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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0279100 |
| Transcript ID | LotjaGi2g1v0279100.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | transcription factor-like protein; TAIR: AT1G68640.1 bZIP transcription factor family protein; Swiss-Prot: sp|Q41558|HBP1C_WHEAT Transcription factor HBP-1b(c1); TrEMBL-Plants: tr|K7K7E4|K7K7E4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0279100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:75063258..75069612) extracted from Lotus japonicus Gifu genome v1.2.
CAAATATAAACAATTCAAAAGTACTAATAAGCTATCCTCTTCTTAAAGATACATCAAGATTTTCCTTAGCTTCTCACACT TCTTTCTACTCATACTTAATCTGATTCTGATTCTTCTATCTGAACACAACAAAAATAGGATAAAGTTTCATGATCATGCT GTGAGAAATATGCAAGGATTCAAGACAGCTCAAGGAAATTCTCACCTCTATTGCCACCCCTCCTCCTTCTTGCTGAGGTA TATTACGTAGCTTCTCTGTGTCTTTGTTACCTTTGTGCTGTAAATACAAAGACTTTTGTGCTGAAACAGGGTACTCTGTT TTGAAACAGGGGAGATGATACTAGTAGAAACCATACGCGTTTCTCTGATCTTGGGGAGCTTCAACATTCCTCTAATATCT TTCAACAAGATGATGCTGTTGATTTAAGCTCAAGTAACTTACCATGTGTGTGTTCTTGTAACTAACTAGCATATTGTAAT CTCTGTTCTCTCTCTGCCTCTCTCTATGTGTGTGTGATGTTGTGTATAATTTTAGTTTTAAACTCTCTTGTAGGCTCCAT GTATAGTGTAAAGTCTTGCAATGTTGTTGGTGGTGGCAGTAACATGCAGTATGGGACACTGAACACGGTTGTTCATCCTC TTCCTTTTGTCTCTATTGTAGGATGATTATGGAAAATGTTTTGATTTTTCTTATCTAATTGAGCTTTTGGGTTGTGAATG GTGTGTTTGTGTAGAATCTTGGGTCGGCAGAGATTGTTTCAACTGGGGCAGGGTGCTTGGAGACAGGGCAGCAGCTCATG TATCACAAGGAAATCTCCATGGCCACCATGCCTATGGGGAATGGTCATGTTGAGAATTGGGCTGATTCTTCAGGCATGGC AGATAATAGCCAACAGACTGATGACACTTCCACAGATGTTGATACTGATGATAAAATCCAAGTGGGTATCCATTTCTCTA GTAAAAATTGTTATTTTCAGTCTCAGTTACTTTTCTGGATTTGCATTTTTATGCTGTTTTCTGTGAGAAATCTGCTACAT ATTTAGTAGAAGTGCCAATTAGTTCAACCATGAATTGAGTTTAGCAATTTGGAGTTATAGTTGCAATGCTTAATGTAGTA GATCCATGTTTTGGATGAATGAGTGTGTTGATCTCTGATAATGTATCTCTACTTTGTGTTAGTCCAATAGAGATAAACGT GGGACACATATGGTTGTTCACTCCAGGGATCAGACCAAGTCCAAACCTGAAGATCAGAAGGTTTCTATTTTTGACTAGGT TCAACTGGTTGTAGCTAATGATTTTGAGTTCCATAACTAATGTATATTTGTTTGAATACTCTTGTAGATCCTTCGTAGGC TGGCTCAGAATCGCGAGGCTGCTAAGAAGAGTAGATTAAGGAAAAAGGTAATTGCTTCAATGGGGGGATAAAGCTTGATT