Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0300100 |
| Transcript ID | LotjaGi2g1v0300100.3 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Argonaute family protein; TAIR: AT1G69440.1 Argonaute family protein; Swiss-Prot: sp|Q9C793|AGO7_ARATH Protein argonaute 7; TrEMBL-Plants: tr|D3GBV1|D3GBV1_LOTJA Reduced leaflet 3; Found in the gene: LotjaGi2g1v0300100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:77445026..77447905) extracted from Lotus japonicus Gifu genome v1.2.
ATGATGAACCATCTTGTTTCACATACAGATTCAGCCCCAAAGGAACTTCAGCGGCAAACTAAGGAATCCTTTAAAGGAGA TGATGGGAGGAAACTCATTCCAACAAGGAAGCAACAGGACTTAATTGTTGCAAGGAGGCCAGACTCAGGTGGAAAAGAAG GTTCTGTGATCTCTCTCCTTGCCAACCACTTTTTGGTGCAGTTTGATCCATCCCAAAAAATTTATCATTACAATGTTGAA ATTACTCCTCATCCCTCCAAGGATGTGGCAAGGGAAATCAAACAGAAATTGGTAAATAACAATTCTGCTATGCTCTCGGG TGCTCTGCCGGCATATGATGGGAGACAGAATCTTTACAGTTCAATTGAATTCCAAAACGATAAGCTTGAGTTCTACATTA GCCTCCTAATCCCAACAAGCAAACTGACTTCACCTTATGGAGAAATGTATGACTTGAAGGAGAAGAAAGAACAGCATAAA CTGTTCCGGATAAATATCAAACTAGTCTCAAAGATTGATGGGAAGGAGTTAACTAACTACTTGAGCAAAGAGGGTGATGA ATGGATTCCACTTCCACAGGATTATCTACATGCTTTGGATGTAGTTCTGAGGGAAAGCCCGACTGAGAAATGCATACCTG TAGGGAGATCATTCTACTCAAATTCAATGGGAAGAAGCAAAGACATTGGGGGAGGAGCTGTGGGATTGAGGGGATTCTTT CAGAGTCTTCGACCGACCCAACAAGGACTTGCTCTCAATCTCGATTTCTCAGTAACTGCATTCCATGAGAGTATAGGAGT GATTTCATACTTGCAGAAACGCCTCGAGTTTCTTCGAGACCTTTCTCAAAGGAAGACAACTCAATTAACTTGTGAAGAAA GGAAGGAAGTGGAGAAGGCACTGAAGAACATCAGGGTCTTTGTTTGCCACAGAGAAACAGTTCAGAGATACCGTGTCTAC GGCTTAACTGAGGAGGCTACTGAAAATCTTTGGTTTGCTGACAGGGATGGACAGAATCTGAGGCTTGTGAATTACTTCAA AGATCACTATAACTACGACATACAATTCCGAAAATTGCCATGCTTGCAGATTAGTAGGAGTAAACCTTGTTATCTTCCTA TGGAGCTTTGTGTGATCTGCGAAGGCCAGAAATTCCTCGGGAAACTGTCGGATGATCAGACAGCAAGAATACTCAAGATG GGCTGCCAAAGACCAGGAGAACGAAAAACCATCATCGAAGGAGTCATGAGAGGAAATGTTGGGTCTACCAGGTAACAAGA TACAATAGTTGTTTCACTTTATTGAACATTGTGTATAATCTTGTACATTATTACTATGGAGCATTTGCTTTCTTTCTTTT TCATGTTTATGTTGTTTTGGTTTCTAATGCCTTAAAAGTAAAATCCTTTTGACAGTGGTGAGCAGGAAAGAGAATTCAAA CTCCAAGTCTCAAGAGAAATGACAAAGTTGACTGGGAGAATTCTTCACCCTCCCAAACTAAAGCTTGGAGATGGAGGTCA