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Field | Value |
---|---|
Gene ID | LotjaGi2g1v0305600 |
Transcript ID | LotjaGi2g1v0305600.1 |
Related isoforms 2 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Ran guanine nucleotide release factor-like protein; TAIR: AT1G69680.1 ran guanine nucleotide release factor, putative (Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein); Swiss-Prot: sp|Q54ML6|MOG1_DICDI Probable ran guanine nucleotide release factor; TrEMBL-Plants: tr|G7KCJ8|G7KCJ8_MEDTR Ran guanine nucleotide release factor-like protein; Found in the gene: LotjaGi2g1v0305600 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:77884048..77891439) extracted from Lotus japonicus Gifu genome v1.2.
CTTAAATAAATATAAAGAAGGAGCTTAAATTTGACGCAAACTAAAAAAGAAAAAGCTTATATATAAAGCAGTACGTTGAA GCTACAGAAGAAACCAAACCAGAGCCTTCTTCTTCTTCCATTCTCACTCTCGCTCACTTCGATTTCTCTCAGTCTCAGTC TCAGTCTCAGGTATTCATATTTCTTCTGTATTCCCCACTACATTTTCAACAGGGGTTTCAAATTCGCAAACTTTTGAATT AACTCTAGCTTAACCCCAAACTGTGTTTAACTTGTCTTTCTTCTTGTTCGTCAGTTGATTATCGTTCAAGAAACCAAAAA AATCTTCAAAAAGCATCCATTTTTGGGGTTTTTATTGTAAGTTCATGTGAATTGCTAACATGGGTAGGTGCTGATTTTGT GTTTTCATGTGAACCAAAAAGAAAAACACGCTCCTTCTCTTCTCTCACCACGAAAAACACGCTTTGTTCTCTCCCTCTGT TCTGTACACGCTCTGCTCTCTCCCTTTGTTCTCTCACTCTCAGTCTCACGCCTCCGCCTGTCCGCCAGCCGCCTCCGGCC TCCCCCAGTCGCCAGTCCCCCTGCTCCTTGCTCCTGCAGTCCTGCCTCTGCCTCAATCAAAACTCAAAAGGTAATGCTCA CTTGAAGCTCTCACTCTCAGTCACTCAAAGGGTTTGGGATTGGGACTTTGGATTCTTGTTCTAGGGTTTGAGAAAATTGA AATTGATATGGGTTTTCTGAATTCTTGTTTTAGGGTTTGAGGAAATTGAAATTGATATGCGGAATTTGGAAACTGAAATT GATATGTGGAAAAGGGTTTTTTGAATTCTTGTTCTAGGGTTTAAGAAAATTGAAATTGACATGTGGAAACTGAAATTGAT ATGTGGAAAAGGGTTTTCAGAATTCTTGTTGGACATCTAATGATAGTTGTCAAGGTAATTGACACTGTCCAATTCAGATC ATGGCTTTGGTTACGAGACAAATCAAAGGAATTCTGTTGCTCTTTTTATGATTGACAAATACAACCTGTTTTTGCAATTA ATTCACTTTGATTTTGATTTGAGGCCGTGGGACCTTGCTGATATGGTAGAGGATAGTCCATTTTCTCCGATGGTGCTGAA TGGAAATTATATAAGTGGCTTAGAGGATGAGATATCATTTTGTTGTAGCTGGCTGGAGTATTTAATTTTTGTCCAGGACC