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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0291800 |
| Transcript ID | LotjaGi2g1v0291800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Squamosa promoter-binding-like protein; TAIR: AT1G69170.1 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein; Swiss-Prot: sp|Q94JW8|SPL6_ARATH Squamosa promoter-binding-like protein 6; TrEMBL-Plants: tr|K7K7W5|K7K7W5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0291800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:76589904..76595501) extracted from Lotus japonicus Gifu genome v1.2.
AGTAGAGGAAATCATGCTGACTCATGCTGTCTCTGCCTCAACAACGTTACCACAGTTCTGAGGAAAACCTCTCTCTCTCT CTCTCTCTCTTTCACTCACTGTTCACTCTGCTGTGTGCCAAAACCAAAACCACTCACAAGGTGCCACCACTTGTCAGGTT CCTTCAAGGTACCACCTCTTTTACTGCATGGATCCTGTTTGGTTCCCCGAGAAACCGTGTTGGTTGAAAGATAGAATCAT GAACCAGGTAGATGGACAATTCATTTCATTTTCCTCAATCTGTCAACTACTGTCCAGTTTTGCATTTTTCTAGCGGTTTG TTTCGTTTTCCCTTTGAAGAAAAATGAGTCCTTTCAACTGATTCTTATCTGGGCATGCTCATTTCATGCCTTTCTTCTGC AGCTCTGCAGTTTGAGCTTCCACTGTTTTTGTTTTGTCAATTGGGGTTTCAATGTGATTAGAGTTTTGGGTTGGATTTTG TTCAATCTTTTGAAATTTGTCTTTTTGATTACTTGGTTTACCTGATTGTCAAACTCTCAATGTCCATGTTAAAAAAAGTT TAGATTTTTGGATGCTATTTCTGGCTAGCAGTTGTGGATTATGATTTTTCTGACTATAATACTAAGAGGGATCTGATTGT ATTTTCTTTTCTTTTCCTCTTATTTTGGTAGAAACATTTATTCTCACATTAGTATTGGGGAATTTGTCATGTTGTTCACT GGTTTCTTTTATCTTGTTTCCCTAGAGTTTATTATGTACATGTACTTTATTTGGCTATAGCTATAGGTTTGTGTTTTATA GTGTGAAGATGCCTGAATTTGGTGTGATAAAATGAATATATATCTATATAAAGCTTTTGATTTTAGCAAAGGAGTAATCT ATTTCTTTCCAATTGTGATAGGCATAGGCTTCTTTATTACTTACTAGCTTCCGAGGCTTCAATTAAGTGGTACTAATGGA ATCTTGGAGTAATGTCCCTGAAGAGAAAGGCTATTTGTTCCCTGATGAAGTGGATTTTTCCCTTGATGCTTTTATGAGAA GTACAAAAACATTGGTTGAATGGGACAACAAACCCTCTTGCAACTTTGAGAGAGATGGATTCAAATCAGACAGAGAGGTA GTTCAAAGCATGGAGTATGTGGACTTGGGATTTCCTCTGGAGACATCAAGCTGTGAACTAGACAGTAATTCTAGTAGAAG AGGGAATTCCTCCACCCATGTTATTGCTTTGGATTCATCCTTGGGGGATGAAGAATCTGAGTCACAGCATTTTAGTTCTC TAGTTGAATCCAAAACTCATTATTCCTCACTGATTGATCTGAAGCTAGGGAGATTAGCAGATTGTAAAGGTGCAAGCAAT GAAGATGTAGGAGAAAGGTTCACTTTAACATCTAGACACCCAACCACCGCGCTTGCAAAGAGAGCTCGGACTTCCAGCTT ACCTGCTCAGGCTCCTGTGTGTCAAGTTTTTGGTTGTAACAAGGATCTTAGCTCCTCAAAAGATTACCACAAAAGGCATA AAGTTTGTGATGTTCACTCCAAGACACCTAAAGTTATTGTCAATGGCGTTGAACAGAGGTTTTGTCAACAGTGCAGCAGG