Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0279100 |
| Transcript ID | LotjaGi2g1v0279100.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | transcription factor-like protein; TAIR: AT1G68640.1 bZIP transcription factor family protein; Swiss-Prot: sp|Q41558|HBP1C_WHEAT Transcription factor HBP-1b(c1); TrEMBL-Plants: tr|K7K7E4|K7K7E4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0279100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:75063258..75069707) extracted from Lotus japonicus Gifu genome v1.2.
AAAATCCCGAGTCAGATAGCAATGATAATTAATAAACTCCACCCTATACTACTTCTACTACTACTACTAGTAGTAATGCT AGCAGTACCTCAAATCAAATATAAACAATTCAAAAGTACTAATAAGCTATCCTCTTCTTAAAGATACATCAAGATTTTCC TTAGCTTCTCACACTTCTTTCTACTCATACTTAATCTGATTCTGATTCTTCTATCTGAACACAACAAAAATAGGATAAAG TTTCATGATCATGCTGTGAGAAATATGCAAGGATTCAAGACAGCTCAAGGAAATTCTCACCTCTATTGCCACCCCTCCTC CTTCTTGCTGAGGTATATTACGTAGCTTCTCTGTGTCTTTGTTACCTTTGTGCTGTAAATACAAAGACTTTTGTGCTGAA ACAGGGTACTCTGTTTTGAAACAGGGGAGATGATACTAGTAGAAACCATACGCGTTTCTCTGATCTTGGGGAGCTTCAAC ATTCCTCTAATATCTTTCAACAAGATGATGCTGTTGATTTAAGCTCAAGTAACTTACCATGTGTGTGTTCTTGTAACTAA CTAGCATATTGTAATCTCTGTTCTCTCTCTGCCTCTCTCTATGTGTGTGTGATGTTGTGTATAATTTTAGTTTTAAACTC TCTTGTAGGCTCCATGTATAGTGTAAAGTCTTGCAATGTTGTTGGTGGTGGCAGTAACATGCAGTATGGGACACTGAACA CGGTTGTTCATCCTCTTCCTTTTGTCTCTATTGTAGGATGATTATGGAAAATGTTTTGATTTTTCTTATCTAATTGAGCT TTTGGGTTGTGAATGGTGTGTTTGTGTAGAATCTTGGGTCGGCAGAGATTGTTTCAACTGGGGCAGGGTGCTTGGAGACA GGGCAGCAGCTCATGTATCACAAGGAAATCTCCATGGCCACCATGCCTATGGGGAATGGTCATGTTGAGAATTGGGCTGA TTCTTCAGGCATGGCAGATAATAGCCAACAGACTGATGACACTTCCACAGATGTTGATACTGATGATAAAATCCAAGTGG GTATCCATTTCTCTAGTAAAAATTGTTATTTTCAGTCTCAGTTACTTTTCTGGATTTGCATTTTTATGCTGTTTTCTGTG AGAAATCTGCTACATATTTAGTAGAAGTGCCAATTAGTTCAACCATGAATTGAGTTTAGCAATTTGGAGTTATAGTTGCA ATGCTTAATGTAGTAGATCCATGTTTTGGATGAATGAGTGTGTTGATCTCTGATAATGTATCTCTACTTTGTGTTAGTCC AATAGAGATAAACGTGGGACACATATGGTTGTTCACTCCAGGGATCAGACCAAGTCCAAACCTGAAGATCAGAAGGTTTC TATTTTTGACTAGGTTCAACTGGTTGTAGCTAATGATTTTGAGTTCCATAACTAATGTATATTTGTTTGAATACTCTTGT AGATCCTTCGTAGGCTGGCTCAGAATCGCGAGGCTGCTAAGAAGAGTAGATTAAGGAAAAAGGTAATTGCTTCAATGGGG