GCTCTCATTTGTAGACCTAGATATTTTGTCAGGTTAATTGGTACCCTATTTTTAGCATGTTCAGATTAGCTTCTATTTTC TTATGATGCCCATAAGTTACTCATTGAATCTTTTCACTAGGATTGATTTTGGCTTTAAAATCAATTCTAGAAAAATTAGC AAACACACACATCCATATCTTTATCTGCTTTTGTGGAAAATTAAAAGCTTGTAAATCTGGTGGTTGGCGATGAGATAATT TGCATTCCTAGTTATATTATGGTAGAGTGTCGCAAAGCTAGTTTTATTTTATACAACACCAGACATGCAGGCCACATAAC TATTCATGGTATTTAATTGCTGTTTCCTTGATGTGCTATTTTATATAAAATCTATATTCTAGGGGCTGCAAAGTCTTGGG ATTTTAAGGAAAACATATTTGAATAATATATCGGTTTTGGTTTTACAATAGGCATACGTGCAGCAGTTAGAGAACAGCCG ACTCAAGCTTGTGCAATTAGAGCAAGAGCTTCAAAGAGCACGTCAGCAGGTGTAAAACGTCAACAGTTTTCAATGGGCAT GTGTGGAAAATCTGAACTTGTTTTACTCATGGGTTTCTATTTCTATGTAGGGTGTATTTATGGCATCCCCTGGGGATCAA AGTCATTTGGCTGTTGGAGGAGCAAATGGTAATGAAAAGATGCTCTTTCGCGAGCATAATTTCCTTTAGTGCCAGAAACA TGATGCATATTTTGGTTACTTGCTTTTTATCATGTAAACAAAGTAATTTGCAAGTTAAATAGAAATTCACTGGAACTTGG TCAGTTATTTTAGGATATGATAAATTGCAGTAGATATAGAGTTGTATATTTGTCAAACTATGAGAATGATGTTGATGTTG TAGATCATTTATATATCGTACATCCAGATTGCAAGTGTTTATATCAAACTAAATTTCACAAGTGTTTGTATTAAGCTGGA TTTCTGGCTAGGTTCTTGGTTTTGTTGACATCAAGTTCTTTGATAACTTGCTTCAAAAGGGTAGGGTAGTAGTATTTGTA GCTAGAAGTTAGGGTTCAGTGGTTACCATTCTTTCTCCCTAATTATGAAGATTTCTTCTATTCTTAAGCTAAGATTTCAT GCCGAAAGTGATAGTGAACCGAGGTTTAATACTACGTGATTTATTAAAGTGAAATCTGTTGCAGTTGACTATATAGTTGT AGGGATTGTAACTTGAGGTTGTGTATTAAATCTTCAGGTGCCTCAGCCTTCGATATGGAATATGCTCATTGGGTTGATGA GCATCAACGCCTCCTCACTGATCTAAGATCAGCTTTAAATTCTCAGATGGGTGATAATGAACTACATCTTCTTGTTGATG GTGTCATGGCACATTATGATGAACTATTCAGGTTAAAGAGCCTAGGGGCGAAAGCTGATGTATTTCACATGCACAGTGGG CTGTGGAAGACACCTGCTGAAAGATGTTTCATGTGGCTTGGTGGATTCCGCTCCACTGAACTTCTCAAGGTAATTGACCG ATACTTCATATGCAAGTAACTTTCCCTGTGCTCATAGCATGTTTAGATAATCTTATTTTCCCTTAGAATCAATTGGAGAA GGATTTCCAAACATGCTATCACTTATTTATAAGTTTTACACGTTGAGTGTTGACTCTCATCTTCATCTTTTTTGGGATTC AGATAGTTAAAAACCACCTTGAGCCGTTAACAGAACCGCAGTTGATGGGCATTGACAATCTGCTGAGGTGTGCCCAGCAG GGTGAGGATGCATTAACTCAAGGCATGGAAGCATTGCAGCAAGCTCTTGTAGACACACTTTCCTCCACCTCCCTAGGACC TGCTGGTGCTGGAAATGTTGCTGATTACATGGGCCAAATGGCAATTGCAATGGGCAAGCTGGCCACATTGGAGAGTTTCC TTCACAGTGTAAGAAATGCAATCTTTGTGGAGAGCTTAAATTAACTAGTTTTATCTTTCTCTCAGTTCCTTCCTACATCA