TATATTTTTGGGTTCCTTTGTGTTAAAATTTCATTGTTATACGTTTCATACAATCAGGTGGTGATCTCATGATATTAGAT AAGATCCTTAGATTAGTTAATTGCTATGGAATCTGAATCCTGTTGATGCCATAGCAATTCCAATTAAAAGTATTAGGGTC TATTTAGTTTAAAGAAATGTTTTTTGTTCCTATTGTCTGTTTCACTAATAAGTACAGAAACGATATTGTTTACTACTTTC AATTATCTCTACAGGAAATGCTGTTACTGAAATCATTAAACAAGGGTGAACATGAAGCAACACTGTTGCAGTTATGATAA ATTAGAAAATAGAAATAGATCGCACATTCTTAAACCATACAGGCCCTTAGTGCTTCTCATATTTTTTAGTTTCATATGGC TTCCCTAGTGGTTCTATGGATTTGTATTTTTATAGTGTTCTCTTTACCTACCTCAAATGTGGTGCTAGTTAATATGACAA CGACAATAGCTAATTAATCAATTTCTGATCAATCAGTGTATCTAATACAGCATAGATTAATTATATTGCATTCAGGTGAC ATATCTTCTTGGCTTTGATGTTAATGTTTACAAGTTGAATTTCATTGTTTTTATTGGATCGAATTTCACCTTTTTTATGT TGTTATTTTAGGTTTCATTTGCTGGCCGAGTTTGATGATGGTAAGCGCAGTTGTCGCAGACGTCTAGCTGGACACAATGA ACGTCGAAGGAAACCCCAGTTTGATTACATGACTGGTAACAAACACACAATTCTTCAGTCATATCAAGGTATAAAAATCC ATTCAGCTTGGACCTTCATTAACATTGATAAGACAGAATTCAAACTTCAAAAGTTTCTACTTTTAAAACTTTGCTTTCTT GTCCAATTGAAAATTTTGTTATATTGGTAATTTCTTGGTGTGTATCTTGTCATTTAGCACCTTTGGGTTTCATGGGTAAC TTGATAAGCACTTTTTTGTATTTTGACCATCCTCATATCTAACATCCTTGGCATAAATAGTTAAATACAATTTAAATGAA TATTCAGATGTGAAAGGCTAAAGGAAAAATGAAATTTTAAGATATAAGTTAGTAATAGTTTTATTAAAGAAAGACAAGGA AAACTCATTCAATAAGGTCTAGGGCTCGAGGCACTTATAATGTTTAGTAAATTATGCTCTAGTGTGAAGTGTTAGACGGT TCACAGAGGAGCATGCTTGGAAAAGAATTAGGGTAGGTAGTTCACAAAGAAAAACACATAGAGAAAACCCTGACCGTTTT TTCTTAGATTTTATTGTGGCTGATAATCAGTTGGACATTTTTTCAAAGTTTGATGTACCCATGAATAAATGATTTTGCCA TGAAGCAGTCAATACAGTAACCTGAAAAACTAGAGCTATTTCAGAAATGATATCATGATGTTTATGATGATTTCAATCTG ATGTTAATTTTCCCACACTAGGAATGAGATATAGGCAAAAGATCATATAATCTAGAACCCACTAGGTAAGCAAACATTAA AATTCATCATATGATGGAACCCGTTTTCTTAAGTTTGAGTAGCTTACTTTAAATCACATTTGATTGGATATTTGCAGTAA ATTTGAGTTGTTAATAAGGCTTAGGGGTCTAATAAACAATATTCTGAGCAAGTATAATCACTTTTAAATATAGTTAAGAA TTGATAAGTTTGGTGCATAAAATAAGTCAATATAAATTTAATTCTTAATCACCATGCATAGCTTAAAAATTGCTGGATTT CTTCATCAGGAGGCATTCATAACCATATTACTTAGGATTTTGTGGGAAGGTTAGGTACTTAGGTGTATCTGTTTATATAA CTACGTATTGGAGGACTGCCAGTAGAATTGATCTATTTCTTAATTAATTACTAAAAGAATTTTGAACACTGATGTGAATT TTTAACTTTTTAGCTGATGCAGCACGATATGACACTGATAGGCTTGTTATTTTTTAATCTTTTGCTTATATATTTCTTTT GTCTTCTATGCGCTCTTCTGCATGGTTGTTATATTTTTCTTTGAGCCCATGGTATTGTATACAGGCTGTGTAGTAGAAAT CTATTTACTTGATCCTCAAGGGCACAAGTCTACATCAGTTTTGGCCTTTTCTATAGTTGCCTCTAAACATAAACTACAGA