CAAACTGTTGCTGTTATGTGGCTGTTTGGTGCTATTTAAATCTGTCTGCAACATTGTTATTGCAGCAGTTTGCTCTTTGC TCTGTTTTGTTCTTTTTTACCATGTATTTTTTGGTTTGAAGTACACCTAGTACTTCCTTTAATATAGTTCTTTGCTTATC AAAAAAATCTAATGATAGTTCATTGCTTTTATGTTTAGCCTCACTGATATTTAAAGTCTGGATTCGCCCCTGGTGGTGGT GCTGGAACTGTCCCCAACTCCCCATTTCTTTGTATCGTTGCAGAAATGCCAGGAGATGTTGTTCACCTCCGTCCTTTGTT TGGGGGGGAAATATCAAGCACGTTCCCCAACAGGTTCCAGGTGATTGTTCTCTTTTTTTTTTTGCATTTTCCCAATTTAT TGATGCTTTTGATGTTTTTGTACTGGTACTGTAACTTCAGTTTTGCTGAAATTGAGATTCTGGTGTTTCTTGTAGGATGT GAGCAACATTCGCGATGTCCCGGATCATCAGGTTTGTCCTGCTTTCTATTTGATTATATTGTAGGTTCTGTTTGATCCTT TTGCTAACTTAATTTTTGGGACTTGATGCTTTATGCAGGAGGTGTTTGTGGACCCGAGTCGTGATGAAAGCTTGATCTTT GAGCTTTTAGATTTTAAACATGATGTTGCTGATAATGGAAGTGCTGCATGGTTTTTTCAAGACCTTGCTAGGGAGCAGGA TGCTGAAGGAACTGTGGTATGCAATCATTTCATTTTAGTTTTTCAAGTTGCTGGATTAATGATGTGTGGAACTTAATTGG TATATAGAAACTGGATTATGTTTTCATTATCCTAGGCTGTAGCGATGAATAATTGTAGAATGTTGGGTGGTTCTAACTTC TAAGAGTAGGAATGTTAGGGGCTATGATATTGTCTATCAGTTCCTGATGTTGGTTATTATGATCTTTAACTTTGATGATT GGTACTTGGTAGACTCCATCTCCCCTGTCCTGGTACTATGGCTTGCATGTAGTATTTCTTCCATTTTGTCATGATCTAAG AATCCAAAAGAAGTTAAGTTGTTAAGTGAAGATGCATGAAAAGCTTGTATATTATCCTTAACACGTGCCTCATGCAAGAG CCCCTTGGGATTAAACTGAGTTCAACTTTATATTAAAAGAACGGGAGTGGCAAAGATTGAACTCTAGACCATTTGATCAT AGAAGCTTTGATACCATATCATAAACCAACTATCCTAGAGTAGATAGGTGAAGATAAAGGAATGATTTTTATCCATATCT GTAACACTTTTAATGCCTGAGTTATTTGATATAATTGAGCTATAAAAATACTTCAATTGCTCTACCGTATGTGCAATTGT GCTTGGGTGTATTATCTCATAGCACAGAAGAGCTGGGATTTCTATTGAAGAGGATAACTTTCTTTCAGCTCAGTTGATTT AACGCCTTATTTTCCACAGAACTTTATTGTGTCTCATGATCATCTCTCCACTTCAAATCATTTCAGGTTATTGAGCAGTC TGGAGTTCTTGAAGCACCTGGTTTGACACACAATAATATACCTACTGTTGTAACAACAGCAGTGGGCCAAATGGTAAAGT TTCTACTGTTTTGACTTTGATTTTGTTTACTAAATCATTCTGAGTCGTCCAGATGAGTCAACATAGGATTACATTCACAC ATTGTTCTGATCCTTCTATGGGTTGCCAACTTAGATATTTGCAATCCATCTACATGACTTGTTGTTTTTACAGTCAGAAT TCACAGATTGAGGCTGTGAAAATATGATGTTATAAGTGCAAATGTAATTGACTTAATTAATTTCATGCTTATTTGTTTCT