACAGGGGAGAGAGAAAAGGTTTGAGTGTTTCCGTCACAGTGA CTGCAAGACAAATCTCAGAGGTAAATTTACTGCTATCAATGAACTTTCATGGTTAGATTCTCGACACATGTAATGTTTTT AAATATAAGTTTGGTTTCTTATTGTTTTCTATTGAGATTTGTGTCCTTCGTGTGCAAAATTCACTATTTTTAATTTTGTA GTGTTAGATAATTTGTAACAGGTAAAGGGTAGCCATAAATTTGTAATCTTTTCATCTCTTGCAGCATCTCTTCCTTTTGG TGCTTTTTGACTGTGATTTTTGTGACGAACTCCAAAACAAACAGAGGAGGAAGAGAAATTTATGTCGTTTAATCTGGAAG TGGTTGGAGCAGCACTGTTGCAGCTCTATTTTGTTTATGGTTTTGCTTGTTCTTGTGTGCTAATCTGCTCAGGGTTCATC AGAGCATTTTCGATGCGATTGAGGATAACAAGGTTTGTTAATTTTCTTACTTTTCAAAATATTTTGAATTTTTCTTTTGT TGGATTTGTGATTCTGATTTTTTTTCTTCTATTTTTACCAGGAATGGCTATAATATTATGGTTTGTTACGGAGACTTTCA TATAAAAACATTTTCTAATCCCTTACTCTTTCTGAGAGTGTATTATCTCACTTGAAATTTTGTTTCTGTTTGATTTTTAA AAAAATTTGAATTTTTGGGTATTTTGAGGGGTTTTGGAATTTGGGGTGATTTGAGTTTTGAGAATTAATTTTCACTATGG TTGAGCCTCCTATACCACCAGCTAATCAGATGAAGAAGTTGAAGAACAAGCACACTCCATCACTCACAAGAAAGTTGTGC ATAATCTATGATGATCCTTATGCTACTGATTCTTCATCTGATGAAGAAGAGCATTTTGAGAAGAAGCCTAGAAAAATGAA GAGAATGGTGCGTGAGCTTGCTCTCCCCATTGTTTCAGCTAACAACACTGTCTCTCTTGATGAAACCAGCAATGAAAGTT CAAACAGCAAAGGACTGAACAAGAAGAGGGTTTTAGCCAAAACCCCTACATTGAGGAGGCAACCTTCTTGCAAATACAAA GGTGTTAGGATGAGGAAATGGGGGAAATGGGCTGCGGAGATTCGTGATCCGTTTAAGGGTGTGCGCCTATGGTTGGGAAC TTACAACACTGCTGAAGAAGCTTCCCAAGCCTATGAGAAGAAAAAGCTTGAATTTGAAGTTATGGCCAAGGCTCTATCTG ATGAGAACAACAACAAGAACAATGTTGTTGTTTCTGTTGAAAAGAATAGCTTCAACTACTGTGTTTCTTCTGCTGCAGCT TCTATATCAGACTCCAAATCTGCTACTTTGGATGACTCAGAGAGTGACTTGTCACATGCATCACCATCTTCTCAGGCTGA ATTGGATAACACAGCTTCCAATTTGATTGACATTGGAATGGTTTCAAGCAAGGAAGCTGTTGAGACTAGTACTTTGAAGG CTGAACTTGAAATGCCAGATTTGAGTCTTTTGAACATGCCAGCACCACCCCTTTGTGGTGCTGCCACTCCATCTCAGGTT GAACTAGATTGGTTGACAATTGATGGTTTCGAGAGCTATGATATTGATGATCTTGTTGGTGGCCTTAAAGACATCCCAAT CTGTGGTTTTGATGGTTCAGGTGAACTTCCTGATTTTAATTTTGATGACTTTGGTGCTGATGATGTTGCTGGTTTGATTG AAGAATCCCTCAATATACCGGTCCAATAAATTTTGCAACTATGTAGTAATGAGCTATCCTAGATTACTAGTACTATATTA GTGTGTGTTTGGAAAACTTATGCAGATCCATGTTTGGCCCTGATCCACGTTTGCAGAAGCAAGAAATAGTTGCTTTTATA TTTCTGGATCCACGTTTGGCCTCTCCAGATTTGAAACCAAACACACACTTACAAGTTTTGTGTGATTGCTTAAGAGTTAA GAGTGCTATAGTTTCTTGGATCTCGAGGATGAATCTAATTCTTGGAAGAGTTGTTTTGTAAGTTGAGTTTTAATTTATTT TGTTTCTTGAGGCATATGTAAGAATACCTTGGGTTTTGTTGTGCTATTGGAGCCGTCCAAGGATCTCTCTAATTATATTA TTATCCATGAAATTTCTTTAGTTGAGTGTAGAATATATAATTTGAATCTACTATTATCTACCCACCATATGCTTTAATTT TTATTCTGTGTGAATTTTGTTTCTTTTTATGTGTTAATAGTCACAAACCATTGAATCCTTTAGCTTCTTTTGAAAAAGAG AGTTTTGTCAAAATTCCAGTCTAAAAAGCAGGCTGAAGTATTTGGTAGTTTCCCTTTTGATGGAGAGTGAGGCATGTCCT GTGGTTTTGGCAGAGGAGATAAGATTTCAATTTGGAGAATAGTAATAGAAACCTGTATAGTGGGGCCAAAACACTGCACG AGGAGTAGTTCAGTTGTCAACACAAATTGAGTGTGCAGTGGACCAATAGCTATTGAGTTTGATTCTCGCATAATGTTGTA GAAGAGATGGAGAATTTTAACTATAACTAAATCTCATATTCGAAATTGTCGGCATCTCGTATTTAGAATAGTCGACATCT GAAAGGTAACTAAGTCTATTTGGTGGTTTAAACCATTAAGTGGGGGGCCAAAGCAAAGGCTGTGTGAGGTGACTTTTTTT CCAATGGAAGGATATCGTCAACCACCGGCAGGAAAGGAAAGATCTTGTACCCTTATGAGGGATAGCCTTCTTTTGCTGCT GCGCTAGCTGTATACCATTAGCCTATAGTACTGTGTACTGCACAATAAGC
Download Genomic Sequence