GGATAAAGCTTGATTGCTCTCATTTGTAGACCTAGATATTTTGTCAGGTTAATTGGTACCCTATTTTTAGCATGTTCAGA TTAGCTTCTATTTTCTTATGATGCCCATAAGTTACTCATTGAATCTTTTCACTAGGATTGATTTTGGCTTTAAAATCAAT TCTAGAAAAATTAGCAAACACACACATCCATATCTTTATCTGCTTTTGTGGAAAATTAAAAGCTTGTAAATCTGGTGGTT GGCGATGAGATAATTTGCATTCCTAGTTATATTATGGTAGAGTGTCGCAAAGCTAGTTTTATTTTATACAACACCAGACA TGCAGGCCACATAACTATTCATGGTATTTAATTGCTGTTTCCTTGATGTGCTATTTTATATAAAATCTATATTCTAGGGG CTGCAAAGTCTTGGGATTTTAAGGAAAACATATTTGAATAATATATCGGTTTTGGTTTTACAATAGGCATACGTGCAGCA GTTAGAGAACAGCCGACTCAAGCTTGTGCAATTAGAGCAAGAGCTTCAAAGAGCACGTCAGCAGGTGTAAAACGTCAACA GTTTTCAATGGGCATGTGTGGAAAATCTGAACTTGTTTTACTCATGGGTTTCTATTTCTATGTAGGGTGTATTTATGGCA TCCCCTGGGGATCAAAGTCATTTGGCTGTTGGAGGAGCAAATGGTAATGAAAAGATGCTCTTTCGCGAGCATAATTTCCT TTAGTGCCAGAAACATGATGCATATTTTGGTTACTTGCTTTTTATCATGTAAACAAAGTAATTTGCAAGTTAAATAGAAA TTCACTGGAACTTGGTCAGTTATTTTAGGATATGATAAATTGCAGTAGATATAGAGTTGTATATTTGTCAAACTATGAGA ATGATGTTGATGTTGTAGATCATTTATATATCGTACATCCAGATTGCAAGTGTTTATATCAAACTAAATTTCACAAGTGT TTGTATTAAGCTGGATTTCTGGCTAGGTTCTTGGTTTTGTTGACATCAAGTTCTTTGATAACTTGCTTCAAAAGGGTAGG GTAGTAGTATTTGTAGCTAGAAGTTAGGGTTCAGTGGTTACCATTCTTTCTCCCTAATTATGAAGATTTCTTCTATTCTT AAGCTAAGATTTCATGCCGAAAGTGATAGTGAACCGAGGTTTAATACTACGTGATTTATTAAAGTGAAATCTGTTGCAGT TGACTATATAGTTGTAGGGATTGTAACTTGAGGTTGTGTATTAAATCTTCAGGTGCCTCAGCCTTCGATATGGAATATGC TCATTGGGTTGATGAGCATCAACGCCTCCTCACTGATCTAAGATCAGCTTTAAATTCTCAGATGGGTGATAATGAACTAC ATCTTCTTGTTGATGGTGTCATGGCACATTATGATGAACTATTCAGGTTAAAGAGCCTAGGGGCGAAAGCTGATGTATTT CACATGCACAGTGGGCTGTGGAAGACACCTGCTGAAAGATGTTTCATGTGGCTTGGTGGATTCCGCTCCACTGAACTTCT CAAGGTAATTGACCGATACTTCATATGCAAGTAACTTTCCCTGTGCTCATAGCATGTTTAGATAATCTTATTTTCCCTTA GAATCAATTGGAGAAGGATTTCCAAACATGCTATCACTTATTTATAAGTTTTACACGTTGAGTGTTGACTCTCATCTTCA TCTTTTTTGGGATTCAGATAGTTAAAAACCACCTTGAGCCGTTAACAGAACCGCAGTTGATGGGCATTGACAATCTGCTG AGGTGTGCCCAGCAGGGTGAGGATGCATTAACTCAAGGCATGGAAGCATTGCAGCAAGCTCTTGTAGACACACTTTCCTC CACCTCCCTAGGACCTGCTGGTGCTGGAAATGTTGCTGATTACATGGGCCAAATGGCAATTGCAATGGGCAAGCTGGCCA CATTGGAGAGTTTCCTTCACAGTGTAAGAAATGCAATCTTTGTGGAGAGCTTAAATTAACTAGTTTTATCTTTCTCTCAG