TGTGAGAAACCTTACTCCTTCACGCCATGACCGTCAGTGGAACCTTCTAGATGGCAATGTCTTTGAAGGAACTACAATTG AAAGGTGGGCACTTGTAAGCTTTGGGGGCACCCCTGAGCAGAAGTCTAATATCCCTAGATTCATAAACCAATTATGTCAA AGGTGTGAACAACTGGGCATTTTTCTTAATAAGAACACAGTTATGAGTCCCCAGTTTGAATCAAGCCAGGTTCTTAACAA TGTCACACTTTTGGAATCTAAGCTCAAGAGAATCCAGAGGACTGCCTCAAACAATCTCCAGCTTCTTATTTGTGTAATGG AGAGAAAACACAAAGGGTATGCAGACTTGAAACGGATTGCTGAGACAAGTATCGGTCTCATAAGCCAATGCTGCCTGTAC CCAAATCTGTGCAAGTTAAGTTCACAGTTCTTGGCAAATTTGGCCCTCAAAATCAATGCCAAAGTTGGTGGATGCACAGT TGCCCTCTACAACTCACTGCCTTCTCAATTACCACGCCTCTTTCACATCGATGAGCCCGTGATATTCATGGGAGCCGATG TGACTCATCCTCATCCTCTTGATGATTCCAGTCCATCTGTTGCTGCTGTTGTTGGTAGCATGAATTGGCCAACAGCAAAC AAGTACATTTCAAGAATAAGGTCCCAAACACACAGACAAGAAATTATCCAGGATCTTGGTCCAATGGTGGGGGAATTGCT TGATGATTTTTATCAGGAGGTAGAGAAACTCCCCAACCGAATAGTTTTCTTTAGAGACGGAGTTAGCGAAACACAATTTC ACAAAGTGATGCAAGAGGAACTGCAATCCATAAGACACGCATGTGAAAGGTTTCCTGATTATAAACCTCTCATTACCTTT GCAGTTGTGCAGAAGAGGCATCACACAAGGTTGTTTCCCTTTCCCGGTGAAACTGATCCGTCTTCCCCTCAGAATAACTT TTTATACGAAAACATTCCTCCCGGGACCGTGGTCGATTCAGTGATTACTCATCCGAAGGAATTTGATTTCTATCTCTGTA GTCATTGGGGTGTGAAAGGAACAAGCAGACCAACTCATTACCATGTCTTGTGGGATGAAAACCAGTTTACTTCTGATGAG CTTCAGAAGCTGGTTTACAATTTGTGCTACACTTTTGTTAGGTGTACAAAGCCAATTTCTTTGGTGCCTCCTGCATATTA TGCACATTTAGCTGCATACAGAGGAAGACTTTACCTTGAGCGATCAGAGTCCTTAGGTTTGTTCAGAAACACATCTACAT TATCAAGAGCTGCTCCTCCAAAGACAGCACCACTTCCTAAACTTAGTGAAAACATCAAGAAGCTCATGTTCTACTGCTAG
CDS sequence (LotjaGi2g1v0300100.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGAACCATCTTGTTTCACATACAGATTCAGCCCCAAAGGAACTTCAGCGGCAAACTAAGGAATCCTTTAAAGGAGA TGATGGGAGGAAACTCATTCCAACAAGGAAGCAACAGGACTTAATTGTTGCAAGGAGGCCAGACTCAGGTGGAAAAGAAG GTTCTGTGATCTCTCTCCTTGCCAACCACTTTTTGGTGCAGTTTGATCCATCCCAAAAAATTTATCATTACAATGTTGAA ATTACTCCTCATCCCTCCAAGGATGTGGCAAGGGAAATCAAACAGAAATTGGTAAATAACAATTCTGCTATGCTCTCGGG TGCTCTGCCGGCATATGATGGGAGACAGAATCTTTACAGTTCAATTGAATTCCAAAACGATAAGCTTGAGTTCTACATTA GCCTCCTAATCCCAACAAGCAAACTGACTTCACCTTATGGAGAAATGTATGACTTGAAGGAGAAGAAAGAACAGCATAAA CTGTTCCGGATAAATATCAAACTAGTCTCAAAGATTGATGGGAAGGAGTTAACTAACTACTTGAGCAAAGAGGGTGATGA