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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0287600 |
| Transcript ID | LotjaGi2g1v0287600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Zinc transporter; TAIR: AT1G31260.1 zinc transporter 10 precursor; Swiss-Prot: sp|Q6L8G1|IRT2_ORYSJ Fe(2+) transport protein 2; TrEMBL-Plants: tr|A0A1J7GP64|A0A1J7GP64_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0287600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:76088820..76090504) extracted from Lotus japonicus Gifu genome v1.2.
GGCGAGTAATAACTCCTCCAAACTCGCAGCGGTTGTTATCATCTCGGCGTTGCTATTAGCGGCGTTGCCGGTGCCGGCGA GGGGAGAACAAGAATGCTCCTCCAAGCACGAAGGAAAGTGCCATGACAAGAACAAGGCATTGAAGCTGAAAATCATCGCC ATCTTCTGCATTCTGGTAACCAGCATGCTAGGCATCTGCCTCCCAATCTTCTCCGGCGCCGTCCCCGCCTTGAATCCAAA CGGCGACCTCTTCGCCATCGTAAAAGCCTTCGCCTCCGGCGTCATACTCGCCACCGGTTACATGCATGTTTTGCCTGACT CGTTTGACGACCTCACCTCGCCGTGCTTGCCGGAACGCCCCTGGCACAAGTTCCCCTTCACCACGTTTGTTGCTATGCTC TCCGCTGTTTTTACTCTCATGGTTGATTCCTTCTCCATCAGCTTCTTCAAGAAGAAGCTTTCTGCCGTGTCGTCGGAAGG TGGTGATCCTCGTGAGCCCAAGGAATTGGAAAACGTTGGCGGTTATGATCATCATCATGCACATGGAATGCTTGTGACGA CGGGTGTAAATGCAGAACAGTTGCTCCGCCACCGGGTTGTGGCTCAGGTTAACTACTACTCCCTCCATTTTAAGCATTTT CTACTATCTATACATTTATTTAATATTATATCTCTCGCATTGTATTTGTATCTATCGCAATTGTCATGAATTAAACTTAA ATGTCAAACAACCAGTTATCCGTCCCCGAATGGTAAGAGCTAAGAGACATATGAGTTGGAGTGAGGAGGTCTAGATCAAT TTCTGGATGGCGCAATTTATCTTTTCGATGTAAAAAAAATCAGTTATCTCACCCTTCACGCAAGAGCCCATTGGTCTTAA AGTGGGGATAATGCACAAAATTAGCTAGGTGCTTAAATTCTACTTTTTTTTTAATTTGAAAGTGAGGGAGAAGGATCGAA CTCTACACCGCTAAGTCATAGAGACTCTGATATATGATGTGAAATAATTAATGATAATTAGTTGAAATTTGTTATAAACT TATTGTAATTGCGATGTTCTGTGCAGGTGTTGGAGCTAGGCATTGTGGTGCACTCAGTGGTGATTGGTTTGTCAATGGGA GCTTCTGAGAATCCATGCACAATTAGGCCTCTGATGGCAGCACTTTGCTTCCATCAACTCTTTGAGGGAATGGGATTGGG TGGTTGTATACTTCAGGCTGAGTATGGATTCAAGGTGAAAGCGATTATGATATTCTTCTTCTCCGTGACGACGCCATTTG GGATTGTGTTGGGGATTGGTTTGTCGAAGGTGTACAGCGATACTAGTCCGACTTCTCTGATCGTGGAGGGGATTCTGAAC GCGGTGTCCGCGGGGCTTCTGAATTATATGGCGCTGGTGGATTTGCTGGCTGCAGATTTCATGGGGCCTAAGTTGCAGAG CAGAGTGAGGCTTCAGTTGTGGGCGTTCGTGGCGGTTTTACTTGGGGCAGGGGGCATGTCTGTGATGGCAATTTGGGCAT AGATGTTGATGATTTCGTGGAACCCTTTCGTGAATTACCATGACATTTGTTTGTTGGTTGCATGTTGCAACTCAATTTTG GCATGAAATAGTAATGCAAGAATTCAACAAAATCATTTAGCAGTTATTACTTTCTGTTATTAGCTTAGTTAATAGTTAGT TAATT
CDS sequence (LotjaGi2g1v0287600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTAGGCATCTGCCTCCCAATCTTCTCCGGCGCCGTCCCCGCCTTGAATCCAAACGGCGACCTCTTCGCCATCGTAAA AGCCTTCGCCTCCGGCGTCATACTCGCCACCGGTTACATGCATGTTTTGCCTGACTCGTTTGACGACCTCACCTCGCCGT GCTTGCCGGAACGCCCCTGGCACAAGTTCCCCTTCACCACGTTTGTTGCTATGCTCTCCGCTGTTTTTACTCTCATGGTT GATTCCTTCTCCATCAGCTTCTTCAAGAAGAAGCTTTCTGCCGTGTCGTCGGAAGGTGGTGATCCTCGTGAGCCCAAGGA ATTGGAAAACGTTGGCGGTTATGATCATCATCATGCACATGGAATGCTTGTGACGACGGGTGTAAATGCAGAACAGTTGC