CTTAATCATATTTAGTACATGATTACTTGAGTAGTTTTATTGTGACCTCTTTCTCTTCGCCATTATGGGTAAATTATATC AGTCATTTTAATTTTGGCATGTCAGCGGTGACCTATTCCCTCATACTGGTAATTTGATATCTACCCAGCCTTTGAAAATT TTGCAATAAGTAAGTGCATGTTTCCCTGCCCAATATTCGGAGAACGTGTGCGACGGCATATAGAGTCATGGTGGGAGGGC TGGTTTACAGCTGAAACATAGTTTCTAGCCTGTCATACGACTTTCCTTAGATTTTCACATTTATGTTGATTGGCTTATTG TCTGCATCATATTTCTAGTAAAACTCGCAATATATGCTTGCAATTTTTTATTTTTTTAATATTCTGCTTGTACTGTCAAG AGTCAAGACGAACTTGATTGTCTCTTAGTGGGAACCTTAATTACCACGTTGTTGGTCTATCTCTATCTCTTTCAATATGA AATCATCGGATAACACATTGTATGTCACCAATGAAATATGTAAAATTTATTCTATAGCTCTTGAATGAGACAGGCCGTGT CTCTTCAGGGCTATAAAGATGCAAGTTAGTGTGTGTAAACTTGTTGATCGGAAGCTATTCTTTTTATATTTTATTTGTAG GGGAAGTTTGATGTCTTGTTCATATAGACCTTTTGTAAGATTGTTCTTTATATAGTGTCTGTTTTTTTTACCTTGTGTAA GTACTTTATGCCCTTGCTCTCAATTTTACTCCTCACTCTGTCATCTATAATTACTGCTAGGCAATTTCTAAGGGACGTCA AGGAAGGGAAGCACAAAATATTGTGAAGGTATGTTCTGTTTTGCTTGGCATGTTTTAAACTTATGCCATGCTAATTTGAC ATTATTCCACCTTGACTGGTCTTCAGATCATTACAAAATTGGTTCATCTCTTCAGGTTTATTTGGCAAATTTGCGTCTTA AAGGTGTTGACACTGATGTGCTAATCACTGCATACGAGCCCATTGTTATAAAGTAAGTTTTTGGAATCTCCTTTTCTTGA CTATAAGCTCTTTGGAAAGTTTTCTTGCCTTTTATTGTTTCATCTGTTTCCTGATTGAGTGAGTTGAATCAAATGTTTAA GTTTGATTTGGACACTTCTTTTTTCTTTTTTAAACTTCCTTCTCTTGTCTATATGATAAAACAATGGATCGATGTTTGCT TTAAGCAGATTGAGGTCCACTAAAAATATGAAATACGATCTACATTTCTTTATTTCACTGACTTTATGGTTGCCATGAGT TTGCAAGACATTTAATTTCTATTTTATGCCTGCAGCCCTTTGAGCGAAAGTGCAGACACAGTTGGTGCTGGCCTAGCCGT TCCTGCTGCTCAAGCTGGATGCATGTCCATGGATGAAGTCATTAAACTGGCTGTTACAAACTTCAAGGTTTATGACTGGG GTCTTTTTGGTCCCTGATCCTAGGTGTGCTAGGAGCATGTTGATGCGAAGCTATATGGACTCGGGACTTTCCACATTGCT ACTTGAGTGAAAATTTTGAAGAATAGGTTTCATCCCCATTTTGATCATTCCTGATGAGTTTTTTTTTTTTTTTTTTCTGT AGGCCAGTAGTACTTTGGTTTAGCATTTTCTCTTATTTAATCTAGTAGTTGTGATAGAGACCTAAAATTAGAGTGGGCTT ACTGTTAGTGGGCTTAGTGTTAGTGGGCTTATAGCCTATAAATAAGGGATTACTAGGAGAGTTTAAGCATCTTTTGGGAT CATTAGGTAATTGGGACTTGGGAGAGAGTAGAGCCTCTCGAATGCTCTACAACTTTTGTAATCTTCCTTCTAATTCCTAA TTGGGAATTAGGTTCACTATCAATATTATCCTTTTCAGTTCTTCTGATTTTCTGGGTCCTAACATTTGATAGAGACCTAA