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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0281100 |
| Transcript ID | LotjaGi2g1v0281100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | AP2/B3 transcription factor family protein; TAIR: AT1G25560.1 AP2/B3 transcription factor family protein; Swiss-Prot: sp|Q9C6M5|RAVL1_ARATH AP2/ERF and B3 domain-containing transcription repressor TEM1; TrEMBL-Plants: tr|I1J6Q5|I1J6Q5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0281100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:75289519..75292123) extracted from Lotus japonicus Gifu genome v1.2.
TTCTCCTTAATTAAAGCAGCAACATCAAATAATAGAGCTGATTTTTAATTGAGAGGTACATGAAGGGAGCATAGACCATG CTGCAGGATTGATTCTGCTGCACAGTACATACCAGCAAAGTTCAGGGGGGATGAATGAACTTCACTAAATCAATGTCCAC CTCCCTCAATCTCCATGTGAACCCCATCAACTTGATAACATGTGGGCCCTATCTCACATACAAAGCCCACAACTCAAACA TTCACTTGAGTCATGACATTGCAACAGAACATAGACCCACCCTTTTTACCCTTACCCCTCTCCCTTCCATTCCTCACAGT CCCCACTTTCACACCCATGAATCTTCCCAGTCCCTTACCCTCACCCATCTCAGTTGACCCACACACACACACCATCCCAT CCCAAAACCCCACTCCACAACCCCAAATTTATTAAGAATTAAACTAAGCAACTAGTTATCACCTCATCATTGAATAAAAT TTTCCAACTAAGCATATTTCATTTTCCACTTATGATATTAAATTAAATACTACTAGCTAGCTCACTTACCAGGGACAGGT TCCCTCTATATATATTCCCTCCTCAAACAACTCCTATTCCCACCCAAACCAAACACATTTCTCTCTTCTCTTCTCTTGCA AAATACTCACTTCTCAGTCAAACACTTCATTCAAACATATAATTAACAAAAATGGATGGATCAGGCAGTTGCATAGACGA AAGCACCACCACCGAATCACTCTCGATTACCTTGTCCCCGGCGATGAAACCGACAACTCCGCCGCCACCAAACAGCCTCT GCCGTGTCGGCAGCGGGGCAAGCGCGGTTGTGGATCCTGAAGGATCCGCCGGCGCCGGAGAAGCTGAATCCCGGAAGCTC CCGTCGTCGAAATACAAAGGCGTTGTGCCGCAGCCCAACGGGCGCTGGGGAGCGCAGATTTACGAGAAGCACCAGCGCGT GTGGCTGGGGACATTCAACGAGGAGGACGAGGCCGCCAGGGCCTACGACGTCGCCGCGCAAAGGTTCCGCGGCAAGGACG CCGTGACTAATTTTAAGCCGCTCGCCGTCTCCGACGGCGGCGACTGCGGCGGCGACGATGATGATGCTGAGGCTGAGTTT CTTAACTCGCACTCGAAATCTGAGATCGTCGACATGCTGAGAAAGCATACTTACAATGACGAGCTGGAGCAGAGCAAGCG CAGCCGCGGACTCGTGGGCCGGAAACGCGCCGCCGGGGAAAATTTATCCGGTTCGGCGCAGGGCGCGTGTGTGAGGAAGG CGCGTGAGCCTCTGTTTGAGAAGGCAGTTACCCCGAGCGATGTAGGGAAGCTGAACCGTTTGGTGATACCGAAGCAGCAT GCGGAGAAGCACTTTCCGTTACAGAGCGTGGGCGTGGCCGGGGGCGTGGCGGGAAACGTGTCCGCGGCGGCGAAGGGGGT GCTTTTGAACTTTGAGGATGTTGGAGGGAAAGTGTGGCGGTTTAGGTACTCGTATTGGAATAGTAGCCAGAGCTACGTGC TTACCAAAGGGTGGAGCCGGTTCGTTAAGGAGAAGTGCCTCAAAGCCGGTGACTCGGTTTGCTTCCATCGGTCAACCGGG CCAGACAGACAGCTCTTCATTGATTTTAAGGTCAGGAGGACCAATGCCAATGAAACAGCTGTGCTGTTCGGCTCGGTCGG ACCTGTAGTTGAGCCGGTCCAAATGGTTCGGCTCTTCGGGGTTAACATTTTGAAACTGCCCGGATCAGATGCTAATGCTA ATAACAATAATAATCACAATGCTGCTGCTCCTATGGCTGGGTGCTGCAATGGCAAGAGGAAAGAAATGGAACTGTTCACC TTTGAATGTATCAAGAAGCCTAAGATCATTGGAGCTTTGTAACATTACGTTAATTAGTTTCTGTTTTTCTTTGTTTTTTT TTTTAAAGTTTTGTGACTATGATGAAAAGAAGAATGGGGGTGGAGAATGGTGGTGTAGATGCAAGTTGCAAAAGGTGAAT TGTATATTACTTAATTAGAAGAAAAAGGAAGAAGCTCCTGAAATTAGTTGTAACAACTGTACAAGGAAAAGAAGGTTAAC TGTTTATTAATTGTATATGTTCATAGATGTTCATCATGCATAGATTTTGTGTACTACTCCATGCTCAAGTGTTATTTTTT CTCTGTGGAGCAGACAGATCCAAAAACTTTGTATGTACAATTACCCAAGGTGTTGTGAATTAAAGGATCCATTCTTGTGT GAGTGAGTTTGGAAAAATAAATGAGTTGATTTCCATGATGCATAGTTTTGGCAATGATCATAATGATAGAGTATTTTGTT GGATTGTGAATATTATTACTATGATTATTAGGAATAATAGTGATATTCGTGCATGAATTGAAGAGGGGGACCCGACCCCA GATGAGGGATGGCCAAGGAAAGTGTGAACAAGTTGATAATGAGACATTTGTCCAATAAAGAAAGAGGCTGGTTGGCAAGT GGGCATGGTTGAGTACACTGTACATGGCCACATCGGTTCCAATCTTAAAAACCTTCCCAATGTACACGTTGCTTTTGGAA CGGTCAACTTTACATGAAGCTTGCTTTGTTCGTGGCATCTAAGAA
