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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0297500 |
| Transcript ID | LotjaGi2g1v0297500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ankyrin repeat family protein; TAIR: AT2G03430.1 Ankyrin repeat family protein; Swiss-Prot: sp|O75832|PSD10_HUMAN 26S proteasome non-ATPase regulatory subunit 10; TrEMBL-Plants: tr|I3RZ67|I3RZ67_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0297500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:77231391..77234848) extracted from Lotus japonicus Gifu genome v1.2.
CTTTATTGAGAAAGACAGTCACAGGTGATGAGACTACCCTAATTCAGAAAGCTTGGTAATATATCAATGGAGATGGAAGT AGACAGTGAGAAGAACCAGCAAGACACAGTGATGGTGAAAGAGAAGGATCTCTTCAAAGCTGCTGAAGAAGGTGACACCT CAACCTTCCAAGCATCGTCCCCTGAAACACTCTCCGAATCCCTCTCTCTAAGGAACGAAGACGCTCGCTCCCTTCTCCAT GTTGCCGCTTCTTCCGGCCACTCCCAGGTACCCTTTTAACCCTCCTCAAAAGGGTCTCTTATTTTCCCTTTCAATTGCTG TAAAAACATGTTCTTTTTGCGTTTGGACCAGAACCGAAATTAGGGTTCGTAAATAGTGAATTCAAGCTTAAATTTTGGGG GAAATGTTAATTTGTCATGTTTGTTGATGGGAATGTATCAGGTGGTGAAGATATTGTTGTCTGCTGATGCATCAGCTAGT GTGGTAAATAGTGCTGATGATGAAGGGTGGGCGCCGCTTCATTCTGCGGCCAGCATTGGGAATTTGGAGATAGTGGAGGC TTTGTTGAGCAAAGGTGACTGCTTTATTACCTTTAAAGTTTAAGAGATTTCCTGATGAAGCAGGCTGCATTTTTCTGATT ATTGTGTATTCCTTGACAAATTTTATTCAGTTGAACTTAATTTTTTAGATTTAGATAGACTTTTTTTGTTAGTGATGTTT TCCAAGGGGATATGGTGATTTCAATTGAATATTACATTTGAATAGAGTTGAAATGTATCTTCTCCAGCTTGATGATGTTT ATGCCCCTTCCCCCACTTAAAGCCATCTTTTAGCCCTATTCAGATAATGGCCTAGCATTAAGAAGCTTCTGAATTTAGGT AGAGCATGCTATTGAAAAAGTGGTACTGGTTACACAGTTAGTTGAGCGCTGTCAACAAGAAAGCTGTACCCATGTTGTGT TGAATTTCAGTATCTCTTTGGATGCTCCTAGTTGCATTTTAGAATTTCATACTAACCTGTCAAACATTCAGTCTCTCTTT TGATTTAAAATTGATGTTTTGAGTTAAGTATATACTAACATATGTGATAGATTGTAGTGAAATGTTGTGTCCCGTGATTT TTAGAAATTGATTCCTGTGTTCGCTTTGTATTGCATTTGGGTCTAATGTTGTATCTGTGTTTTTTAGGGTGTTAAATGCT TTTTTTGGTTAATTTTCATTTCATAGTTGTTAATTGAATATATTATCGAGTGCTGTCTATACGTTTAAAATTATGGAATA GCTCTTAAAAAGTTCACAAATCTAGTCATAGAATAATGCAGTACCATTGCATTGACCAATACGTCCATGTTTATATTTCA TTTACAATGTATAAAATTTATCAACTATCTTGAATGTTCTCCATTTTTGTTAGGAGCTGATGTTAATCTAAAAAATGGCG GGGGCCGAACAGCTTTACACTATGCCGCCAGTAAAGGTCGGGTGAAGATTGCTGAAATACTCATCTCACATGATGCCAAG