TAAAATCTTAGGATGTTCTAGGCATCAAAATACATGCATCATTAGTAAATAGTCAACAGCAAGTTTTTCAATTCATAGAT ACTACATTGTCAATAAAACTTATTCTAAAATGTTTCTGAATGACTTTTAGTTAGTCAAATTATAACATGTTTGCTTTCAC ATTATGCACAGAATCCAGGCACATTTACTCATAAGCTAAGTGTATGTTCAGTTCCCCGTTCGGGAGCCATAGAATTAATT CTCACTAACCAGAATCATCGTCAGGTGGTTATATACTTATATAGATATTTGGCAACTGAATTAGAGAATTGATTTTAGTT TCAAAAACAACTCAGCAGATAATCAAGAAAGAGTAGCTTCTACGGTGGACATCATCAATTACGAGATTTCATAAATGGAT TATACATTAATACCCCATACAAATCACTTTTTCCATTAACGCTTCCAAAGCATAAATCACTTCACTTTCAACTCACATTG ACTTATTTTTACAATGATCAATTCTATTCAAAATCAATTCTGACAATGCTTCAAACTTTGTGCATTCTTAGAAATCTTTC TACAGTAGATTCTAAAGTGAGAATCAATTCCGGGGAGAAGCTTTTGGGTTTCAAAATTAATTTGAAAGAATGAGACCCTG ATTCACACATGATTAAAACTTGTTACTTCTAATTAGAAATGATTCTAGAGCATCCAAACATGCCATTTGTATTGTATCCA TTATTTCCATACATTCCTTCACAAGTTTATATCCCTTGTGATCTGAGTCATATCTTGTGTTCTTAGGCTGATCTCGTGAA GCAACAGACTTTACAACAGTTGCAAAGAATATTGACGACGCGGCAGATGGCTCGTGCTCTCCTTGTCAGAAATGATTACA TTTCAAGATTACGAGCTCTTAGCTCATTATGGTTAGCGCGCCCTAGAGAGTAGTGTCTCTAACACTATAATGTCTATCAT CATTCATCATAATGTTGGTTCTCCCATGTTGGCTTCAAACTAATTGGCTATTTCTGTCTTAATAGGAGCTCTGTGATGAG TAGCTTGCCACCCTCAAATATAGAATAGAACGGCCTCGTTGTTTACTGAGAAGAAAGAAGAGAAACCTTTATCTTCGGTA GTTGCTGAGATCTAATTTTCTTTAGAAGAAGATAGGTTCATGACCTGAAATTTGTGCTGTATTGTAGGGATGTTCTGTAT ATTATTACCACATTCTAGTGGTTATTGTGCAATGTAACAAAAGTAAGGTTTGTATAAAATGCACAATTGCACTGCTAGAG GTATATTAGTATCATATTTTTAACATGATTAATCAATTTTGAAATGGCTATAATTTTCAATTAATGATTGATTTGAGGTG TGTTAAACTTTTCTTCTAAGTTATATACTTAATGGTGTAGGAAAAAAATACAAATTTCTGTCTGCACTTCCCTCAATTAA TTTAAGTTATGTACATAAGATATGTGGAATTGTGAGTACACATTTATTTATAGGATAGAAGTATTTTACAACTGCTTCCC ACCTTTGCTCTTGTAATTTTTCTATGCTCTAAAGTCTGATTGATTCAAGTAAGCTGAATCAGGAGTAAAGCTGCAATCTT CAATTTCTGCTAAGCAGAGATCTGAAACCGTTTATCTTCAGTACTTGTTCACCACTGGTTTATATATTTTTCTCCTGCTA TTCATTTTACCTGCAAAAATTCAGAAGCAACCCATATGAGGGAAAGATTCAATGTTTTTCCAGAGTTTCATCGTGTAAAT GTGATTTTGAACTACTTTGATTTTGTAAAAGTTTATTTTATATAGAATTTGTGTTAAAAGTGATGTGATTTAAGTAATAG ACTAATAGTAATGTTTTCAAGATAAGTGAACAAGAATTATTTTTGGAGATGTAACTATCAATAAAGATATGTAAGTAGTA TGAAAGATATCATAAAATTGAAGTTTGTCAAAATCATATGCGTATATAGTTGAGATTTTTTTTTATTGCAAAAACAACAA CATTTGGCCCCTTTTAAAATTATTGTCTAAGATGTAAATATTTTTCTTTTCAAATTTATCAAACATATCACAATAAAACC