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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0303700 |
| Transcript ID | LotjaGi2g1v0303700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Zinc finger homeodomain protein; TAIR: AT1G69600.1 zinc finger homeodomain 1; Swiss-Prot: sp|Q9SEZ1|ZHD11_ARATH Zinc-finger homeodomain protein 11; TrEMBL-Plants: tr|I1JE45|I1JE45_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0303700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:77747862..77751719) extracted from Lotus japonicus Gifu genome v1.2.
CCTTAAATCCAATATTCCAATACCACTAATTAAACTATAGATAAGATCAACCCAACTTGTTAATTAAAGCACGATATGAA CTTAAGAAGCCATATCACTATTCATAAAAATACTTTATTTACTAAATAGACAATTCACTTTTAGATTTAAAAGCCCACAT CATCTATTCTTATGTACCGCCATGACAAGATTTTGTATAATATCTAAACTTTAGGTTTGTGTTCTCTTCATCAGATCATC TTGGATTGCTTCATCCCCCCTAATTAATCCCCATTTTAAACCTCTTATTTTGTCATCTCATCCCCTCCATTACAATACAA ATTAAACCATCATCATTAGTAAACCATTTCCATTTTCTATCAAAACCTTCATTAGATTCCCATTTTCCAATTTCATGCCA ACAATATAATTCCAAAGAGTGCTTTAAACTTGTCAAACCCCTAAATCTAATCCCCCAACACACACACACACACACACACT CTCTCTCTATCTCTCTTTGAAATGGACTTGAAAACAGAAACTCCACCACCACCGACTCAACACCGCCACCTCATAACCGC CACCCCATCACCACCGTCCACGGTGGCGGTTTCCTACAAAGAGTGCCTCAGGAACCACGCAGCCAGCTTAGGCGCCCACG CACTCGACGGCTGCGGCGAGTTCATGCCCTCCGCCGAGCCCCGCTCCCAGCTAACATGCGCCGCCTGCGGCTGCCACCGC AACTTCCACCGCCGTGACACAAAACAGCAATATTCCAACCCCACCTTCATCAGCTTCTACCCCAGCATCAGCACAAGCCC GAGTTCAAGTCCAAGCCGCTCTCCACCGCCGCTCTCTCATCATTTCCCACCCTCCCACCACCACCTTCACAGCCAGATAT CAAAGTCGGCGCCGCCGCACGTGCAGTTAGCTCTTGGAACAGAGAACCCGAGCAAGAAGAAGAGGTGCAGGACCAAGTTT AGTGAAGAGCAGAAGGGGAAGATGCTGGAATTCTCAGAGAAATTGGGTTGGAGAATGCAGAGAGAGGAGGAAGGTTCGAT CCAGAAGTTTTGTGATGGCATTGGCGTGTCCAGAGAGGTGTTCAAGGTTTGGATGCACAACAACAAGAGTAGATCTTCCT CTGAGATTGGGAATGAGAAGAAGATCAATGGTGGTGGATATGGCTTTCAACTTCTTAGTGATATTAACAATCCTCACAGC AGAAATAGCAGCACCGATTAATGATCACATTCACAGAAATTAACCTTGTTAGCTCTGAATGTTTTAAATTGGGGTGACAG TCATGCGATGGATTCGTGGTGGATTGATGCAGACATGCAGTAGCAGTTGTGGTCTCATGTTTGGGAGTTCAAAATCCTTG ACCTTGTGACAACAATTGTTTTCAAACCTGATACTCTCATGTTCACCATCTTTATCTTGACTCCTCAAGAAATAACAATT TGGTTCTTATTAGTGGTAATTTTTTTGTTTATTATTAATCTCTCACTACACAATTAAAGCACTAATTAGTGATAGAGTTG