AATTAGAGTGGGCTTACTGTTAGTGGGCTTAGTGTTAGTGGGCTTATAGCCTATAAATAAGGGATTACTAGGAGAGTTTA AGCATCTTTTGGGATCATTAGGTAATTGGGACTTGGGAGAGAGTAGAGCCTCTCGAATGCTCTACAACTTTTGTAATCTT CCTTCTAATTCCTAATTGGGAATTAGGTTCACTATCAATATTATCCTTTTCAGTTCTTCTGATTTTCTGGGTCCTAACAT TGGTATCAGAGCACCGATCTAGGTGCTGTGGTAGTCAAATGTTCCCCAGATTCGATAGAAGAGAGGCTTGGGGGTGGCTC ATCAGTGTGGAGCAGTATTGTGAGGCCAGGGAAATACCAGAAGAGGAGAAATTCTCAGAGGCGAAGAGGTCTTTGAGGCG TGATGCTTATTACTGGTGGTATTCCTGGAAAAAACAAAATCAGAGGGCAACATGGATGGATTTTGTGATGGCATTGTTGA GAGAATTCGAACCAGAAGCAGATCTGTACCTGCCAGAACCAGATCAAGATTTAGGGGAGGAAGAAATCCCTAGAACGCAA GAAGGCAGGAAGGAGGAACGAACAGATTTGATTAAAGCCGAAACAGAGGCGAATTCAGTGTTGTTAGCGCCATCAGAGAT CGAGCCACCACCACCAGAGAATTCCGAGAGGGAAGCGTTGCAGGAAGACTCGGAGTTTGCAATGGCGGCGGAGCGAACAA TGGTCATGTCACGGTGTCATTCCGTCGTCGTGGTCGATTTCAGTGGTTGCTCGTTGACCTCAAAACATGAGGACGTAACA GAGGAGGGCATCTTCTTCAAGCGGTTACAGGAAGGTTCTTCAATGGAGAAATTGCAGATTTGCAGCACTCAAGGGAGGAA GAAGGTGCAACCAATCGTTTTGCCCCAAATCAGTGATTTAGGGTTCGATTGGGGGAGACGGCCGCCGCGGAAACCGCCAG ATTCATGTCTCTGCACGGCGGTAAACGCCAATCGACCGCCGGACACGTTCTTTTGCTGGACGGAGGTCTTCAATCAGACC TCTGCTCTTTGCTCTTTGGTGGTTGCCATTCGACTAGAGACTAAGCCACCAGACCGCAGTGGTGGCGGTTCATGCTTCAT CCGCGGCGATTCTTGCATATCGGACTTGGTGGCCAACCGTCCTCCAGCTAAGCCACCGGATTTGGCTGAGACAGCGGTTG TGAGATACTGTAGGCCAGAGTTAGGAGAACGCACAGAGGAAAGGGAGGGAAGCTCGCTCATTCACAAGCCGGTAACCGCT TTACGGCCACCGGCGAAGCCACCGGACTTTGCAGTTCCGGCGGTGGACGCTTGTTCCGTCGTCGCTGGTTGGGTGTGGTT TTTCTGTTGTCTTCACACGCACATGCGTTCATACGAAGCAGAGCAAGGCTGGCTCAGCTAGATTTTTCAGAATTGGGTCA AAGTTTGACCATAAGGCCAAAGCCCATAATGCTACAGAAGGAACGGGCCCAAGAGAAGGGAAAAGCACTCTGTTTTGATT TTTATTTTTGGTTTGTGTTGTATTGGGCCTGGCCCAACTGGTTACAATTGTTGGTCTTTTTGTTCTCTTTTTTCCCACCT TGAGGACAAGGTGGATGTTTAGGGGGAAGTGATGATAGAGACCTAAAATTAGAGTGGGCTTATTGTTAATGGGCTTAGTG TTAGTGGGCTTATAGCCTATAAATAAGGGATTACTAGGAGAGTTTAAGCATCTTTTGGGATCATTAGGTAATTGGGACTT GGGAGAGAGTAGAGCCTCTCGAATGCTCTACAACTTTTGTAATCTTCCTTCTAATTCCTAATTGGGAATTATCTAATTCC TAATTGGGAATTAGGTTCACTATCAATATTATCCCTTTTCAGTTCTTCTGATTTTCTGGGTCCTAACAAGTTGTAATATT