TCCGCCACCGGGTTGTGGCTCAGGTGTTGGAGCTAGGCATTGTGGTGCACTCAGTGGTGATTGGTTTGTCAATGGGAGCT TCTGAGAATCCATGCACAATTAGGCCTCTGATGGCAGCACTTTGCTTCCATCAACTCTTTGAGGGAATGGGATTGGGTGG TTGTATACTTCAGGCTGAGTATGGATTCAAGGTGAAAGCGATTATGATATTCTTCTTCTCCGTGACGACGCCATTTGGGA TTGTGTTGGGGATTGGTTTGTCGAAGGTGTACAGCGATACTAGTCCGACTTCTCTGATCGTGGAGGGGATTCTGAACGCG GTGTCCGCGGGGCTTCTGAATTATATGGCGCTGGTGGATTTGCTGGCTGCAGATTTCATGGGGCCTAAGTTGCAGAGCAG AGTGAGGCTTCAGTTGTGGGCGTTCGTGGCGGTTTTACTTGGGGCAGGGGGCATGTCTGTGATGGCAATTTGGGCATAG
Protein sequence (LotjaGi2g1v0287600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLGICLPIFSGAVPALNPNGDLFAIVKAFASGVILATGYMHVLPDSFDDLTSPCLPERPWHKFPFTTFVAMLSAVFTLMV DSFSISFFKKKLSAVSSEGGDPREPKELENVGGYDHHHAHGMLVTTGVNAEQLLRHRVVAQVLELGIVVHSVVIGLSMGA SENPCTIRPLMAALCFHQLFEGMGLGGCILQAEYGFKVKAIMIFFFSVTTPFGIVLGIGLSKVYSDTSPTSLIVEGILNA VSAGLLNYMALVDLLAADFMGPKLQSRVRLQLWAFVAVLLGAGGMSVMAIWA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| TIGRFAM | 1 | 292 | 292 | 2.5E-122 | ||
| Phobius | 1 | 21 | 21 | - | – | |
| PANTHER | 1 | 292 | 292 | 9.1E-160 | – | |
| PANTHER | 1 | 292 | 292 | 9.1E-160 | – | |
| Pfam | 2 | 289 | 288 | 1.6E-62 | ||
| TMHMM | 21 | 43 | 23 | - | – | |
| Phobius | 22 | 43 | 22 | - | – | |
| Phobius | 44 | 62 | 19 | - | – | |
| TMHMM | 63 | 85 | 23 | - | – | |
| Phobius | 63 | 88 | 26 | - | – | |
| Phobius | 89 | 137 | 49 | - | – | |
| Phobius | 138 | 158 | 21 | - | – | |
| Phobius | 159 | 169 | 11 | - | – | |
| Phobius | 170 | 190 | 21 | - | – | |
| Phobius | 191 | 201 | 11 | - | – | |
| TMHMM | 201 | 220 | 20 | - | – | |
| Phobius | 202 | 224 | 23 | - | – | |
| Phobius | 225 | 235 | 11 | - | – | |
| TMHMM | 230 | 252 | 23 | - | – | |
| Phobius | 236 | 260 | 25 | - | – | |
| Phobius | 261 | 271 | 11 | - | – | |
| TMHMM | 272 | 291 | 20 | - | – | |
| Phobius | 272 | 291 | 20 | - | – | |
| Phobius | 292 | 292 | 1 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Zinc ion transmembrane transporter activity | Enables the transfer of zinc (Zn) ions from one side of a membrane to the other. | ||
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Biological process | Metal ion transport | The directed movement of metal ions, any metal ion with an electric charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. | ||
| Molecular function | Metal ion transmembrane transporter activity | Enables the transfer of metal ions from one side of a membrane to the other. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. | ||
| Biological process | Zinc ion transmembrane transport | A process in which a zinc II ion is transported from one side of a membrane to the other by means of some agent such as a transporter or pore. |
Expression pattern of LotjaGi2g1v0287600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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