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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0287400 |
| Transcript ID | LotjaGi2g1v0287400.3 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 60 kDa chaperonin; TAIR: AT1G26230.1 TCP-1/cpn60 chaperonin family protein; Swiss-Prot: sp|Q9C667|CPNB4_ARATH Chaperonin 60 subunit beta 4, chloroplastic; TrEMBL-Plants: tr|A0A151R5F8|A0A151R5F8_CAJCA Uncharacterized protein; Found in the gene: LotjaGi2g1v0287400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:76043666..76047322) extracted from Lotus japonicus Gifu genome v1.2.
TTTTGGTATTGGTGCAGGCAGGGGTGGACATGGTGGCAGAGCTTCTTGGTGTCACATTGGGTCCCAAGGGGAGAAATGTT GTGCTGCCAAACAAGTATGGGCCACCCAAGATTGTAAATGATGGAGAAACTGTTCTCAAAGAGGTGTTTTTTTTAACTCA TTTTTATTATCAATCAAATGCTTCTTCTCTGGTGTTCTCTTTTTTGTAATAATGTTATTAGTTCTGAGAATTTTCAGATT GAATTGGAAGATCCTCTTGAGAATCTTGGAGTAAAATTGGTGAGACAAGCTGGTGCAAAAACCAATAACCTAGCTGGTGA TGGTTCAACTACATCTGTTATTCTTGCCCATGGCTTAATCACAGAGGGGACAAAGGTGCATGTGAACCCCAACTAATTCA GCCAAAATGTAATGATTTCAAATGTAAACTATTCTGAAAAGCCCCAAATGCTTAGATTTCAAATTGCAAATAAACATTGG AAAATATTACCTTTGAGTTTAGGTTTTAGACACCGTGCCAATGACTTTAAAAAGGGTGTTGTTAAATTTTGAGCTCTTAG CATGCTCTTTTCTTTTCCCTTTGTAGGTTATTGCAGCTGGAATGAATCCTGTTCAAATTGCTCGTGGGATTGAGAAGACG GCAAAAGCACTTGTTTCTGAACTCATGTTGATGTCTAGAGAAGTAAGCTTTACTCTCTCTAGGGATGATTGAAAATTTTG AGAATCATAGATTCATAATCAAAACTATTTGGCTGCAGATCTTAACTTAATTATTGATTTTGGTGCCTGCCAATTTTTGC TTGTAGCTGAATTCAGCGAAACTGGTTGCATTTATAGGTTGAGGACCATGAGCTTAGAGATGTTGCAGCAGTCAGTGCTG GGAATGATTATGCAGTAGGAAACATGATTTCTGAGGCTCTTCATCAAGTAGGCAGGAGGGGAGTAGTTACAATAGAAAAA GGAAAGAGCACTGAGAATACTCTGGAGATTGTAGAAGGAATGCAATTTGATCGCGGATATCTGTCCCCACACTTTGTCAC GGATAAAGGAAAGATGACAGTGGAATTTCAAAACTGCAAGGTATAACAATTAGCATGTAAGCATCTCATGTAAGTTCTAT AAAGTAATTAGATGGTGCTTAAATCTTTGGTTGCAGCTGCTTTTGGTGGACAAGAAAATCACAAACGCGAAGGAGCTGCT TAATATATTGAAAATTTCCTGGAGAGAGAAGTATCCACTTGTGATAGTTTCAGAGGGCATTGAGGAGGAAGCTCTGGCTC CAGTTCTTAAAAATAAGCTCAACGGCTCGCTTAAGGTAGCAGCCATTAAGGCTCCTGCGTTCGGTGAACGCAAGACCCAC TACTTAGAAGACATTGCCATCTTGACTGGAGGTAGAAGATCAAGTACACAGTTTTAGTAGCTTAAATATTCATTCTGTTT GCTGATATATTTTTGACAACTAGAAGAAATGTTCTATCAGGAGTAACTGGTTGCAGTTGCTTAAATGACACAGACCAACT TATTAAAGACAAATAAATGAAAGACTTACTCATTTTCATTAATATGATAAAGTACTGAAAGCATTACTAGTTTCTAATAT GGTCTTCAAGTTTTAACCCGTTCTCTATTAATCTTTCATATGTTTTTCAGGTACTGTAATCAGAGAAGACATGGGTTTCA CCCTGGCAAAGGCTAGCACAGGTATGCTGGGTTCTGCTACAAAGATTGTCATCACACAGAATTCGACCCTAATAGTCACT