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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0285100 |
| Transcript ID | LotjaGi2g1v0285100.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Basic helix-loop-helix transcription factor; TAIR: AT3G24140.2 basic helix-loop-helix (bHLH) DNA-binding superfamily protein; Swiss-Prot: sp|Q56YJ8|FAMA_ARATH Transcription factor FAMA; TrEMBL-Plants: tr|A0A1J7HIN3|A0A1J7HIN3_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0285100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:75807843..75811108) extracted from Lotus japonicus Gifu genome v1.2.
TCTCTCTCTCTCTCTCTCTTCTCTCTCTAGATCTCTCTCTCTCTGTCATTTTGTGTGACCACCAACAAAGTCAAATCCCA ACCCCAGCGCTCCCCACATATTATATATATCGGATCACAAAAAAACTTGAATAATAAAAACACCACTGTCCTCTTCTGGC GGTCTACTATTGTAGGGTACACTGCCTTTCATGGTTCTGTTCTAACTCTACTACACAAGTCCCAACTTCACTTTCACCCT TGTCTCCTTCCCTCACTCCACAACACAGGTTTGATTTCTAACTCTTTCATTTACTTATTATTGCATGTACATATATATGA TTAATCTCTTATGATGAGTTCATATAGATTCAAGCCATATGAGCTGCAATTAAAAACTGCCGCTAACACATATGTCAATT TTTATGTCACTTGAATCAGTATGTCCGATAATCATTTACATTCTCTTGTATATACATAAGATATAAGGACTAATTTTATG ATTTTTTTCTCACACTCAGTGATTTAATTTAATTAACATGATGTTTGATGTTTAACTAGCTAGTAGATTTACAAATACTA CTAGTTCAGGTGGAGGGCCCTCAAGTGAAAGGTTTTGTCTTACACCAAGGGAGGGTGTGGTAGGATTTGTTTCCATTAAA GTCAACTTCTTTATAAGATAACAATAATGGAGAAAGATCACAACTATTCGGTACAACACACACCTCTCTCTTTTTATATT TTTGGCTCCACTCAAAATTTACATGTTAGATCTTTTCATCACCATGTTGATTTGCTCCAACTTTGAATCACTGCAGGCAC CACCCATGCCTCCAAGTTTCAACCCACTTCATGACTACTCATCTCATCAACATCATCATAACAATCTGTATCCACAAATG AAGTTTCGAATCGGCGAAACTTCAGGTGAAAACAACAGCAACAACAGTGGGATGGTCATGGACTACATGCCACAAACACA ACCACCGCCACAAATAACATCATCCCCAGGAGGGTTTTATGGAGGAGCTGGTGGTTTCGACAAGCTGAGTTTCGCTGATG TGGTGCAGTTTGCAGATTTTGGACCCAAATTGGCCTTGAACCACCAAGGCAAGGATAACTGCGAAGAATCCGGTATCGAC CCGGTTTATTTTCTCAAGTTCCCTGTCTTGAACGACAAGATGGAGGACCAAAACTTGATGGTGAATCCAAATGGTGAAGG AGAAGAAGCTGAAAATGATGATGAGAGGTTCAATAACTTGGTGAGCGTGGACGACACGTCGAGGGCAGAAGAAGAGGGAA TCATCATCAGAGAAGATGAAGAAGAAACCACTCCTGATGACAACAACTCGGTGCAGCAGCATCAGCATCAGAATCAGTTT GTTGGTCATGAAGATCAGCAGGTTCAGAAGAGTAATGTGCAGGAAAACAAGAACAAGAGGAAGAGACCGAGAAGCGTTAA GACAACTGAGGAAGTTGAGAGCCAGCGCATGACCCACATCGCTGTTGAGAGGAACCGGAGGAAGCAAATGAATGAGCATC TTCGTGTCCTTAGATCCCTCATGCCTGGTTCATACGTCCAAAGGGTATGTCAATATGTCCCTATGAGCATATTTCGAAAT CCTTCTAAAGTTAATTCTAAAAACAGAATCAATTATGTGGAAAAACGTCCGCGTGACAAAATTGATTCTGAGAATAAATA