TATCATGCATGTTTGTCACTATAGAGGAGATATGTCATGAACTTTGTCAAATAGTGCATAACTAAATTAATCATTATGCT ATAATTTGTTCTTTAGAGCATAAGGCCATTTAAAGAAAGTGAAATGTATCTTCATATAACAGTAAGATTGGCCAATACTA TAGGAAAATTGGGTCAACTCAAGCTAAGGTAGCTCCTCCACTGAAAGCTTCTTTTATATTCCTTGTCCATATTGGTTCTT AAATTATGTTATCACTTTATCTTCTCATGATCGTGGTCCCGGGGAATGACGTGGACCATTTAAAAAGTGTTTGTCTATTA GAATTTTTTATACCCAAAGTTCACGTCAAACATACCTGTGTTGATGATTGGTTCTCCTTGACAGGGTATTATTTAAAAGA TATATTCAATTCATAATCTCAAGAGAAGTTCACTGTTGGAATGTTTTCACAAGGATGAAGTTTTCTCTATAATCTGAGGT TACCTACCCAATAATTAAATTGGATGAGAAATGTAAATCCACATAAGAGTAATATATGATTACTTAAACAAAGCACAGGG GTCTTCATTACAGAACATACCCCATTTTGAAAATAATAGTGCCCAAGAAAATTATTGGAACTACTGCTGCTAGATGCCTA GATCTATGTTTTTAGGCCAGAAATTATTAGTGCCCTTTACTTGCTTTTTTCTGTTGGATGTTTGGTGTTCATACTTGTTA TTATCTTCATATTTTTCTAATATGAATCTAAACTTTCACTCAATGTGTTACCAGGCACCAAGTTTCTGGGGTCTTCATTA CAGAACATACCCCAGTTTTCCTTTCAAGACATATTTCAAAGTAGCATCCTTTTCTCAGGGAAGCAGGATCAAATCTATCA TAGTGAACATGTCAAATTGGAAGAGGAATTTTGCAGCCCTCTACTAGCAGCACCCGTCACACTTGATCAGGAGTTATCTA GCTGTGCTCTCTCTCTTCTGTCAACTCCATCGTCGCAGAATCCATCACGCCACTTAACAGGAAACCCCCTTATCTTTCAG GGAGCCTTCAAAGATGACCAAGTTTCTGCATCTCCTTTGAGGATAAACTCTGAGGAAGTCATCAAGAATGGATCCACAAC GCCTTCTTCTGATGCTGGTCGCACTCTGCAAGTCCAAAGAGATGATATTTGCCAACCATTAGAATCATTCAATAACAAAG ATTGCCTTTCCTCTGAACATGGAACTAGTGTTGATCTGTTTCAGTTGTCTTCTAATCTTCAGAGGGTGGAGCAGCAGAGA AACTCTGTTTTGGTAAAGTGGGAAATGGAGAACTATTGTTTCCCAACCGTGTAAAGGCTTCTTAGGCTTAAAGTGTCATT AACATGTCTAATTGTTTGATACCTATATTGTAATGCTATATTAGTAGAACTGTTTTATCAGTGTATTGGTTCATTTATGG CACAGAATGGGATCAATGATGAGGAATATCTTTAACTAACCATGGTAATGGAATTCAGATTGGGGGAATAGAAAGCCAAG AAAATTCAACTGTATACTAGAGATATCACTCTAACATGTTGAAAAGGAGCCATTTGGGTTAAGTTGTGCAAAACTGCAAA CAATTTAGTGTGTTTGAGTACCAGTTGAATGTCCACATGAACAAACTTTCATCACGGTAAACCGTAATAGTTTCATTCAC TTTGTCCTAAAGTGTTTGCAAATGTTCAATTGGTGTCAATGATTATCCTAATATAGTCTTAGTTGATCGGCCTCCGATAG TTATTGATTAATAGTGGAACTATGTATGGCAATACACTAAGAATTTTGTGAACTGCCTTAGACTGCATGGTAGTGAAG