ATTGCATAATTCACTGTGGACAGTCACAAAAACTAATACAAGTTTCTTCTGTTTACCGTAATTTTGGCATATCGTGATTT TTAATAGTAGATTCAAATTTGTACTTCTAAACAAAGGACTAAAACTGGTCAAAGTTTGAAATACAGAATCAGCTAAAGAA TCTGTACCTTGTCTGTTGTTGTTTGGAGCTGATGAAGCAGCTTGGGGAATGAACACCCCAGTTCCTTTTCCATTCTTCCA AAGGCTCACAAGCCAATAAGGAGGTGAATCAGAGCTGTTTGTTTCCCAGGAACAGAAATTACTTGCAGGTGGAGATGTTC TGCTATAAACTGACCTGATTGAACCACCATAACCATTATCACCAACACTTGTGGACTTGTAACGTTTCCTTTCAAGGGAA TCTTCGTTATCTTCAGATGTCAGAAGCAAAATTTGTCTCCTAATCTCAGCATAGAAAGTATCATCATCATACTGTGTCTC CATAATAAGATTAATCAAGGTCTTCAACTTTAGACTAAAGTTTGTGTGAAGAAATTGTGACTTGAGGACTCAAAAGTTAT TCTTCATGCATATATAGATGAAAAAAATGAAATACAAAAGTAGAGTCATCTGTTTTTGGACAATGTTTCTGCATCAAACG TTCATCTCAAATAGTGTCCAAGTTAGAAGAATATGCTCCGTTTTCGTACGTTAACAGTTGTCTAGTACATTGATCGCATT AAATTTTAGAATACAATGATTGAAATTACAAGTCAAATTGAATGTATTAGAAAAATTACTTTGTACTTTTGTAGTGACAT AATGGTGATTATTCATCACCTAATGTCTACATCAA
CDS sequence (LotjaGi2g1v0279100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAAGGATTCAAGACAGCTCAAGGAAATTCTCACCTCTATTGCCACCCCTCCTCCTTCTTGCTGAGGGGAGATGATAC TAGTAGAAACCATACGCGTTTCTCTGATCTTGGGGAGCTTCAACATTCCTCTAATATCTTTCAACAAGATGATGCTGTTG ATTTAAGCTCAAGTAACTTACCATGCTCCATGTATAGTGTAAAGTCTTGCAATGTTGTTGGTGGTGGCAGTAACATGCAG TATGGGACACTGAACACGAATCTTGGGTCGGCAGAGATTGTTTCAACTGGGGCAGGGTGCTTGGAGACAGGGCAGCAGCT CATGTATCACAAGGAAATCTCCATGGCCACCATGCCTATGGGGAATGGTCATGTTGAGAATTGGGCTGATTCTTCAGGCA TGGCAGATAATAGCCAACAGACTGATGACACTTCCACAGATGTTGATACTGATGATAAAATCCAATCCAATAGAGATAAA CGTGGGACACATATGGTTGTTCACTCCAGGGATCAGACCAAGTCCAAACCTGAAGATCAGAAGATCCTTCGTAGGCTGGC TCAGAATCGCGAGGCTGCTAAGAAGAGTAGATTAAGGAAAAAGGCATACGTGCAGCAGTTAGAGAACAGCCGACTCAAGC TTGTGCAATTAGAGCAAGAGCTTCAAAGAGCACGTCAGCAGGGTGTATTTATGGCATCCCCTGGGGATCAAAGTCATTTG GCTGTTGGAGGAGCAAATGGTGCCTCAGCCTTCGATATGGAATATGCTCATTGGGTTGATGAGCATCAACGCCTCCTCAC TGATCTAAGATCAGCTTTAAATTCTCAGATGGGTGATAATGAACTACATCTTCTTGTTGATGGTGTCATGGCACATTATG ATGAACTATTCAGGTTAAAGAGCCTAGGGGCGAAAGCTGATGTATTTCACATGCACAGTGGGCTGTGGAAGACACCTGCT GAAAGATGTTTCATGTGGCTTGGTGGATTCCGCTCCACTGAACTTCTCAAGATAGTTAAAAACCACCTTGAGCCGTTAAC