CDS sequence (LotjaGi2g1v0281100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATGGATCAGGCAGTTGCATAGACGAAAGCACCACCACCGAATCACTCTCGATTACCTTGTCCCCGGCGATGAAACC GACAACTCCGCCGCCACCAAACAGCCTCTGCCGTGTCGGCAGCGGGGCAAGCGCGGTTGTGGATCCTGAAGGATCCGCCG GCGCCGGAGAAGCTGAATCCCGGAAGCTCCCGTCGTCGAAATACAAAGGCGTTGTGCCGCAGCCCAACGGGCGCTGGGGA GCGCAGATTTACGAGAAGCACCAGCGCGTGTGGCTGGGGACATTCAACGAGGAGGACGAGGCCGCCAGGGCCTACGACGT CGCCGCGCAAAGGTTCCGCGGCAAGGACGCCGTGACTAATTTTAAGCCGCTCGCCGTCTCCGACGGCGGCGACTGCGGCG GCGACGATGATGATGCTGAGGCTGAGTTTCTTAACTCGCACTCGAAATCTGAGATCGTCGACATGCTGAGAAAGCATACT TACAATGACGAGCTGGAGCAGAGCAAGCGCAGCCGCGGACTCGTGGGCCGGAAACGCGCCGCCGGGGAAAATTTATCCGG TTCGGCGCAGGGCGCGTGTGTGAGGAAGGCGCGTGAGCCTCTGTTTGAGAAGGCAGTTACCCCGAGCGATGTAGGGAAGC TGAACCGTTTGGTGATACCGAAGCAGCATGCGGAGAAGCACTTTCCGTTACAGAGCGTGGGCGTGGCCGGGGGCGTGGCG GGAAACGTGTCCGCGGCGGCGAAGGGGGTGCTTTTGAACTTTGAGGATGTTGGAGGGAAAGTGTGGCGGTTTAGGTACTC GTATTGGAATAGTAGCCAGAGCTACGTGCTTACCAAAGGGTGGAGCCGGTTCGTTAAGGAGAAGTGCCTCAAAGCCGGTG ACTCGGTTTGCTTCCATCGGTCAACCGGGCCAGACAGACAGCTCTTCATTGATTTTAAGGTCAGGAGGACCAATGCCAAT GAAACAGCTGTGCTGTTCGGCTCGGTCGGACCTGTAGTTGAGCCGGTCCAAATGGTTCGGCTCTTCGGGGTTAACATTTT GAAACTGCCCGGATCAGATGCTAATGCTAATAACAATAATAATCACAATGCTGCTGCTCCTATGGCTGGGTGCTGCAATG GCAAGAGGAAAGAAATGGAACTGTTCACCTTTGAATGTATCAAGAAGCCTAAGATCATTGGAGCTTTGTAA
Protein sequence (LotjaGi2g1v0281100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDGSGSCIDESTTTESLSITLSPAMKPTTPPPPNSLCRVGSGASAVVDPEGSAGAGEAESRKLPSSKYKGVVPQPNGRWG AQIYEKHQRVWLGTFNEEDEAARAYDVAAQRFRGKDAVTNFKPLAVSDGGDCGGDDDDAEAEFLNSHSKSEIVDMLRKHT YNDELEQSKRSRGLVGRKRAAGENLSGSAQGACVRKAREPLFEKAVTPSDVGKLNRLVIPKQHAEKHFPLQSVGVAGGVA GNVSAAAKGVLLNFEDVGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKCLKAGDSVCFHRSTGPDRQLFIDFKVRRTNAN ETAVLFGSVGPVVEPVQMVRLFGVNILKLPGSDANANNNNNHNAAAPMAGCCNGKRKEMELFTFECIKKPKIIGAL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 395 | 395 | 2.6E-174 | – | |
| PANTHER | 1 | 395 | 395 | 2.6E-174 | – | |
| MobiDBLite | 1 | 24 | 24 | - | – | |
| MobiDBLite | 1 | 74 | 74 | - | – | |
| SUPERFAMILY | 66 | 122 | 57 | 1.96E-17 | ||
| Gene3D | 66 | 123 | 58 | 1.6E-19 | ||
| Pfam | 66 | 114 | 49 | 4.4E-9 | ||
| CDD | 66 | 121 | 56 | 8.72443E-26 | ||
| SMART | 67 | 128 | 62 | 8.7E-30 | ||
| ProSiteProfiles | 67 | 122 | 56 | 20.257 | ||
| Gene3D | 192 | 325 | 134 | 8.1E-46 | ||
| SUPERFAMILY | 199 | 308 | 110 | 6.67E-30 | ||
| CDD | 200 | 301 | 102 | 6.81588E-29 | ||
| SMART | 202 | 318 | 117 | 6.1E-23 | ||
| ProSiteProfiles | 202 | 318 | 117 | 13.211 | ||
| Pfam | 202 | 310 | 109 | 4.4E-27 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi2g1v0281100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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