AATAATATATACATAGCAATGAAAAAAGGGGTTTGAATTGCTCTCACAATTTCGGTGCAGTTTCATTCAGTTACATGAAT TACAATCCTTAAAAATGGAGAAGTACAGTTGATATACAATTCAAAACACTGAAAAAGAAATTAACATGTAGAAGCTATTG CACTACCCTATTTTTTTTATTGGACTTGAGATTTAAATTTTGCTCTCCATCTAGTATATTGTTCATGTTTGGATTAACTT TTTTTTTAATAATCATTTATGAAACTCATAAGCTAATGTTAAAGTTTCTTCTCAAAATTAATTGTCTCTAGCTAGATTCA GGATTTACAAACATACAATATAAGATAAGTATTCTGAAAAACCGCAAAAAATTATAAATAAGGATGATTGAAGCCAAATG GGTTTGTGGACCCACTAGTACATATGTTACTCTACTTTAACTCTACAAATTTTGTTACACCCTCTTGATTTTTTGTTTCT CTTTTTAATTTTTTTTTATGTATCTATAAAGGGTGATCAAGCTTCTATAATAGGGGGAGCTATAGAGTTTGTGAGGGAAT TGGAACAACTTCTTCAATGTTTGGAATCACAGAAGAGGAGGAGACTTCTCGGAGAAGCACAATCAAGACAGGTAGAAAAT TCAGCTGCTCTGGCAGCTGCACCAGCAACACAGCAACAGCCTCCATTCTTTTCTCCACCTTTGCCAGTAAATGACCAGAT GAAGCAGCTTGTGGAGATGGAGAGTGGTGGAGGACTTCGAGAAGAAACCGCAGAGAGCAAGTCTCTTTTGGCAGATGTAG AAGTGAAGCTTCTCGGATTCGACGCGATGATCAAAATCTTATCAAGAAGAAGGCCTGGACAGTTGATCAAGATCATTGCT GCACTTGAAGATCTTCAGCTCATTATCCTTCACACCAACATCACCACCATTGAACAAACAGTTCTTTATTCTTTCAATGT CAAGGCACGTACACTAAGTGCATGTTTGGAAAAAAAAATTAAAATTGAATTTAAAGTCAAAATCAATTCTTAGAAGTATG TGACAGTAATTACATAGTAGTTTTCTGAGTGTTAAAATTGATTCTGAAGAAAAATAAGTTGATACAAACATGCTTGTCTG GAAGCCACTTTGATTAGTCTTCAAGCAAAAACATAAATTAAATAAAGTTTGATGTTTCTGCAGGTGGCTGGTGATTCAAG GTTCACTGCTGAAGACATAGCCAGCTCCGTTCAGCAAATAGTGAGTTTTATCCATGCAAACACAAGCATGTGATCATTAT TATATGTAGTTATTACTATGTAGTGGTGGTGGCACCTATACTTGTCTTTATGCATGGGATGCTGATGCTGATTTTACAGT GCCACTTTTAGAATTTCCTTTTGTGCGCATTGAAGCAAGTGGTGATTGGACATGATGGCGGTTTAAGTTGCAGATGGTTG TCTTCTCTTCTAAAAGTAGCATATTACCAGAAAGGAGAAGAATTGGAAAGGTTGCATGTATTTACATAGTTATTTAGTAA TCGGTTTATGTTATTGTTTCCCCTTTTTTGTTCCTCCTACCATGTATACCTTAATGTTTAATGGAA
CDS sequence (LotjaGi2g1v0285100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTAGATCTTTTCATCACCATGTTGATTTGCTCCAACTTTGAATCACTGCAGGCACCACCCATGCCTCCAAGTTTCAA CCCACTTCATGACTACTCATCTCATCAACATCATCATAACAATCTGTATCCACAAATGAAGTTTCGAATCGGCGAAACTT CAGGTGAAAACAACAGCAACAACAGTGGGATGGTCATGGACTACATGCCACAAACACAACCACCGCCACAAATAACATCA TCCCCAGGAGGGTTTTATGGAGGAGCTGGTGGTTTCGACAAGCTGAGTTTCGCTGATGTGGTGCAGTTTGCAGATTTTGG ACCCAAATTGGCCTTGAACCACCAAGGCAAGGATAACTGCGAAGAATCCGGTATCGACCCGGTTTATTTTCTCAAGTTCC CTGTCTTGAACGACAAGATGGAGGACCAAAACTTGATGGTGAATCCAAATGGTGAAGGAGAAGAAGCTGAAAATGATGAT GAGAGGTTCAATAACTTGGTGAGCGTGGACGACACGTCGAGGGCAGAAGAAGAGGGAATCATCATCAGAGAAGATGAAGA AGAAACCACTCCTGATGACAACAACTCGGTGCAGCAGCATCAGCATCAGAATCAGTTTGTTGGTCATGAAGATCAGCAGG