GATGGGAGTACTCGAGTAGCTGTTGAGAAGAGGGTTTATCAACTTAGGAGGCTTGTTGAGGTTCATAAAGCACTCTGCTA GTACAGTGTTTAAGTTGTAAAAGTAACATATTGATATTGCATGGTTAACATCTCCTGGGATTACCTACACCTCTATTTTA TATTTTGCAGAATACTGTAGAAAATTTCCAAAAGAAGATATTGAATGAAAGGATAGCAAGATTATCAGGGGGCATTGCCA TTCTTCAGGTAATAAGAATTTCATTTTATTTTGTCTCATGATAATCTAAGATTTAAGAATTATGTTTCTATTGCAATTCA GCACCTGTAATTTAATCATAGGTAGGAGCACTAACAGAAGTTGAGTTGAAGGATAAGCAATTAAGAATAGAAGATGCATT GAATGCAACCAAGGTATTTATTTTTTCTTGGCTTCAACATGTGATTTGCTATCAATAATTGCTAAGCTTCTAACTTAGAA CATTTCAGGCAGCAATTGAGGAAGGTGTAGTAGTTGGTGGTGGCTGCAGCCTTTTAAGGCTATCCAAGAAGATGGATAGC ATAAAAGAACTCCTGGACAATGAAGAGCAAAAAGTAATCATCTGTTTCATAAAACTTAAGTTTTCCACCATCATGTTCAA ACTTTACACTATAATGAGGCCTTTGTTCTAACAGTATGTTTTAAGTATTCATTTTATGTTGTGCCTTTTTGTTGATTGTT TAACATATGGAAATCTGTTATCCTTATTTAGATTGGAGCTGAAATCTTCAAAAGAGCTTTGAGCTATCCTACTAGAAAGA TAGCGAAAAATGCTGGTGTGAATGGCAATGTCGTCATAGATAAGGTCCTCAGGATGTTGAGAAACTATTTTCTGTAAGAG AATGATTACCAATAAGAATTTTGGATCTTCTCTAGTTTGTTTAGTTAACTCAGCTCAACAACATACATTGAATTAAAATG CATGCTTGAGGTTTTTCATGTCTTGCAGGTTTTATCAGACGATAACATGAATTTTGGTTACAATGCTGCGAGCGACTGTT ATGAGGATCTCATGAAAGCTGGGATCATGGATCCAGCAAAGGTATGACTATTTGATAATGTTACAGTTGAGTTTCAAACT AGCGCACATGATGGTAGATTTTATTATCTTGAATTTTTTTTGCAGGTAGTTAGGTGTTGTATAGAGCATTCGGCTTCTGT GGCGAAGGCATTTCTAACATCTAATGCTGCTGTGATTGACCTCGTGCAATTTGAGCCCATACCAAGGGGAAAGCCCATGG CTACCTCAGGTACTGAAACCTTGCATTGTCAAAAGGTTATTCAGTTCATTATGTTAAGCTGCTTTCCTATAAATTCCTTA GCCTTTTATGGGTGACATTGTTGATGTTTGATAATTCAGGTTTAGGAGGACCAATTGGGTCTGAATAAAGAAAGTTGTGT GCAGTTCAGTTCAGCTTTTTGGATCTAGCTTTTATTGACCACCCAAGTATTCAAGAAAACAAATCAAGATGACCACCCAA GTATTCAAGAAAACAAATCAAGAAGCTTGTACAAATGCTTGTACAGATAATGGAATTGATCGATCCCAGGGCCCCCAAAT GAAGTTAGACACATTAAATTGACTCTGACTAGCTTGGAGAACTCCTTCAATGGGAAGTACACAACATGTATACAGAAGGA AAAGCTTGTGGCATTCAGTAGTTACCATGTCCAATTCTAATGGTGGATGTTAGAAAAAGTTCTTTAATTATTGGATGGAG TATAAGAATTTTCAGGCATAGTGTGAACTGTGAAGCAATTTAAATGCAGTATGCTTCTGAAAGATAATTACATAGTTACT TGTTAATCAATCACATCCGCTTATAAATCAAATACATTTGCAGCTAAGCGCCTAAGC
CDS sequence (LotjaGi2g1v0287400.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAATCCTGTTCAAATTGCTCGTGGGATTGAGAAGACGGCAAAAGCACTTGTTTCTGAACTCATGTTGATGTCTAGAGA AGTTGAGGACCATGAGCTTAGAGATGTTGCAGCAGTCAGTGCTGGGAATGATTATGCAGTAGGAAACATGATTTCTGAGG CTCTTCATCAAGTAGGCAGGAGGGGAGTAGTTACAATAGAAAAAGGAAAGAGCACTGAGAATACTCTGGAGATTGTAGAA GGAATGCAATTTGATCGCGGATATCTGTCCCCACACTTTGTCACGGATAAAGGAAAGATGACAGTGGAATTTCAAAACTG CAAGCTGCTTTTGGTGGACAAGAAAATCACAAACGCGAAGGAGCTGCTTAATATATTGAAAATTTCCTGGAGAGAGAAGT