Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0280700 |
| Transcript ID | LotjaGi2g1v0280700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Zinc finger family protein; TAIR: AT1G13290.1 C2H2-like zinc finger protein; Swiss-Prot: sp|Q9FX68|ZWIP6_ARATH Zinc finger protein WIP6; TrEMBL-Plants: tr|V7C7J4|V7C7J4_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0280700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:75255585..75257792) extracted from Lotus japonicus Gifu genome v1.2.
CAGAAATTCAATATCTCAGATGACAAAAGCCAAAGCATCCACAAGATTTGTTTATTTATTGCCTTTCTCGTCCCCACTTT CCATCTCACACAGTCAAGCCAAAACCCTCTCTTTCTCTCACTCCCTAGCTCTCTCTCTCTCTCGGTCCCTCATCACTACT CTATTCTCTCCTAGCTGCTACACTACACCCTCTCATCATCATATAATATAGTACATCACCCCATCAACCATATATCTCAC CATGCAAGCTTATCATCACTCTTTCTCCTACATATCCTCTTGTGAACCTGATGAGGCTGTTGATGAAGCCTCCATCTCCC TCTCTCTTGGTCCTCCTGGCCAACACAACCCAAAAATCCCCTCCTCAAAGCACCCTGCCACCACCCTGCACCATCAGCAA AACCCTACCTCTGATGATGACCACAGTGGTGTAACAGTGGCTCTTCATATTGGCCTTCCCACAAACATTTCACCTACAAC AGACACAACCCCCATCAGCAAACCTGATCATAATCAACATCATCATCTGGCCTCTTCAGCTCCTGTTCAGGGTCAGTATT GGATCCCTTCTCCTGCTCAAATCCTCATTGGACCAACCCAGTTCTCCTGCACTGTCTGCAACAAAATGTTCAACCGTTAC AACAATATGCAGGTTAGTCAACAAAACAAAACAAAATCTCAAACTCATACATGGCTAGCTAGCCCAACACACATTCACAA GCATTTATTGCATTCATAGATAAACACATTTGAAAAAAACACCACTTTCTTTTCTCTCAAAAAGACAAAAATATATACAA GTAAAGGGAACTGTTACCCTCTCGGCCTCTCCAGTAAAGGTCGATTCGAAGCCATTAGTTGATAATTCAATACCATCTTG AAATATTATTTTATACCATATTATGTTTTCTCATAATCAATTTTACTACTAAGAAACTACTTAGGGGATGTTTGGATACA CGAAACAAAATTATGGTAAGCCAAAATCATGGTTGAGAGAAGCAACTTCTCCTAACTTTTGTGATTGTTCACCGTTATTT TAACTCCATCCTGATTTCCCAGTATCCAAACCTGCACTGACATAAGCTTCTTCAAAGAATTAATTTTCACTTCATAATCA AAAGATTTCCAAACGCACTCCCTCATTATAACAAAAACAAATCAAGCACAAAAGTTTTGCTGTCTTATTACACTTTGTTG TTTTTCATTCATGAATAACAGAATAAGTGTACTAATTAAAGTCACACACAAGAGTTTAAAATGTGTTACAACTTTTGAAA TAGTGGACTGCAAGCAAATACATTTGCAAGAACCTTAGAAACCTTAATGTTGTGGTTGTATTCTAAATTTTATCAAACAC TTATCATGCACAAAATTTGAAATTTCCCTAATGCATTGTCACATTGCAGATGCATATGTGGGGACATGGATCACAGTACA GGAAAGGACCTGAATCACTAAGAGGAGCAAAACCAGCTTCTTCAATGCTGAGGCTACCCTGCTACTGTTGTGCAGAGGGT TGCAAGAATAACATAGATCACCCAAGGTCAAGGCCACTCAAGGACTTCAGGACCCTCCAGACACACTACAAGAGGAAGCA CGGCGCGAAGCCGTTCGGGTGCAGGAAGTGCGGGAAGCCCTTCGCGGTCCGAGGCGATTGGAGGACACATGAGAAGAACT GCGGCAAGCTCTGGTTCTGCATCTGCGGCTCTGATTTCAAGCACAAGAGGTCCCTCAAGGACCATGTCCGTGCCTTTGGT GATGGCCACGCCCCACACACTGTGGAGAGCTGTGATCAGATGGGGGATGAACTTGACTTGTTTGGAGAGGATGAAGAGGA TGAGGAATTAGAAGATGATGATGAAGATTTGTTTGATGATGATAACAACAATGCAGGTGGTGTTTGTTTTTAGTTAATAG AAAACATGGTAGGTGTGTGTTAGTTTAGTTTGTTAGATTTTTTTTCATGAAAACACATGTATTCTCTACTGAGTCAATCA TGTTCTCGAGCCGAGTAAGATTACTATGAGCATTGAATCTCTTCTAACAAATATTTAATGCAGTTGCATTTACATAAACT TGAATTCAAGACATCTATTTAAATTGGAATTATGCGATAGTTTTTGGTTGTAACTAAGATTTGAATTAATGGATTAAGAC TAGAGAGAGAAAGAGAAGAAGGGTGGGAGAAGATGGAGACAAACAGTG