TTCCTTCCTACATCATAAAATCTTAGGATGTTCTAGGCATCAAAATACATGCATCATTAGTAAATAGTCAACAGCAAGTT TTTCAATTCATAGATACTACATTGTCAATAAAACTTATTCTAAAATGTTTCTGAATGACTTTTAGTTAGTCAAATTATAA CATGTTTGCTTTCACATTATGCACAGAATCCAGGCACATTTACTCATAAGCTAAGTGTATGTTCAGTTCCCCGTTCGGGA GCCATAGAATTAATTCTCACTAACCAGAATCATCGTCAGGTGGTTATATACTTATATAGATATTTGGCAACTGAATTAGA GAATTGATTTTAGTTTCAAAAACAACTCAGCAGATAATCAAGAAAGAGTAGCTTCTACGGTGGACATCATCAATTACGAG ATTTCATAAATGGATTATACATTAATACCCCATACAAATCACTTTTTCCATTAACGCTTCCAAAGCATAAATCACTTCAC TTTCAACTCACATTGACTTATTTTTACAATGATCAATTCTATTCAAAATCAATTCTGACAATGCTTCAAACTTTGTGCAT TCTTAGAAATCTTTCTACAGTAGATTCTAAAGTGAGAATCAATTCCGGGGAGAAGCTTTTGGGTTTCAAAATTAATTTGA AAGAATGAGACCCTGATTCACACATGATTAAAACTTGTTACTTCTAATTAGAAATGATTCTAGAGCATCCAAACATGCCA TTTGTATTGTATCCATTATTTCCATACATTCCTTCACAAGTTTATATCCCTTGTGATCTGAGTCATATCTTGTGTTCTTA GGCTGATCTCGTGAAGCAACAGACTTTACAACAGTTGCAAAGAATATTGACGACGCGGCAGATGGCTCGTGCTCTCCTTG TCAGAAATGATTACATTTCAAGATTACGAGCTCTTAGCTCATTATGGTTAGCGCGCCCTAGAGAGTAGTGTCTCTAACAC TATAATGTCTATCATCATTCATCATAATGTTGGTTCTCCCATGTTGGCTTCAAACTAATTGGCTATTTCTGTCTTAATAG GAGCTCTGTGATGAGTAGCTTGCCACCCTCAAATATAGAATAGAACGGCCTCGTTGTTTACTGAGAAGAAAGAAGAGAAA CCTTTATCTTCGGTAGTTGCTGAGATCTAATTTTCTTTAGAAGAAGATAGGTTCATGACCTGAAATTTGTGCTGTATTGT AGGGATGTTCTGTATATTATTACCACATTCTAGTGGTTATTGTGCAATGTAACAAAAGTAAGGTTTGTATAAAATGCACA ATTGCACTGCTAGAGGTATATTAGTATCATATTTTTAACATGATTAATCAATTTTGAAATGGCTATAATTTTCAATTAAT GATTGATTTGAGGTGTGTTAAACTTTTCTTCTAAGTTATATACTTAATGGTGTAGGAAAAAAATACAAATTTCTGTCTGC ACTTCCCTCAATTAATTTAAGTTATGTACATAAGATATGTGGAATTGTGAGTACACATTTATTTATAGGATAGAAGTATT TTACAACTGCTTCCCACCTTTGCTCTTGTAATTTTTCTATGCTCTAAAGTCTGATTGATTCAAGTAAGCTGAATCAGGAG TAAAGCTGCAATCTTCAATTTCTGCTAAGCAGAGATCTGAAACCGTTTATCTTCAGTACTTGTTCACCACTGGTTTATAT ATTTTTCTCCTGCTATTCATTTTACCTGCAAAAATTCAGAAGCAACCCATATGAGGGAAAGATTCAATGTTTTTCCAGAG TTTCATCGTGTAAATGTGATTTTGAACTACTTTGATTTTGTAAAAGTTTATTTTATATAGAATTTGTGTTAAAAGTGATG TGATTTAAGTAATAGACTAATAGTAATGTTTTCAAGATAAGTGAACAAGAATTATTTTTGGAGATGTAACTATCAATAAA GATATGTAAGTAGTATGAAAGATATCATAAAATTGAAGTTTGTCAAAATCATATGCGTATATAGTTGAGATTTTTTTTTA