ATTAATATAAAGGACAAGGTTGTAGCATGGACACATTTGATATATGTGTGGCATTGTCGTCTTCATGTCCTCCATTTTTC ATAACCACATTGTTAAGATGACATATATAATAATTTAGTGTATGTCTTGTACTATAATCAGGTTGGTTGCACCCCATTGC ATCGGGCAGCGAGCACTGGGAACTCTGAGTTGTGTGAACTTCTGATTGAAGAAGGGGCAGAGGTTGATGCTGTAGATAGA GCTGGTCAAACTCCTTTAATGAGTGCTGTAATTGACCGTAACAAAGAGGTATACTATTACTTATTCTATTTGTGTGCTTG CTTGCTCTTATGGTTACCTTATTAAGAACCATAGGTTGACTCATTTCCTGTCACTGATTAACACTTTCATCACTCATGTT ATATTTAATTGATGATAAGTGCCCTAGCAATAGTATCAATCTTTTTTTACACTAAAAGAACAATTGATATTCCTAGCATG ATATTTAAAGACGTTAAAATAATTTTCCTTTCTACTATTGAAAGAACATTTACATTCCTCCTTGTGTATCTTCCTTCTTC CCCCTCTGGGACAAAAACTATCTTAGAGGGATATATCCAAAATTTTCACTCATCTTTCAGCAATTTTTCTCTACAACTAT GTATGCCTTTTATATTAATAAATAGATTAGACGTTTTAGGTAAGATTAAACAGCAAAGAATAAGGATTGACACCCAAATA TTTGCTAGTCATGACTTTATCGTACTGCTTACAACTATTTCGGTTTAAAAGGAAATATCGGTTAGTAGTAGACTAGTAGG ATGTTATTGTTATCAAATGTGGAAAAATTGGTTGGAGGCATATGGAAAACTTCAAGATACTTATTGGTAGTTGATATGTA CCTCAGAACACTTTTTCTTTAATTTTTTTTATCAAATATGTTCGGTACATATTATCACTTACAGGATTAAGTATCAATGG TAAGTTAGTTTTAGAGTTGACTTCATTAGTAATTTTGTAATCAATATATACATAGAGTAGATTGGTGTCTATGATGAGTA GTTATGTTATTAGAGTCTCATAATTCTGGAACAACACACATTTATTCATGTTCATAAATCTCTATGTCTGGTTTCGCAGA TCGCCCTTCTTCTTATAAGACATGGAGCAGATGTGGATGTGGAGGACAAGGAAGGGTACACAGTGCTCGGTCGAGCTACA GATGAGTTTAGAGCAATATTAATCGATGCTGCCAAGGCCATGCTTGAGTAATACAACAAGAAGAAATTAGAAAATTGTCA TTGATGCAAAGAGAGCACAATACAGCAAATTAAGGTTGCTTTTGTTGAAAAAAAGTGGTCCTCCGTACTTTGCCCTGATC ATAGAAGCTGTTTTTAAAGTGAGATTTTACTTGTTTTTGGTGTTTATGTATACAATCAGAGCTTACGACTTGTTAGATCA TGCAATATGCTCTATGTAATGAAAGGTACATAGTATGTTGAAAGGGGTTATTTATGCATTATTGGTATGTTATGTTGGCA GTTTAAAAACAAATTAGAGATGGAAGATTAGAACTTTTCAGTAGAAGTGTGATAGGCATGCAGAACTCAAATCATAGACA ATATCAAACTCTATGATCCAACATAAATTTATTAGATAATCACAGTATTAACACAAAACACCACTAAAAGGAAAGGTTTG GATCAGGAAGAAACGGTAAACTTATCATAAAGCACAGAATTATTAAAAATTAACGCAAGGGGAAAATGGAAGTGGATAAA AAAGAGCAGGCATGCTTCATCTCCAAGGATCTGGTGAGAAAACCTAGGTTGTTGAGATTTTTTTTTGAAGTTTAGCAGCT TCTGCTGTTGTTGAAGATAGGTTGTTGAGATTAGGCTGGTAAGTTAAAAAATGTTAGAAACTTTTCTTTTGTCAATTCTT ACATGGTAGCTTCACACT