GGGTACAATCAGCTCACTAAGTAGTAGAGGCCGGTTAATGAGTTTGTTTTTCATTTACAAAAGTTATGAAGTGCAACAAT GTGAGTCTACTTAGCTTGCTTTTTTTGTTCATCTATAACTTTCCCTATTTTTTATTGATGATATCAGCTAATTAAGGTCT TAGAAAGGTTAATTTAATTTTCAACCACTTACCTATCGCTTACTTATATATCATACCGGAAAAATATTCTTCCCTTAGTT TATGCTAATCGATTGGATGTTGAGAAAATAGAGAATAACGTGAAAGAGTAGAGAGAGAGATTGAGGGAAAATATATTATT GACTTAATTAAAACTGAAAGCAATACATGTCTTATATAAAAGACCTAACTTACTAGAAGATAACTAAAAGATAACTTCTT ATCATAATAACTAAATCAGTTATTATCTTTTATTCTAGCCTCTATCTAATAGCACTATATCACTATCTATTAGCTAGATT TAATATTTGAATTAATATCCACAATACCCCCCCTTAATTCAAATACCCAAGAGATACTACACCTATCTCTTTCCTTAAGA TCACAAATCTTTCAGTCTTCAAAGGCTTGCCACCATTCTTTGCAGATTCACCTCTCCTTTTGGACGATTCTGGCTTGTCA GAATTATCTTGAGACCACTTTGACTTGTTGTCGGACTTTCCTTTGCCTGTCCACTTCTTCTTTTTGCCATCATGATTGTC CAGACCAACCTTCAAAGCTTGTTCTGCAACTTTCACAGAATTACGATCAGCAAGGCGCATCTCATGTGCTTCCAATGAAC TCTGCAACTCTTCTATCTTCATGCTGTCCACATCTTTAGATTCCTCAATTGCCACTACGATGTAGTCAAATTTGGGAGCC AAGGACCTCATGATTTTCTCTATCACCATCACATCAGTGATCTTTTCTCCACAGCCCTTCATTAAATTGACAGTGGTTAG GATCTTGGTGAAGTATTCACCAACCTTTTCATTCTCCTCCATCTGAAGACCTTCATACTGTCTTCGAAGAGTTTGCAACT TTACCTTCTTTACCTTGTCACTGCCACTATGAACTTTCTGCAGAATGTCCCACATCTCCTTTGCTGAAGATGCATTTGCT ATTTTTTCAAAATGCGTATCATCCACGCATTGATGAATGAGAAACATTGCCTTACAATTCTTCTTCTTCATATCGTTATG AAGAGTCTTCTGTTCTTCAGTCATGTCTTGGGTCAGTGGTTGAAACCCATTCTCTATAACATCAAGAACATCTTGAAACC CAAATAGAATTTTCATCTGAGAATTCCATCGATCCCAATTCTTATTAGTTAGAACTGGGAGATTTACTCCCGGCAGATTG TTACTTGCCATCGTGAGGGTTGGTTTCTTGATCAAAATCGAGATTCATAGCGTGTAGGGGAGGAACCTCTGAAACTCGCA GCTTCCACTAAGTTCAGAATCGCAGAATTACAATTCTGATGAAGGACGAGACTCGCAGAATCGCACTTCAACAAAACCGA GCCAAACAGATTTGAAACACACAGTTTCACAGCAACCCTAAACCACCAAACCTATCACAGGCCTCGAAACTCGCCGAGCC CCGCTCCCAGCTAACATGCGCCGCCTGCGGCTGCCACCGCAACTTCCACCGCCGTGACACAAAACAGCAATATTCCAACC CCACCTTCATCAGCTTCTACCCCAGCATCAGCACAAGCCCGAGTTCAAGCCCAAGCCGCTCTCCACCGCCGCTCTCTCAT CATTTCCCACCCTCCCACCACCACCTTCACAGCCAGATATCAAAGTCGGCGCCGCCGCACGTGCAGTTAGCTCTTGGAAC AGAGAACCCGAGCAAGAAGAAGAGGTGCAGGACCAAGTTTAGTGAAGAGCAGAAGGGGAAGATGCTGGAATTCTCAGAGA AATTGGGTTGGAGAATGTAGAGAGAGGAGGAAGGTTCGATCCAGAAGTTTTGTGATGACATTGGCGTGTCCAGAGAGGTG