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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0302300 |
| Transcript ID | LotjaGi2g1v0302300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Dof zinc finger protein; TAIR: AT3G47500.1 cycling DOF factor 3; Swiss-Prot: sp|Q8LFV3|CDF3_ARATH Cyclic dof factor 3; TrEMBL-Plants: tr|A0A1J7HNV8|A0A1J7HNV8_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0302300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:77637424..77640879) extracted from Lotus japonicus Gifu genome v1.2.
AAAGATCTCATTGGCCACAAGAATTTGTGGCTCAAAATCTTCCCCTTTGCTGAAGTGGCATTCCAACCTCTTTAATAAAT AAACCCCTTCACACAACATGAATATTTCCCCCTCCTCTGTCTCTCTCTTTCTTCTTCATCACTATTCAGTATTCACTATC CATTTTTCGTTCCAAACCATGATCAATTAGTCAGAGCTTGTAAAGGAAAACAAAAGCAACTACTACTTCTATATGTGTGC ATTTTTTTCCACAATTTTCTCCCATTTGTTTCAAGAAAGAGAAAGATCCTGAGCCAAAAATAGAAGAGGAGAGAGAAAGG AACATAGCTATCTATTGAGCTGTGACATTAAACATCACAAAAGGAAATGTCTGAGGTTATGAAAGACTCTGCCATAAAGC TGTTTGGGAGAACGATTTCTCTGCCACATAACAGAAAGGTTTCTGCCAATGATTCTTCTTCTGATCATAGTCCACCTTCA TCTTCATCTTCTCCTGGTGAATTGAGCTCTGCAACGAAACATGAAGCAGAAAGAATTGAGGTATGTTACTACATAACTAA TGTGTTTTGCAAATTTAAAAGCGACCCTTTTTTTCATGAGCTAGCAATTGTTAATGGGTTCATTTCAAAAATTTCTTTTT AAATGTTAAATTGCTTTTGGTTGAGGTGTCAATTGAGGCTCATAACTGCAATATATTCTTATTCTTGGCTGTTTGATAAC TTTTTGTTTGAAAAGTATACCAAGTATTTTGCATGGTCAGTGAGTGATGGTTGATGAAATTGTTTACTTTTCTCATTTCT GAATCTACTGAATTGGTTTTTAAGTAGTGGCCACAAGTTGTAGTGGGGGCACTGTCAGCAAAACTAGATCCAGTTCATGA TTCTTGAATAGTAGAATGTAATTTTAAGAATAACGAACAATATTATGTGGTTGGACTTGTTTTGGTTTTGTCCAGTCTCT TAGTAAATCATTGATCTTGCTTTATTAATATCCCAAGTAATTAAGTTTGCAAATTAATCTGATTCATAATTGTAGACTTT GATCCTAAACTGGTTTGATTTGATACTTCACCAATGAGTTCATGTCTTATTATATTAGATCTCTTGTAGCATCCTATAAG TACTGTAGCCTTTAGATATGTTCGAAGATTTCTTATTAAATTCCTTGCTCCACCAAAATCCAATGAAGTTGCTTTTCACG CGTTGGACTTTAATTGGATCCAACTTTTATTTTGGTTTGACACTCTGTCCATATCTAATTGCTTCTTCAGTTTCCAAGCA TGACTTGTCCCACAGCAATTCTTTATAAAATATTTTGCAAGGATAAAATAATAGACTAAGATCCTGTTAATTGAATTTGA ACTAACTATGTGAATTGCAACCTTATGTCAGTCCATCTCTTTTTATAAAAATTTAATATGATGAAAAAAATAGTCACAAA CTTTAAACTTAAGAAAATTTGAGAGAATTTATAATTAAAAGATCCTATTCCTAAAATAATATGTCCTCTGTTTCCTCCCC TGTTTTCACTGTTGGATTCATTTCACTAACTATCTACCTTGCACTCTAAGATATCATGAACATGGATGTTTGAATAATTG AATTCTAACTTCTAAATTAAAGATTTCCCCCCTCTAAATGATGTATTAGAAAAAGGGAAATAGAATAAAATTTTAAGAAT