ATGGATTCCACTTCCACAGGATTATCTACATGCTTTGGATGTAGTTCTGAGGGAAAGCCCGACTGAGAAATGCATACCTG TAGGGAGATCATTCTACTCAAATTCAATGGGAAGAAGCAAAGACATTGGGGGAGGAGCTGTGGGATTGAGGGGATTCTTT CAGAGTCTTCGACCGACCCAACAAGGACTTGCTCTCAATCTCGATTTCTCAGTAACTGCATTCCATGAGAGTATAGGAGT GATTTCATACTTGCAGAAACGCCTCGAGTTTCTTCGAGACCTTTCTCAAAGGAAGACAACTCAATTAACTTGTGAAGAAA GGAAGGAAGTGGAGAAGGCACTGAAGAACATCAGGGTCTTTGTTTGCCACAGAGAAACAGTTCAGAGATACCGTGTCTAC GGCTTAACTGAGGAGGCTACTGAAAATCTTTGGTTTGCTGACAGGGATGGACAGAATCTGAGGCTTGTGAATTACTTCAA AGATCACTATAACTACGACATACAATTCCGAAAATTGCCATGCTTGCAGATTAGCCAGAAATTCCTCGGGAAACTGTCGG ATGATCAGACAGCAAGAATACTCAAGATGGGCTGCCAAAGACCAGGAGAACGAAAAACCATCATCGAAGGAGTCATGAGA GGAAATGTTGGGTCTACCAGTGGTGAGCAGGAAAGAGAATTCAAACTCCAAGTCTCAAGAGAAATGACAAAGTTGACTGG GAGAATTCTTCACCCTCCCAAACTAAAGCTTGGAGATGGAGGTCATGTGAGAAACCTTACTCCTTCACGCCATGACCGTC AGTGGAACCTTCTAGATGGCAATGTCTTTGAAGGAACTACAATTGAAAGGTGGGCACTTGTAAGCTTTGGGGGCACCCCT GAGCAGAAGTCTAATATCCCTAGATTCATAAACCAATTATGTCAAAGGTGTGAACAACTGGGCATTTTTCTTAATAAGAA CACAGTTATGAGTCCCCAGTTTGAATCAAGCCAGGTTCTTAACAATGTCACACTTTTGGAATCTAAGCTCAAGAGAATCC AGAGGACTGCCTCAAACAATCTCCAGCTTCTTATTTGTGTAATGGAGAGAAAACACAAAGGGTATGCAGACTTGAAACGG ATTGCTGAGACAAGTATCGGTCTCATAAGCCAATGCTGCCTGTACCCAAATCTGTGCAAGTTAAGTTCACAGTTCTTGGC AAATTTGGCCCTCAAAATCAATGCCAAAGTTGGTGGATGCACAGTTGCCCTCTACAACTCACTGCCTTCTCAATTACCAC GCCTCTTTCACATCGATGAGCCCGTGATATTCATGGGAGCCGATGTGACTCATCCTCATCCTCTTGATGATTCCAGTCCA TCTGTTGCTGCTGTTGTTGGTAGCATGAATTGGCCAACAGCAAACAAGTACATTTCAAGAATAAGGTCCCAAACACACAG ACAAGAAATTATCCAGGATCTTGGTCCAATGGTGGGGGAATTGCTTGATGATTTTTATCAGGAGGTAGAGAAACTCCCCA ACCGAATAGTTTTCTTTAGAGACGGAGTTAGCGAAACACAATTTCACAAAGTGATGCAAGAGGAACTGCAATCCATAAGA CACGCATGTGAAAGGTTTCCTGATTATAAACCTCTCATTACCTTTGCAGTTGTGCAGAAGAGGCATCACACAAGGTTGTT TCCCTTTCCCGGTGAAACTGATCCGTCTTCCCCTCAGAATAACTTTTTATACGAAAACATTCCTCCCGGGACCGTGGTCG ATTCAGTGATTACTCATCCGAAGGAATTTGATTTCTATCTCTGTAGTCATTGGGGTGTGAAAGGAACAAGCAGACCAACT CATTACCATGTCTTGTGGGATGAAAACCAGTTTACTTCTGATGAGCTTCAGAAGCTGGTTTACAATTTGTGCTACACTTT TGTTAGGTGTACAAAGCCAATTTCTTTGGTGCCTCCTGCATATTATGCACATTTAGCTGCATACAGAGGAAGACTTTACC TTGAGCGATCAGAGTCCTTAGGTTTGTTCAGAAACACATCTACATTATCAAGAGCTGCTCCTCCAAAGACAGCACCACTT CCTAAACTTAGTGAAAACATCAAGAAGCTCATGTTCTACTGCTAG