TTGCAAAAACAACAACATTTGGCCCCTTTTAAAATTATTGTCTAAGATGTAAATATTTTTCTTTTCAAATTTATCAAACA TATCACAATAAAACCATTGCATAATTCACTGTGGACAGTCACAAAAACTAATACAAGTTTCTTCTGTTTACCGTAATTTT GGCATATCGTGATTTTTAATAGTAGATTCAAATTTGTACTTCTAAACAAAGGACTAAAACTGGTCAAAGTTTGAAATACA GAATCAGCTAAAGAATCTGTACCTTGTCTGTTGTTGTTTGGAGCTGATGAAGCAGCTTGGGGAATGAACACCCCAGTTCC TTTTCCATTCTTCCAAAGGCTCACAAGCCAATAAGGAGGTGAATCAGAGCTGTTTGTTTCCCAGGAACAGAAATTACTTG CAGGTGGAGATGTTCTGCTATAAACTGACCTGATTGAACCACCATAACCATTATCACCAACACTTGTGGACTTGTAACGT TTCCTTTCAAGGGAATCTTCGTTATCTTCAGATGTCAGAAGCAAAATTTGTCTCCTAATCTCAGCATAGAAAGTATCATC ATCATACTGTGTCTCCATAATAAGATTAATCAAGGTCTTCAACTTTAGACTAAAGTTTGTGTGAAGAAATTGTGACTTGA GGACTCAAAAGTTATTCTTCATGCATATATAGATGAAAAAAATGAAATACAAAAGTAGAGTCATCTGTTTTTGGACAATG TTTCTGCATCAAACGTTCATCTCAAATAGTGTCCAAGTTAGAAGAATATGCTCCGTTTTCGTACGTTAACAGTTGTCTAG TACATTGATCGCATTAAATTTTAGAATACAATGATTGAAATTACAAGTCAAATTGAATGTATTAGAAAAATTACTTTGTA CTTTTGTAGTGACATAATGGTGATTATTCATCACCTAATGTCTACATCAA
CDS sequence (LotjaGi2g1v0279100.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAAGGATTCAAGACAGCTCAAGGAAATTCTCACCTCTATTGCCACCCCTCCTCCTTCTTGCTGAGGGGAGATGATAC TAGTAGAAACCATACGCGTTTCTCTGATCTTGGGGAGCTTCAACATTCCTCTAATATCTTTCAACAAGATGATGCTGTTG ATTTAAGCTCAAGTAACTTACCATGCTCCATGTATAGTGTAAAGTCTTGCAATGTTGTTGGTGGTGGCAGTAACATGCAG TATGGGACACTGAACACGAATCTTGGGTCGGCAGAGATTGTTTCAACTGGGGCAGGGTGCTTGGAGACAGGGCAGCAGCT CATGTATCACAAGGAAATCTCCATGGCCACCATGCCTATGGGGAATGGTCATGTTGAGAATTGGGCTGATTCTTCAGGCA TGGCAGATAATAGCCAACAGACTGATGACACTTCCACAGATGTTGATACTGATGATAAAATCCAATCCAATAGAGATAAA CGTGGGACACATATGGTTGTTCACTCCAGGGATCAGACCAAGTCCAAACCTGAAGATCAGAAGATCCTTCGTAGGCTGGC TCAGAATCGCGAGGCTGCTAAGAAGAGTAGATTAAGGAAAAAGGCATACGTGCAGCAGTTAGAGAACAGCCGACTCAAGC TTGTGCAATTAGAGCAAGAGCTTCAAAGAGCACGTCAGCAGGGTGTATTTATGGCATCCCCTGGGGATCAAAGTCATTTG GCTGTTGGAGGAGCAAATGGTGCCTCAGCCTTCGATATGGAATATGCTCATTGGGTTGATGAGCATCAACGCCTCCTCAC TGATCTAAGATCAGCTTTAAATTCTCAGATGGGTGATAATGAACTACATCTTCTTGTTGATGGTGTCATGGCACATTATG ATGAACTATTCAGGTTAAAGAGCCTAGGGGCGAAAGCTGATGTATTTCACATGCACAGTGGGCTGTGGAAGACACCTGCT GAAAGATGTTTCATGTGGCTTGGTGGATTCCGCTCCACTGAACTTCTCAAGATAGTTAAAAACCACCTTGAGCCGTTAAC