AATAAAGATTAATGACCATTTATTGTTTCCATTTATATGTGTCATAACAAACAAATCAGTTAGCTTAGCTAAAGGATATA AACTTAATATGATTTTGTGGCTTGTATTTTGGTCTTCACGTTGAAGCTTTGACTTCACTTTTTTGCAAGTTTTTATGTGT GGCTACTAGCTATAGGGAATAAGTATTTCACTTTTTCTTATCTTAGTATTGTTCTTCAATTTCAGGAACCTTCAAAGAAA GAACTCATCACATCAACACAAGATAAAAATCTCTCACATCAATCCACAGAGGATTCAAAATCCCCCACATCTTCAACCAT TTTTGAGAACCCCAAGACTCCCTCATCTGAAAGAGAAACCTCTCTTCTGAAATCCTCCAAAAATGGAGAACAGAGTGAGA CAAGTGAATCACAAGACAACAAAGGTCTAAAGAAACCAGACAAAATTCTCCCATGTCCGCGATGCAACAGCATGGATACA AAATTCTGCTACTACAACAACTACAACGTCAACCAGCCCCGCCACTTCTGCAAGAACTGCCAAAGGTACTGGACCGCCGG AGGCACCATGAGGAACGTGCCCGTAGGCGCAGGCCGCCGCAAGAACAAGAACATTTCCTCTTCTTGTTCTTCTGCGGCCG CCTCGCATTATCGCCAAATGATGATGATGGTTCCTGAGACCCTTCAAGCCAATGAAGAAGCTGTGTTGACCTTTGGATCA GATTCTTCTCCTCTCTGCAATTCCATGGCTTCTGGACTGAGCCTTGCAGATAAAACACAACCCAAAGCTCTGTTTCATGC ACCAAAACAGAGCATTTTTGTCAGAGAAGATAGTAATGGAGATGATAGAACTTCATCTGAAAAGAGAGGCAATTTTGGCT CATATGAACAATCAATTGATAAGAATTGTCAAGTTTTTCCTCCTCAATTTCCCTTCCAAGGTTCTTCTTCTATCCCTTGG CCTTATCCATGGAACCCTGCAATGCCTTCCCCTGCTTTTTGCCAACTAAACTACCCTGTGCCATTTTATCATGCACCAGC ATTCTGGGCACACCCACACCCTATCTCTCCTCAATCTTCTGCTAACTCACCTGCTTTGGGGAAACACTCAAGGGAAGGGG AAATTCTCTTTCCATCAAACTCAGAGAAGGAAAAGTCTAGTTCTAGAAGTAATGGTGTGTTGATTCCAAAGACACTGAGA ATTGATGACCCTAATGAAGCTTCAAAGAGTTCTATATGGTCAACATTGGGGATCAAGCATGATGAGAAGGGAAACTCTCT CAATGGAGGAGGAAGCCTTTTCAAGGGATTTGACAAGAAGAGTCATGTTGCTGAAGCATCCCCTTTGTTGCATGCAAACC CTGCAGCTTTGTCAAGATCTCGTATCTTCCATGAGAGGACTTGAATCTTGATTATTTTCCATTGCAAACCTCATTCTGCT AACATGTTTTTGTTTTTCTCCTTGAGAAGTTGAATAATTGTATTGTTGACCAACCTTTAAGAAGGATTTATAGGATAGAA GAGTTTATAGTTTAATTAGCTTCCAACCTGTCAGTGTGACAGGATTTTTCTTCATTTTTAGATGACTTGATTTAGTATCT CTGATGTATATATATGTGAGACAAGATAAATAACAAGGAGGAAAGACAGGAAAGAATTTTCTTGGAACAAAATTCAAGGA TTTAGAATAAAGAACTCTTCATCAAAAGCCTGCTATTGCTTCTTCTTCTTCTTAATGAGATTCTATGCTACAATATGGTA ATGTTAACTTCCAAAA
CDS sequence (LotjaGi2g1v0302300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTGAGGTTATGAAAGACTCTGCCATAAAGCTGTTTGGGAGAACGATTTCTCTGCCACATAACAGAAAGGTTTCTGC CAATGATTCTTCTTCTGATCATAGTCCACCTTCATCTTCATCTTCTCCTGGTGAATTGAGCTCTGCAACGAAACATGAAG CAGAAAGAATTGAGGAACCTTCAAAGAAAGAACTCATCACATCAACACAAGATAAAAATCTCTCACATCAATCCACAGAG GATTCAAAATCCCCCACATCTTCAACCATTTTTGAGAACCCCAAGACTCCCTCATCTGAAAGAGAAACCTCTCTTCTGAA