Protein sequence (LotjaGi2g1v0300100.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMNHLVSHTDSAPKELQRQTKESFKGDDGRKLIPTRKQQDLIVARRPDSGGKEGSVISLLANHFLVQFDPSQKIYHYNVE ITPHPSKDVAREIKQKLVNNNSAMLSGALPAYDGRQNLYSSIEFQNDKLEFYISLLIPTSKLTSPYGEMYDLKEKKEQHK LFRINIKLVSKIDGKELTNYLSKEGDEWIPLPQDYLHALDVVLRESPTEKCIPVGRSFYSNSMGRSKDIGGGAVGLRGFF QSLRPTQQGLALNLDFSVTAFHESIGVISYLQKRLEFLRDLSQRKTTQLTCEERKEVEKALKNIRVFVCHRETVQRYRVY GLTEEATENLWFADRDGQNLRLVNYFKDHYNYDIQFRKLPCLQISQKFLGKLSDDQTARILKMGCQRPGERKTIIEGVMR GNVGSTSGEQEREFKLQVSREMTKLTGRILHPPKLKLGDGGHVRNLTPSRHDRQWNLLDGNVFEGTTIERWALVSFGGTP EQKSNIPRFINQLCQRCEQLGIFLNKNTVMSPQFESSQVLNNVTLLESKLKRIQRTASNNLQLLICVMERKHKGYADLKR IAETSIGLISQCCLYPNLCKLSSQFLANLALKINAKVGGCTVALYNSLPSQLPRLFHIDEPVIFMGADVTHPHPLDDSSP SVAAVVGSMNWPTANKYISRIRSQTHRQEIIQDLGPMVGELLDDFYQEVEKLPNRIVFFRDGVSETQFHKVMQEELQSIR HACERFPDYKPLITFAVVQKRHHTRLFPFPGETDPSSPQNNFLYENIPPGTVVDSVITHPKEFDFYLCSHWGVKGTSRPT HYHVLWDENQFTSDELQKLVYNLCYTFVRCTKPISLVPPAYYAHLAAYRGRLYLERSESLGLFRNTSTLSRAAPPKTAPL PKLSENIKKLMFYC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 31 | 31 | - | – | |
| MobiDBLite | 14 | 31 | 18 | - | – | |
| PANTHER | 35 | 858 | 824 | 0.0 | – | |
| PANTHER | 35 | 858 | 824 | 0.0 | – | |
| Pfam | 57 | 203 | 147 | 7.2E-27 | ||
| SMART | 212 | 264 | 53 | 3.4E-22 | ||
| Pfam | 213 | 262 | 50 | 3.8E-17 | ||
| Gene3D | 258 | 371 | 114 | 6.9E-17 | – | |
| SUPERFAMILY | 259 | 400 | 142 | 2.35E-27 | ||
| ProSiteProfiles | 272 | 364 | 93 | 17.28 | ||
| CDD | 275 | 367 | 93 | 8.7086E-20 | – | |
| Pfam | 275 | 366 | 92 | 1.5E-15 | ||
| CDD | 412 | 854 | 443 | 0.0 | – | |
| Gene3D | 429 | 606 | 178 | 2.0E-37 | – | |
| SUPERFAMILY | 528 | 855 | 328 | 4.3E-82 | ||
| SMART | 543 | 855 | 313 | 9.5E-109 | ||
| ProSiteProfiles | 543 | 855 | 313 | 41.691 | ||
| Pfam | 544 | 852 | 309 | 2.6E-93 | ||
| Gene3D | 614 | 894 | 281 | 4.2E-107 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi2g1v0300100.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…