GTTAGGGTTGTCAGCTAGTAAATTGAGAGAATATGTTAACTGTTAAGCAATGTCAGTGACTTTTTTTGCTTTATGAAGGT GCTGGATTACAGTTTGTGAATTGTCTTAACCAGTTTGAGTTCTTATAAATGTTCAATCATTGTCCTTCTGAAGAATGTTG GCATCTGTCAATTATGTTCAAATGTTCAATACAATGGATTAGGTCTCACAATTACGCAAGAACCATAGTGGACTTTGTTT TTGGTCAATAGAACCATAGTGGACTAGCTTGCTTCAAGCACTTGTATCTAGAAGCATGGTGGGCTAGCTTGTCCCCTTTG GGAGGTACGTATAAATATAATTATGGGCTTTTTGGGTCTAAAACTATATGTTGAAAACTCTCCAAGGCATGACAAATACC CTGAACCTGAAAAGCCCAATTTGATTAGAAAAGTTAGTAATTGACCTCTTCAATCACAATTATTTGTTTCAAAATATTAT AATTAACAGTAAAGTTTTTCTATTATTCCTCG
CDS sequence (LotjaGi2g1v0305600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCCAGGAGATGTTGTTCACCTCCGTCCTTTGTTTGGGGGGGAAATATCAAGCACGTTCCCCAACAGGTTCCAGGATGT GAGCAACATTCGCGATGTCCCGGATCATCAGGAGGTGTTTGTGGACCCGAGTCGTGATGAAAGCTTGATCTTTGAGCTTT TAGATTTTAAACATGATGTTGCTGATAATGGAAGTGCTGCATGGTTTTTTCAAGACCTTGCTAGGGAGCAGGATGCTGAA GGAACTGTGGTTATTGAGCAGTCTGGAGTTCTTGAAGCACCTGGTTTGACACACAATAATATACCTACTGTTGTAACAAC AGCAGTGGGCCAAATGGCAATTTCTAAGGGACGTCAAGGAAGGGAAGCACAAAATATTGTGAAGGTTTATTTGGCAAATT TGCGTCTTAAAGGTGTTGACACTGATGTGCTAATCACTGCATACGAGCCCATTGTTATAAACCCTTTGAGCGAAAGTGCA GACACAGTTGGTGCTGGCCTAGCCGTTCCTGCTGCTCAAGCTGGATGCATGTCCATGGATGAAGTCATTAAACTGGCTGT TACAAACTTCAAGGTTTATGACTGGGGTCTTTTTGGTCCCTGA
Protein sequence (LotjaGi2g1v0305600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MPGDVVHLRPLFGGEISSTFPNRFQDVSNIRDVPDHQEVFVDPSRDESLIFELLDFKHDVADNGSAAWFFQDLAREQDAE GTVVIEQSGVLEAPGLTHNNIPTVVTTAVGQMAISKGRQGREAQNIVKVYLANLRLKGVDTDVLITAYEPIVINPLSESA DTVGAGLAVPAAQAGCMSMDEVIKLAVTNFKVYDWGLFGP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
Gene3D | 6 | 199 | 194 | 7.8E-40 | ||
PANTHER | 9 | 199 | 191 | 4.4E-65 | ||
SUPERFAMILY | 9 | 199 | 191 | 3.09E-46 | ||
Pfam | 10 | 150 | 141 | 1.4E-37 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0305600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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