AGAACCGCAGTTGATGGGCATTGACAATCTGCTGAGGTGTGCCCAGCAGGGTGAGGATGCATTAACTCAAGGCATGGAAG CATTGCAGCAAGCTCTTGTAGACACACTTTCCTCCACCTCCCTAGGACCTGCTGGTGCTGGAAATGTTGCTGATTACATG GGCCAAATGGCAATTGCAATGGGCAAGCTGGCCACATTGGAGAGTTTCCTTCACAGTGCTGATCTCGTGAAGCAACAGAC TTTACAACAGTTGCAAAGAATATTGACGACGCGGCAGATGGCTCGTGCTCTCCTTGTCAGAAATGATTACATTTCAAGAT TACGAGCTCTTAGCTCATTATGGTTAGCGCGCCCTAGAGAGAGCTCTGTGATGAGTAGCTTGCCACCCTCAAATATAGAA TAG
Protein sequence (LotjaGi2g1v0279100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQGFKTAQGNSHLYCHPSSFLLRGDDTSRNHTRFSDLGELQHSSNIFQQDDAVDLSSSNLPCSMYSVKSCNVVGGGSNMQ YGTLNTNLGSAEIVSTGAGCLETGQQLMYHKEISMATMPMGNGHVENWADSSGMADNSQQTDDTSTDVDTDDKIQSNRDK RGTHMVVHSRDQTKSKPEDQKILRRLAQNREAAKKSRLRKKAYVQQLENSRLKLVQLEQELQRARQQGVFMASPGDQSHL AVGGANGASAFDMEYAHWVDEHQRLLTDLRSALNSQMGDNELHLLVDGVMAHYDELFRLKSLGAKADVFHMHSGLWKTPA ERCFMWLGGFRSTELLKIVKNHLEPLTEPQLMGIDNLLRCAQQGEDALTQGMEALQQALVDTLSSTSLGPAGAGNVADYM GQMAIAMGKLATLESFLHSADLVKQQTLQQLQRILTTRQMARALLVRNDYISRLRALSSLWLARPRESSVMSSLPPSNIE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 18 | 467 | 450 | 7.0E-229 | – | |
| PANTHER | 18 | 467 | 450 | 7.0E-229 | – | |
| MobiDBLite | 122 | 178 | 57 | - | – | |
| MobiDBLite | 146 | 178 | 33 | - | – | |
| SMART | 177 | 240 | 64 | 2.1E-6 | ||
| ProSiteProfiles | 179 | 223 | 45 | 9.025 | ||
| CDD | 181 | 233 | 53 | 7.88656E-22 | – | |
| Pfam | 181 | 221 | 41 | 1.7E-6 | ||
| Gene3D | 181 | 229 | 49 | 1.6E-8 | – | |
| SUPERFAMILY | 182 | 224 | 43 | 5.13E-6 | – | |
| ProSitePatterns | 184 | 199 | 16 | - | ||
| Coils | 200 | 227 | 28 | - | – | |
| ProSiteProfiles | 248 | 464 | 217 | 30.307 | ||
| Pfam | 266 | 340 | 75 | 4.9E-29 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
| Biological process | Transcription, DNA-templated | The cellular synthesis of RNA on a template of DNA. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Molecular function | Sequence-specific DNA binding | Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding. |
Expression pattern of LotjaGi2g1v0279100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…