CDS sequence (LotjaGi2g1v0297500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGATGGAAGTAGACAGTGAGAAGAACCAGCAAGACACAGTGATGGTGAAAGAGAAGGATCTCTTCAAAGCTGCTGA AGAAGGTGACACCTCAACCTTCCAAGCATCGTCCCCTGAAACACTCTCCGAATCCCTCTCTCTAAGGAACGAAGACGCTC GCTCCCTTCTCCATGTTGCCGCTTCTTCCGGCCACTCCCAGGTGGTGAAGATATTGTTGTCTGCTGATGCATCAGCTAGT GTGGTAAATAGTGCTGATGATGAAGGGTGGGCGCCGCTTCATTCTGCGGCCAGCATTGGGAATTTGGAGATAGTGGAGGC TTTGTTGAGCAAAGGAGCTGATGTTAATCTAAAAAATGGCGGGGGCCGAACAGCTTTACACTATGCCGCCAGTAAAGGTC GGGTGAAGATTGCTGAAATACTCATCTCACATGATGCCAAGATTAATATAAAGGACAAGGTTGGTTGCACCCCATTGCAT CGGGCAGCGAGCACTGGGAACTCTGAGTTGTGTGAACTTCTGATTGAAGAAGGGGCAGAGGTTGATGCTGTAGATAGAGC TGGTCAAACTCCTTTAATGAGTGCTGTAATTGACCGTAACAAAGAGATCGCCCTTCTTCTTATAAGACATGGAGCAGATG TGGATGTGGAGGACAAGGAAGGGTACACAGTGCTCGGTCGAGCTACAGATGAGTTTAGAGCAATATTAATCGATGCTGCC AAGGCCATGCTTGAGTAA
Protein sequence (LotjaGi2g1v0297500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEMEVDSEKNQQDTVMVKEKDLFKAAEEGDTSTFQASSPETLSESLSLRNEDARSLLHVAASSGHSQVVKILLSADASAS VVNSADDEGWAPLHSAASIGNLEIVEALLSKGADVNLKNGGGRTALHYAASKGRVKIAEILISHDAKINIKDKVGCTPLH RAASTGNSELCELLIEEGAEVDAVDRAGQTPLMSAVIDRNKEIALLLIRHGADVDVEDKEGYTVLGRATDEFRAILIDAA KAMLE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 13 | 126 | 114 | 3.0E-29 | ||
| SUPERFAMILY | 22 | 229 | 208 | 3.63E-60 | ||
| PANTHER | 48 | 175 | 128 | 1.9E-84 | – | |
| Pfam | 50 | 119 | 70 | 1.7E-14 | ||
| ProSiteProfiles | 52 | 84 | 33 | 11.461 | ||
| ProSiteProfiles | 52 | 245 | 194 | 61.624 | ||
| SMART | 52 | 81 | 30 | 0.036 | ||
| SMART | 88 | 117 | 30 | 5.6E-6 | ||
| ProSiteProfiles | 88 | 120 | 33 | 14.986 | ||
| PANTHER | 100 | 238 | 139 | 1.9E-84 | – | |
| SMART | 121 | 150 | 30 | 2.5E-6 | ||
| ProSiteProfiles | 121 | 153 | 33 | 13.758 | ||
| PRINTS | 122 | 137 | 16 | 1.1E-7 | ||
| Pfam | 122 | 153 | 32 | 1.4E-5 | ||
| Gene3D | 127 | 242 | 116 | 6.2E-37 | ||
| ProSiteProfiles | 154 | 186 | 33 | 14.319 | ||
| SMART | 154 | 183 | 30 | 5.0E-5 | ||
| Pfam | 155 | 218 | 64 | 5.4E-12 | ||
| SMART | 187 | 216 | 30 | 0.0021 | ||
| ProSiteProfiles | 187 | 219 | 33 | 12.476 | ||
| PRINTS | 203 | 217 | 15 | 1.1E-7 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi2g1v0297500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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