CDS sequence (LotjaGi2g1v0277500.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGTTGAGCCTCCTATACCACCAGCTAATCAGATGAAGAAGTTGAAGAACAAGCACACTCCATCACTCACAAGAAAGTT GTGCATAATCTATGATGATCCTTATGCTACTGATTCTTCATCTGATGAAGAAGAGCATTTTGAGAAGAAGCCTAGAAAAA TGAAGAGAATGGTGCGTGAGCTTGCTCTCCCCATTGTTTCAGCTAACAACACTGTCTCTCTTGATGAAACCAGCAATGAA AGTTCAAACAGCAAAGGACTGAACAAGAAGAGGGTTTTAGCCAAAACCCCTACATTGAGGAGGCAACCTTCTTGCAAATA CAAAGGTGTTAGGATGAGGAAATGGGGGAAATGGGCTGCGGAGATTCGTGATCCGTTTAAGGGTGTGCGCCTATGGTTGG GAACTTACAACACTGCTGAAGAAGCTTCCCAAGCCTATGAGAAGAAAAAGCTTGAATTTGAAGTTATGGCCAAGGCTCTA TCTGATGAGAACAACAACAAGAACAATGTTGTTGTTTCTGTTGAAAAGAATAGCTTCAACTACTGTGTTTCTTCTGCTGC AGCTTCTATATCAGACTCCAAATCTGCTACTTTGGATGACTCAGAGAGTGACTTGTCACATGCATCACCATCTTCTCAGG CTGAATTGGATAACACAGCTTCCAATTTGATTGACATTGGAATGGTTTCAAGCAAGGAAGCTGTTGAGACTAGTACTTTG AAGGCTGAACTTGAAATGCCAGATTTGAGTCTTTTGAACATGCCAGCACCACCCCTTTGTGGTGCTGCCACTCCATCTCA GGTTGAACTAGATTGGTTGACAATTGATGGTTTCGAGAGCTATGATATTGATGATCTTGTTGGTGGCCTTAAAGACATCC CAATCTGTGGTTTTGATGGTTCAGGTGAACTTCCTGATTTTAATTTTGATGACTTTGGTGCTGATGATGTTGCTGGTTTG ATTGAAGAATCCCTCAATATACCGGTCCAATAA
Download CDS Sequence

Protein sequence (LotjaGi2g1v0277500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MVEPPIPPANQMKKLKNKHTPSLTRKLCIIYDDPYATDSSSDEEEHFEKKPRKMKRMVRELALPIVSANNTVSLDETSNE SSNSKGLNKKRVLAKTPTLRRQPSCKYKGVRMRKWGKWAAEIRDPFKGVRLWLGTYNTAEEASQAYEKKKLEFEVMAKAL SDENNNKNNVVVSVEKNSFNYCVSSAAASISDSKSATLDDSESDLSHASPSSQAELDNTASNLIDIGMVSSKEAVETSTL KAELEMPDLSLLNMPAPPLCGAATPSQVELDWLTIDGFESYDIDDLVGGLKDIPICGFDGSGELPDFNFDDFGADDVAGL IEESLNIPVQ
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR31190
10 323 314 1.5E-79 –
PANTHER
PTHR31190:SF61
10 323 314 1.5E-79 –
CDD
cd00018
105 153 49 2.7077E-23
IPR001471
Pfam
PF00847
105 154 50 2.6E-10
IPR001471
Gene3D
G3DSA:3.30.730.10
105 160 56 1.1E-20
IPR036955
SMART
SM00380
106 170 65 5.5E-18
IPR001471
SUPERFAMILY
SSF54171
106 153 48 3.27E-16
IPR016177
ProSiteProfiles
PS51032
106 163 58 19.269
IPR001471
PRINTS
PR00367
107 118 12 4.1E-9
IPR001471
PRINTS
PR00367
129 145 17 4.1E-9
IPR001471
MobiDBLite
mobidb-lite
196 216 21 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0003700
Molecular function DNA-binding transcription factor activity A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons.
Subterm of
GO:0006355
Biological process Regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
Subterm of
Regulates

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Expression data

Expression pattern

Expression pattern of LotjaGi2g1v0277500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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