CDS sequence (LotjaGi2g1v0280700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAAGCTTATCATCACTCTTTCTCCTACATATCCTCTTGTGAACCTGATGAGGCTGTTGATGAAGCCTCCATCTCCCT CTCTCTTGGTCCTCCTGGCCAACACAACCCAAAAATCCCCTCCTCAAAGCACCCTGCCACCACCCTGCACCATCAGCAAA ACCCTACCTCTGATGATGACCACAGTGGTGTAACAGTGGCTCTTCATATTGGCCTTCCCACAAACATTTCACCTACAACA GACACAACCCCCATCAGCAAACCTGATCATAATCAACATCATCATCTGGCCTCTTCAGCTCCTGTTCAGGGTCAGTATTG GATCCCTTCTCCTGCTCAAATCCTCATTGGACCAACCCAGTTCTCCTGCACTGTCTGCAACAAAATGTTCAACCGTTACA ACAATATGCAGATGCATATGTGGGGACATGGATCACAGTACAGGAAAGGACCTGAATCACTAAGAGGAGCAAAACCAGCT TCTTCAATGCTGAGGCTACCCTGCTACTGTTGTGCAGAGGGTTGCAAGAATAACATAGATCACCCAAGGTCAAGGCCACT CAAGGACTTCAGGACCCTCCAGACACACTACAAGAGGAAGCACGGCGCGAAGCCGTTCGGGTGCAGGAAGTGCGGGAAGC CCTTCGCGGTCCGAGGCGATTGGAGGACACATGAGAAGAACTGCGGCAAGCTCTGGTTCTGCATCTGCGGCTCTGATTTC AAGCACAAGAGGTCCCTCAAGGACCATGTCCGTGCCTTTGGTGATGGCCACGCCCCACACACTGTGGAGAGCTGTGATCA GATGGGGGATGAACTTGACTTGTTTGGAGAGGATGAAGAGGATGAGGAATTAGAAGATGATGATGAAGATTTGTTTGATG ATGATAACAACAATGCAGGTGGTGTTTGTTTTTAG
Protein sequence (LotjaGi2g1v0280700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQAYHHSFSYISSCEPDEAVDEASISLSLGPPGQHNPKIPSSKHPATTLHHQQNPTSDDDHSGVTVALHIGLPTNISPTT DTTPISKPDHNQHHHLASSAPVQGQYWIPSPAQILIGPTQFSCTVCNKMFNRYNNMQMHMWGHGSQYRKGPESLRGAKPA SSMLRLPCYCCAEGCKNNIDHPRSRPLKDFRTLQTHYKRKHGAKPFGCRKCGKPFAVRGDWRTHEKNCGKLWFCICGSDF KHKRSLKDHVRAFGDGHAPHTVESCDQMGDELDLFGEDEEDEELEDDDEDLFDDDNNNAGGVCF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 12 | 289 | 278 | 3.5E-145 | – | |
| PANTHER | 12 | 289 | 278 | 3.5E-145 | – | |
| MobiDBLite | 25 | 98 | 74 | - | – | |
| MobiDBLite | 40 | 61 | 22 | - | – | |
| MobiDBLite | 72 | 86 | 15 | - | – | |
| SUPERFAMILY | 117 | 142 | 26 | 3.57E-5 | ||
| Gene3D | 119 | 143 | 25 | 8.1E-6 | – | |
| SMART | 121 | 143 | 23 | 0.19 | ||
| ProSiteProfiles | 121 | 148 | 28 | 10.055 | ||
| Pfam | 121 | 140 | 20 | 0.011 | ||
| ProSitePatterns | 123 | 143 | 21 | - | ||
| Gene3D | 163 | 253 | 91 | 8.2E-6 | – | |
| SMART | 169 | 201 | 33 | 200.0 | ||
| SUPERFAMILY | 189 | 226 | 38 | 1.33E-5 | ||
| SMART | 206 | 226 | 21 | 140.0 | ||
| MobiDBLite | 276 | 304 | 29 | - | – | |
| MobiDBLite | 276 | 295 | 20 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi2g1v0280700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…