Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0304600 |
| Transcript ID | LotjaGi2g1v0304600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Sphingoid base hydroxylase 2; TAIR: AT1G14290.1 sphingoid base hydroxylase 2; Swiss-Prot: sp|Q9AST3|SBH2_ARATH Sphinganine C4-monooxygenase 2; TrEMBL-Plants: tr|I3T7X2|I3T7X2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0304600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:77808479..77811631) extracted from Lotus japonicus Gifu genome v1.2.
GCTTAATAAAAAAGTGAAGCGTTTTAACAGACTGACTGACTCAGCGTCAACCCTAACAGCCGCCCTTGTTAGACCACAAC AGAACAACAGATCACATTCAAACACACTCAGCAGCTTCCCCATTTGCCCGGTCAAACTCGACGTCGTTTGGATCATTCCC AAGCCCATAGTTCTATCATCAACCTGGTCCACGGTATCACTAACAATTCATCTTAGCCGTTCATTAAAATCCAACGGTCA AGATCAATCATACCTGTAAAGTAACATCGTACGCCATCACCCTCACACGATCCTCTGATATTTTCCCCTCTGGAAAACCT CGAACCAAATTTCAACGTTCCCCTCTCTCTCTCTCTCTTCTTAAAGGAATCTTCCTTCTCCCCCTCATCACAAACCTACC CATTATTTAATTCCTTCTTTTCTAGCTTCCTTGTTACCAATCAATCATTGGGGTTGGAGGAATTTGAGGAATAAGAGGAC TGAGAGGGTTCAATTTTCAGTTTTTGTAATTTAGGGTTTCCTTTTTCGTCATCGGTTTTCTTGTTTGAATGCGAGTTTTG GGTTTATTGGGTGGTTATTGAATCAAAATCGTGAACAAAATTTGATTTTTTTTGGTGGGGTGTGGGGAAAAATGGATTTG GGGATTTCTGATGAGTTGTTAGGAACTTTTGCCCCTATACTAGTTTACTGGATTTATTCTGGGATTTATGTTGTTCTGGG ATCATTTGCTGAGAATTATAGGTTACACTCTAAGCAGGATGAGGATGAAAAGAATTTGGTTTCTAAGGCTGCTGTTGTTA AAGGAGTTCTCATCCAACAGGCACTTCAGGCTGTGGTTGCAACTCTCTTGTTTGCAGTAAGTTTTGATTTATGTTCTTTT TCCTAGCTTTCCTTTTTTATGGATTGATTTTTCACTGGTAGATACAATAATTGAGGCAACTTTTTATATATTTCCAAAAC AGCTCTTTCAGAGGTTTAATGGATCCTTATGTCTTATTAAGGAAATTTATACATCAAAGGAAGTGTTTTCAATATCTTTC TTTTGGTTGTATTTTTACATCATACTTAATCCTCATTTGTGATTACTATGTATGCTTTGCCTAGCTGGTTAGTGCTCAGA TCAAAATATGGGTTATTTAAGGATATTCTGCTGTTGCACTTTACTACTCAACCCACTACTATAGGTTGAGTCATTCACTT CCTGTAGATGATTGAATTGTTTTTGAGCCTACATGTTTATCATAGGCTACTTCATAAGGGAGAGGTGTTGCTTTAGATAC TTGAGTGGATTATGTTATACTCACGTCTTAGCGCGGTAATATGTTATGAACACAAAATAAGGCCCTTTCCCTCAAAAAGG GAAACAAAAGCACAGATGTCCAGTGCAGTGTTGAGTCCAACTGTCCAAAGTTGCTACAAGTGGTTCTGCCTTTCTGATAA GTAGGAAAAAAAATGTGAATTGTTACCAACATTGACTTCTCTGAATCAATTTAGAGGTTCACAATTATGAGCTGTAGAGT GTTGTCTTGCTAAATCTTGTATAATGTGGAATTCATTGAATCTACTTGTACTTTTTGCGTTTAGGGTGTTTGATTATTGA AAAATTATGATTGGATCTGGATATCAAAATTGTAATTGAGTTTTGTTATTTTGTAGGTCGCAGGAAGTGATAGCCAGAAT CCCGGCAGTCAGAATGCTTCTCTCCTTGTGTCATTAAGACAATTTGTAACTGCTATGCTTGTAATGGACACATGGCAATA CTTTTTGCATAGATACATGCACCAGAACAAGTTCCTATACAAACATATCCACTCTCAACATCACAGACTCATTGTACCCT ATTCGTTCGGAGCTCTGTACAATCATCCTGTGGAGGGGCTTCTTAATGACACTGTGGGCGGGGCTTTATCTTTCCTCATC TCCGGAATGAGTGCTCGGGCATCCATCTTCTTCTTCTCCTTTGCCACGATTAAGACTGTGGATGATCACTGTGGGTTGTG GCTCCCTGGGAACCTCTTCCAAATGTTTTTCCAAAACAATTGTGCTTATCATGATGTACACCATCAGCTCTATGGCAACA AGTACAACTTCTCACAGCCATTCTTTGTTATGTGGGATCGAATCTTGGGTACCTACATGCCATACAGATTGGAGAAGAGG GAGGGTGGGGGTTTTGAATCTAGACCTTGTAAAGATTACAAGGATGAGTAGCTTTTTTGCTTGGTGAGCATTCTTTATGT GTACTACTAGTATTGTTTTACCTTCTTATGAGCAACACTGCCGGAGTGATCACGTCTGTATATACGTATGATGTGTCCTA TTCTATATTTTTCTTTCCCTTCTGTCCATACTAGATAGAATAAATAATGGAAATTGCGGGGAAACCTATCAAGTTGTGAT TTTCACCCTTGTATTGATGGCTACTATAGACATACCTTTTACCCCTTTTTACACTGTTTAACTCTCTTAAGCATGCAACT