ATCCTCCAAAAATGGAGAACAGAGTGAGACAAGTGAATCACAAGACAACAAAGGTCTAAAGAAACCAGACAAAATTCTCC CATGTCCGCGATGCAACAGCATGGATACAAAATTCTGCTACTACAACAACTACAACGTCAACCAGCCCCGCCACTTCTGC AAGAACTGCCAAAGGTACTGGACCGCCGGAGGCACCATGAGGAACGTGCCCGTAGGCGCAGGCCGCCGCAAGAACAAGAA CATTTCCTCTTCTTGTTCTTCTGCGGCCGCCTCGCATTATCGCCAAATGATGATGATGGTTCCTGAGACCCTTCAAGCCA ATGAAGAAGCTGTGTTGACCTTTGGATCAGATTCTTCTCCTCTCTGCAATTCCATGGCTTCTGGACTGAGCCTTGCAGAT AAAACACAACCCAAAGCTCTGTTTCATGCACCAAAACAGAGCATTTTTGTCAGAGAAGATAGTAATGGAGATGATAGAAC TTCATCTGAAAAGAGAGGCAATTTTGGCTCATATGAACAATCAATTGATAAGAATTGTCAAGTTTTTCCTCCTCAATTTC CCTTCCAAGGTTCTTCTTCTATCCCTTGGCCTTATCCATGGAACCCTGCAATGCCTTCCCCTGCTTTTTGCCAACTAAAC TACCCTGTGCCATTTTATCATGCACCAGCATTCTGGGCACACCCACACCCTATCTCTCCTCAATCTTCTGCTAACTCACC TGCTTTGGGGAAACACTCAAGGGAAGGGGAAATTCTCTTTCCATCAAACTCAGAGAAGGAAAAGTCTAGTTCTAGAAGTA ATGGTGTGTTGATTCCAAAGACACTGAGAATTGATGACCCTAATGAAGCTTCAAAGAGTTCTATATGGTCAACATTGGGG ATCAAGCATGATGAGAAGGGAAACTCTCTCAATGGAGGAGGAAGCCTTTTCAAGGGATTTGACAAGAAGAGTCATGTTGC TGAAGCATCCCCTTTGTTGCATGCAAACCCTGCAGCTTTGTCAAGATCTCGTATCTTCCATGAGAGGACTTGA
Protein sequence (LotjaGi2g1v0302300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSEVMKDSAIKLFGRTISLPHNRKVSANDSSSDHSPPSSSSSPGELSSATKHEAERIEEPSKKELITSTQDKNLSHQSTE DSKSPTSSTIFENPKTPSSERETSLLKSSKNGEQSETSESQDNKGLKKPDKILPCPRCNSMDTKFCYYNNYNVNQPRHFC KNCQRYWTAGGTMRNVPVGAGRRKNKNISSSCSSAAASHYRQMMMMVPETLQANEEAVLTFGSDSSPLCNSMASGLSLAD KTQPKALFHAPKQSIFVREDSNGDDRTSSEKRGNFGSYEQSIDKNCQVFPPQFPFQGSSSIPWPYPWNPAMPSPAFCQLN YPVPFYHAPAFWAHPHPISPQSSANSPALGKHSREGEILFPSNSEKEKSSSRSNGVLIPKTLRIDDPNEASKSSIWSTLG IKHDEKGNSLNGGGSLFKGFDKKSHVAEASPLLHANPAALSRSRIFHERT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 450 | 450 | 1.8E-149 | – | |
| PANTHER | 1 | 450 | 450 | 1.8E-149 | – | |
| MobiDBLite | 14 | 133 | 120 | - | – | |
| MobiDBLite | 21 | 48 | 28 | - | – | |
| MobiDBLite | 49 | 66 | 18 | - | – | |
| MobiDBLite | 67 | 119 | 53 | - | – | |
| Pfam | 131 | 187 | 57 | 3.9E-32 | ||
| ProSiteProfiles | 133 | 187 | 55 | 28.975 | ||
| ProSitePatterns | 135 | 171 | 37 | - | ||
| MobiDBLite | 256 | 277 | 22 | - | – | |
| MobiDBLite | 258 | 272 | 15 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi2g1v0302300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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