TTCAGAAGAGTAATGTGCAGGAAAACAAGAACAAGAGGAAGAGACCGAGAAGCGTTAAGACAACTGAGGAAGTTGAGAGC CAGCGCATGACCCACATCGCTGTTGAGAGGAACCGGAGGAAGCAAATGAATGAGCATCTTCGTGTCCTTAGATCCCTCAT GCCTGGTTCATACGTCCAAAGGGGTGATCAAGCTTCTATAATAGGGGGAGCTATAGAGTTTGTGAGGGAATTGGAACAAC TTCTTCAATGTTTGGAATCACAGAAGAGGAGGAGACTTCTCGGAGAAGCACAATCAAGACAGGTAGAAAATTCAGCTGCT CTGGCAGCTGCACCAGCAACACAGCAACAGCCTCCATTCTTTTCTCCACCTTTGCCAGTAAATGACCAGATGAAGCAGCT TGTGGAGATGGAGAGTGGTGGAGGACTTCGAGAAGAAACCGCAGAGAGCAAGTCTCTTTTGGCAGATGTAGAAGTGAAGC TTCTCGGATTCGACGCGATGATCAAAATCTTATCAAGAAGAAGGCCTGGACAGTTGATCAAGATCATTGCTGCACTTGAA GATCTTCAGCTCATTATCCTTCACACCAACATCACCACCATTGAACAAACAGTTCTTTATTCTTTCAATGTCAAGGTGGC TGGTGATTCAAGGTTCACTGCTGAAGACATAGCCAGCTCCGTTCAGCAAATAGTGAGTTTTATCCATGCAAACACAAGCA TGTGA
Protein sequence (LotjaGi2g1v0285100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLDLFITMLICSNFESLQAPPMPPSFNPLHDYSSHQHHHNNLYPQMKFRIGETSGENNSNNSGMVMDYMPQTQPPPQITS SPGGFYGGAGGFDKLSFADVVQFADFGPKLALNHQGKDNCEESGIDPVYFLKFPVLNDKMEDQNLMVNPNGEGEEAENDD ERFNNLVSVDDTSRAEEEGIIIREDEEETTPDDNNSVQQHQHQNQFVGHEDQQVQKSNVQENKNKRKRPRSVKTTEEVES QRMTHIAVERNRRKQMNEHLRVLRSLMPGSYVQRGDQASIIGGAIEFVRELEQLLQCLESQKRRRLLGEAQSRQVENSAA LAAAPATQQQPPFFSPPLPVNDQMKQLVEMESGGGLREETAESKSLLADVEVKLLGFDAMIKILSRRRPGQLIKIIAALE DLQLIILHTNITTIEQTVLYSFNVKVAGDSRFTAEDIASSVQQIVSFIHANTSM
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 3 | 3 | - | – | |
| Phobius | 1 | 16 | 16 | - | – | |
| Phobius | 4 | 11 | 8 | - | – | |
| Phobius | 12 | 16 | 5 | - | – | |
| Phobius | 17 | 454 | 438 | - | – | |
| PANTHER | 59 | 454 | 396 | 1.1E-161 | – | |
| PANTHER | 59 | 454 | 396 | 1.1E-161 | – | |
| MobiDBLite | 144 | 243 | 100 | - | – | |
| MobiDBLite | 160 | 180 | 21 | - | – | |
| MobiDBLite | 194 | 219 | 26 | - | – | |
| MobiDBLite | 220 | 243 | 24 | - | – | |
| Gene3D | 230 | 320 | 91 | 2.3E-11 | ||
| CDD | 239 | 296 | 58 | 5.76882E-13 | ||
| ProSiteProfiles | 240 | 291 | 52 | 15.428 | ||
| SUPERFAMILY | 240 | 307 | 68 | 3.14E-16 | ||
| Pfam | 241 | 292 | 52 | 5.5E-10 | ||
| SMART | 246 | 297 | 52 | 3.4E-9 | ||
| CDD | 380 | 444 | 65 | 7.45913E-4 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein dimerization activity | The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. |
Expression pattern of LotjaGi2g1v0285100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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