ATCCACTTGTGATAGTTTCAGAGGGCATTGAGGAGGAAGCTCTGGCTCCAGTTCTTAAAAATAAGCTCAACGGCTCGCTT AAGGTAGCAGCCATTAAGGCTCCTGCGTTCGGTGAACGCAAGACCCACTACTTAGAAGACATTGCCATCTTGACTGGAGG TACTGTAATCAGAGAAGACATGGGTTTCACCCTGGCAAAGGCTAGCACAGGTATGCTGGGTTCTGCTACAAAGATTGTCA TCACACAGAATTCGACCCTAATAGTCACTGATGGGAGTACTCGAGTAGCTGTTGAGAAGAGGGTTTATCAACTTAGGAGG CTTGTTGAGAATACTGTAGAAAATTTCCAAAAGAAGATATTGAATGAAAGGATAGCAAGATTATCAGGGGGCATTGCCAT TCTTCAGGTAGGAGCACTAACAGAAGTTGAGTTGAAGGATAAGCAATTAAGAATAGAAGATGCATTGAATGCAACCAAGG CAGCAATTGAGGAAGGTGTAGTAGTTGGTGGTGGCTGCAGCCTTTTAAGGCTATCCAAGAAGATGGATAGCATAAAAGAA CTCCTGGACAATGAAGAGCAAAAAATTGGAGCTGAAATCTTCAAAAGAGCTTTGAGCTATCCTACTAGAAAGATAGCGAA AAATGCTGGTGTGAATGGCAATGTCGTCATAGATAAGGTTTTATCAGACGATAACATGAATTTTGGTTACAATGCTGCGA GCGACTGTTATGAGGATCTCATGAAAGCTGGGATCATGGATCCAGCAAAGGTAGTTAGGTGTTGTATAGAGCATTCGGCT TCTGTGGCGAAGGCATTTCTAACATCTAATGCTGCTGTGATTGACCTCGTGCAATTTGAGCCCATACCAAGGGGAAAGCC CATGGCTACCTCAGGTTTAGGAGGACCAATTGGGTCTGAATAA
Protein sequence (LotjaGi2g1v0287400.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNPVQIARGIEKTAKALVSELMLMSREVEDHELRDVAAVSAGNDYAVGNMISEALHQVGRRGVVTIEKGKSTENTLEIVE GMQFDRGYLSPHFVTDKGKMTVEFQNCKLLLVDKKITNAKELLNILKISWREKYPLVIVSEGIEEEALAPVLKNKLNGSL KVAAIKAPAFGERKTHYLEDIAILTGGTVIREDMGFTLAKASTGMLGSATKIVITQNSTLIVTDGSTRVAVEKRVYQLRR LVENTVENFQKKILNERIARLSGGIAILQVGALTEVELKDKQLRIEDALNATKAAIEEGVVVGGGCSLLRLSKKMDSIKE LLDNEEQKIGAEIFKRALSYPTRKIAKNAGVNGNVVIDKVLSDDNMNFGYNAASDCYEDLMKAGIMDPAKVVRCCIEHSA SVAKAFLTSNAAVIDLVQFEPIPRGKPMATSGLGGPIGSE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 424 | 424 | 5.2E-237 | – | |
| Gene3D | 1 | 409 | 409 | 1.0E-147 | ||
| SUPERFAMILY | 1 | 412 | 412 | 1.14E-28 | ||
| Pfam | 1 | 413 | 413 | 1.6E-65 | ||
| PANTHER | 1 | 424 | 424 | 5.2E-237 | – | |
| Gene3D | 27 | 299 | 273 | 1.0E-147 | ||
| SUPERFAMILY | 31 | 86 | 56 | 6.1E-10 | ||
| SUPERFAMILY | 73 | 265 | 193 | 3.92E-64 | ||
| Gene3D | 80 | 264 | 185 | 1.0E-147 | ||
| PRINTS | 267 | 289 | 23 | 3.3E-10 | ||
| ProSitePatterns | 294 | 305 | 12 | - | ||
| PRINTS | 300 | 312 | 13 | 3.3E-10 | ||
| Coils | 308 | 328 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Biological process | Protein folding | The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure. |
Expression pattern of LotjaGi2g1v0287400.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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