AGAACCGCAGTTGATGGGCATTGACAATCTGCTGAGGTGTGCCCAGCAGGGTGAGGATGCATTAACTCAAGGCATGGAAG CATTGCAGCAAGCTCTTGTAGACACACTTTCCTCCACCTCCCTAGGACCTGCTGGTGCTGGAAATGTTGCTGATTACATG GGCCAAATGGCAATTGCAATGGGCAAGCTGGCCACATTGGAGAGTTTCCTTCACAGTGCTGATCTCGTGAAGCAACAGAC TTTACAACAGTTGCAAAGAATATTGACGACGCGGCAGATGGCTCGTGCTCTCCTTGTCAGAAATGATTACATTTCAAGAT TACGAGCTCTTAGCTCATTATGGAGCTCTGTGATGAGTAGCTTGCCACCCTCAAATATAGAATAG
Protein sequence (LotjaGi2g1v0279100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQGFKTAQGNSHLYCHPSSFLLRGDDTSRNHTRFSDLGELQHSSNIFQQDDAVDLSSSNLPCSMYSVKSCNVVGGGSNMQ YGTLNTNLGSAEIVSTGAGCLETGQQLMYHKEISMATMPMGNGHVENWADSSGMADNSQQTDDTSTDVDTDDKIQSNRDK RGTHMVVHSRDQTKSKPEDQKILRRLAQNREAAKKSRLRKKAYVQQLENSRLKLVQLEQELQRARQQGVFMASPGDQSHL AVGGANGASAFDMEYAHWVDEHQRLLTDLRSALNSQMGDNELHLLVDGVMAHYDELFRLKSLGAKADVFHMHSGLWKTPA ERCFMWLGGFRSTELLKIVKNHLEPLTEPQLMGIDNLLRCAQQGEDALTQGMEALQQALVDTLSSTSLGPAGAGNVADYM GQMAIAMGKLATLESFLHSADLVKQQTLQQLQRILTTRQMARALLVRNDYISRLRALSSLWSSVMSSLPPSNIE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 18 | 462 | 445 | 5.8E-224 | – | |
| PANTHER | 18 | 462 | 445 | 5.8E-224 | – | |
| MobiDBLite | 122 | 178 | 57 | - | – | |
| MobiDBLite | 146 | 178 | 33 | - | – | |
| SMART | 177 | 240 | 64 | 2.1E-6 | ||
| ProSiteProfiles | 179 | 223 | 45 | 9.025 | ||
| CDD | 181 | 233 | 53 | 6.06692E-22 | – | |
| Gene3D | 181 | 229 | 49 | 1.6E-8 | – | |
| Pfam | 181 | 221 | 41 | 1.7E-6 | ||
| SUPERFAMILY | 182 | 224 | 43 | 5.06E-6 | – | |
| ProSitePatterns | 184 | 199 | 16 | - | ||
| Coils | 200 | 227 | 28 | - | – | |
| ProSiteProfiles | 248 | 464 | 217 | 29.963 | ||
| Pfam | 266 | 340 | 75 | 4.8E-29 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
| Biological process | Transcription, DNA-templated | The cellular synthesis of RNA on a template of DNA. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Molecular function | Sequence-specific DNA binding | Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding. |
Expression pattern of LotjaGi2g1v0279100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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