TTTGATATCCTAATACTTTATTTGTCTTGACAACTTTGAATTGTCAAATTATGTGAAGCTACGGTTGTCAAATGATTGTT GTATCTGTAAATAGACTGGCATCTAATCATGTACTGCGTGGAGCCTGAACTATTTATGATGGAATGAGATTGGTGTATGT ATCCATTAACTCTTTGTACTCTAGTGTGGACTTTGGTTGTTTGTGGGGAAGCTGTGTTATGTGATGAGGATGAAAATGTC GAAAGTGCTACGGCTTCTCCTTTCTCAAGTAATTGAGCTGCATGAGGCTGTTGGCGCAATTTTTTAAAATTGAAGTGTGT TTTCTTTCTTTCTCTGAGATCTAAACAGAGGCACCCCTGTGAAAATGAGATTCAGAAAAGTTTCTCAAGTACATAGAAAA TATCTACACTGCGTTTGGATACGGATAAAGAATTTGAAGGAGGTACTACATTTCTTGACTGTAAAAAGACAAATGTATGT TTGTATTGCCATTGAACTCAATATTTGATCCATGCTTGAGTCAACATAACAAAATCTTGTTTCTCTATTGATGCATTGAG ATTTGAGATGTGTGTTATCCCGTTTGTGCTGAAACCAACACTTATTTCAAACGTTTTATTTGGATATTATGCGCATTCTT TTTTATGATGGCATAACAGAAATGGACAGTGGT
CDS sequence (LotjaGi2g1v0304600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATTTGGGGATTTCTGATGAGTTGTTAGGAACTTTTGCCCCTATACTAGTTTACTGGATTTATTCTGGGATTTATGT TGTTCTGGGATCATTTGCTGAGAATTATAGGTTACACTCTAAGCAGGATGAGGATGAAAAGAATTTGGTTTCTAAGGCTG CTGTTGTTAAAGGAGTTCTCATCCAACAGGCACTTCAGGCTGTGGTTGCAACTCTCTTGTTTGCAGTCGCAGGAAGTGAT AGCCAGAATCCCGGCAGTCAGAATGCTTCTCTCCTTGTGTCATTAAGACAATTTGTAACTGCTATGCTTGTAATGGACAC ATGGCAATACTTTTTGCATAGATACATGCACCAGAACAAGTTCCTATACAAACATATCCACTCTCAACATCACAGACTCA TTGTACCCTATTCGTTCGGAGCTCTGTACAATCATCCTGTGGAGGGGCTTCTTAATGACACTGTGGGCGGGGCTTTATCT TTCCTCATCTCCGGAATGAGTGCTCGGGCATCCATCTTCTTCTTCTCCTTTGCCACGATTAAGACTGTGGATGATCACTG TGGGTTGTGGCTCCCTGGGAACCTCTTCCAAATGTTTTTCCAAAACAATTGTGCTTATCATGATGTACACCATCAGCTCT ATGGCAACAAGTACAACTTCTCACAGCCATTCTTTGTTATGTGGGATCGAATCTTGGGTACCTACATGCCATACAGATTG GAGAAGAGGGAGGGTGGGGGTTTTGAATCTAGACCTTGTAAAGATTACAAGGATGAGTAG
Protein sequence (LotjaGi2g1v0304600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDLGISDELLGTFAPILVYWIYSGIYVVLGSFAENYRLHSKQDEDEKNLVSKAAVVKGVLIQQALQAVVATLLFAVAGSD SQNPGSQNASLLVSLRQFVTAMLVMDTWQYFLHRYMHQNKFLYKHIHSQHHRLIVPYSFGALYNHPVEGLLNDTVGGALS FLISGMSARASIFFFSFATIKTVDDHCGLWLPGNLFQMFFQNNCAYHDVHHQLYGNKYNFSQPFFVMWDRILGTYMPYRL EKREGGGFESRPCKDYKDE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 11 | 11 | - | – | |
| PANTHER | 5 | 257 | 253 | 5.1E-140 | – | |
| PANTHER | 5 | 257 | 253 | 5.1E-140 | – | |
| TMHMM | 10 | 32 | 23 | - | – | |
| Phobius | 12 | 33 | 22 | - | – | |
| Phobius | 34 | 53 | 20 | - | – | |
| Phobius | 54 | 77 | 24 | - | – | |
| Phobius | 78 | 88 | 11 | - | – | |
| Phobius | 89 | 112 | 24 | - | – | |
| Pfam | 98 | 234 | 137 | 1.5E-25 | ||
| Phobius | 113 | 259 | 147 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Iron ion binding | Interacting selectively and non-covalently with iron (Fe) ions. | ||
| Biological process | Lipid biosynthetic process | The chemical reactions and pathways resulting in the formation of lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. | ||
| Molecular function | Oxidoreductase activity | Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. | ||
| Biological process | Oxidation-reduction process | A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. |
Expression pattern of LotjaGi2g1v0304600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…