CDS sequence (LotjaGi2g1v0291800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAATCTTGGAGTAATGTCCCTGAAGAGAAAGGCTATTTGTTCCCTGATGAAGTGGATTTTTCCCTTGATGCTTTTAT GAGAAGTACAAAAACATTGGTTGAATGGGACAACAAACCCTCTTGCAACTTTGAGAGAGATGGATTCAAATCAGACAGAG AGGTAGTTCAAAGCATGGAGTATGTGGACTTGGGATTTCCTCTGGAGACATCAAGCTGTGAACTAGACAGTAATTCTAGT AGAAGAGGGAATTCCTCCACCCATGTTATTGCTTTGGATTCATCCTTGGGGGATGAAGAATCTGAGTCACAGCATTTTAG TTCTCTAGTTGAATCCAAAACTCATTATTCCTCACTGATTGATCTGAAGCTAGGGAGATTAGCAGATTGTAAAGGTGCAA GCAATGAAGATGTAGGAGAAAGGTTCACTTTAACATCTAGACACCCAACCACCGCGCTTGCAAAGAGAGCTCGGACTTCC AGCTTACCTGCTCAGGCTCCTGTGTGTCAAGTTTTTGGTTGTAACAAGGATCTTAGCTCCTCAAAAGATTACCACAAAAG GCATAAAGTTTGTGATGTTCACTCCAAGACACCTAAAGTTATTGTCAATGGCGTTGAACAGAGGTTTTGTCAACAGTGCA GCAGGTTTCATTTGCTGGCCGAGTTTGATGATGGTAAGCGCAGTTGTCGCAGACGTCTAGCTGGACACAATGAACGTCGA AGGAAACCCCAGTTTGATTACATGACTGGTAACAAACACACAATTCTTCAGTCATATCAAGGCACCAAGTTTCTGGGGTC TTCATTACAGAACATACCCCAGTTTTCCTTTCAAGACATATTTCAAAGTAGCATCCTTTTCTCAGGGAAGCAGGATCAAA TCTATCATAGTGAACATGTCAAATTGGAAGAGGAATTTTGCAGCCCTCTACTAGCAGCACCCGTCACACTTGATCAGGAG TTATCTAGCTGTGCTCTCTCTCTTCTGTCAACTCCATCGTCGCAGAATCCATCACGCCACTTAACAGGAAACCCCCTTAT CTTTCAGGGAGCCTTCAAAGATGACCAAGTTTCTGCATCTCCTTTGAGGATAAACTCTGAGGAAGTCATCAAGAATGGAT CCACAACGCCTTCTTCTGATGCTGGTCGCACTCTGCAAGTCCAAAGAGATGATATTTGCCAACCATTAGAATCATTCAAT AACAAAGATTGCCTTTCCTCTGAACATGGAACTAGTGTTGATCTGTTTCAGTTGTCTTCTAATCTTCAGAGGGTGGAGCA GCAGAGAAACTCTGTTTTGGTAAAGTGGGAAATGGAGAACTATTGTTTCCCAACCGTGTAA
Protein sequence (LotjaGi2g1v0291800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MESWSNVPEEKGYLFPDEVDFSLDAFMRSTKTLVEWDNKPSCNFERDGFKSDREVVQSMEYVDLGFPLETSSCELDSNSS RRGNSSTHVIALDSSLGDEESESQHFSSLVESKTHYSSLIDLKLGRLADCKGASNEDVGERFTLTSRHPTTALAKRARTS SLPAQAPVCQVFGCNKDLSSSKDYHKRHKVCDVHSKTPKVIVNGVEQRFCQQCSRFHLLAEFDDGKRSCRRRLAGHNERR RKPQFDYMTGNKHTILQSYQGTKFLGSSLQNIPQFSFQDIFQSSILFSGKQDQIYHSEHVKLEEEFCSPLLAAPVTLDQE LSSCALSLLSTPSSQNPSRHLTGNPLIFQGAFKDDQVSASPLRINSEEVIKNGSTTPSSDAGRTLQVQRDDICQPLESFN NKDCLSSEHGTSVDLFQLSSNLQRVEQQRNSVLVKWEMENYCFPTV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 5 | 446 | 442 | 1.4E-195 | – | |
| PANTHER | 5 | 446 | 442 | 1.4E-195 | – | |
| Gene3D | 160 | 230 | 71 | 5.1E-35 | ||
| ProSiteProfiles | 166 | 243 | 78 | 33.009 | ||
| SUPERFAMILY | 167 | 248 | 82 | 4.45E-40 | ||
| Pfam | 169 | 242 | 74 | 7.3E-32 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. |
Expression pattern of LotjaGi2g1v0291800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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