TTCAAGGTTTGGATGCACAACAACAAGAGTAGATCTTCCTCTGAGATTGGGAATGAGAAGAAGATCAATGGTGGTGGATA TGGCTTTCAACTTCTTAGTGATATTAACAATCCTCACAGCAGAAATAGCAGCACCAATTAATGATCACATTCACAGAAAT TAACCTTGTTAGCTCGGGAGGTTTTAAATTGGGGTGACAGTCATGCGATGGATTCGTGGTGGATTGATGCAGACATGCAG TAGCAGTTGTGGTCTCATGTTTGGGAGTTCAAAATCCTTTACCTTGTGACAAACAATTGTTTTCAAACCTGATACTCTCA TGTTCACCATCTTTATCT
CDS sequence (LotjaGi2g1v0303700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGACTTGAAAACAGAAACTCCACCACCACCGACTCAACACCGCCACCTCATAACCGCCACCCCATCACCACCGTCCAC GGTGGCGGTTTCCTACAAAGAGTGCCTCAGGAACCACGCAGCCAGCTTAGGCGCCCACGCACTCGACGGCTGCGGCGAGT TCATGCCCTCCGCCGAGCCCCGCTCCCAGCTAACATGCGCCGCCTGCGGCTGCCACCGCAACTTCCACCGCCGTGACACA AAACAGCAATATTCCAACCCCACCTTCATCAGCTTCTACCCCAGCATCAGCACAAGCCCGAGTTCAAGTCCAAGCCGCTC TCCACCGCCGCTCTCTCATCATTTCCCACCCTCCCACCACCACCTTCACAGCCAGATATCAAAGTCGGCGCCGCCGCACG TGCAGTTAGCTCTTGGAACAGAGAACCCGAGCAAGAAGAAGAGGTGCAGGACCAAGTTTAGTGAAGAGCAGAAGGGGAAG ATGCTGGAATTCTCAGAGAAATTGGGTTGGAGAATGCAGAGAGAGGAGGAAGGTTCGATCCAGAAGTTTTGTGATGGCAT TGGCGTGTCCAGAGAGGTGTTCAAGGTTTGGATGCACAACAACAAGAGTAGATCTTCCTCTGAGATTGGGAATGAGAAGA AGATCAATGGTGGTGGATATGGCTTTCAACTTCTTAGTGATATTAACAATCCTCACAGCAGAAATAGCAGCACCGATTAA
Protein sequence (LotjaGi2g1v0303700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDLKTETPPPPTQHRHLITATPSPPSTVAVSYKECLRNHAASLGAHALDGCGEFMPSAEPRSQLTCAACGCHRNFHRRDT KQQYSNPTFISFYPSISTSPSSSPSRSPPPLSHHFPPSHHHLHSQISKSAPPHVQLALGTENPSKKKRCRTKFSEEQKGK MLEFSEKLGWRMQREEEGSIQKFCDGIGVSREVFKVWMHNNKSRSSSEIGNEKKINGGGYGFQLLSDINNPHSRNSSTD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 25 | 25 | - | – | |
| PANTHER | 21 | 206 | 186 | 1.1E-68 | – | |
| PANTHER | 21 | 206 | 186 | 1.1E-68 | – | |
| Pfam | 30 | 80 | 51 | 2.0E-26 | ||
| ProSiteProfiles | 32 | 79 | 48 | 26.065 | ||
| TIGRFAM | 32 | 79 | 48 | 5.0E-26 | ||
| MobiDBLite | 95 | 130 | 36 | - | – | |
| Gene3D | 137 | 208 | 72 | 6.9E-29 | – | |
| SUPERFAMILY | 140 | 204 | 65 | 3.09E-15 | ||
| TIGRFAM | 146 | 202 | 57 | 5.1E-26 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi2g1v0303700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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