Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0305800 |
| Transcript ID | LotjaGi2g1v0305800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | HVA22-like protein; TAIR: AT1G69700.1 HVA22 homologue C; Swiss-Prot: sp|Q9S784|HA22C_ARATH HVA22-like protein c; TrEMBL-Plants: tr|I3SHV4|I3SHV4_LOTJA HVA22-like protein; Found in the gene: LotjaGi2g1v0305800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:77913412..77919212) extracted from Lotus japonicus Gifu genome v1.2.
ATAGAATTTAGACAAGGAACAATCTCCGGTGCCCACTAGGGTGCACTACTTATATCCTGGTCCACCGGTGGACCGGGGGG TAATTTTGACTATTCCCATTCCTTTTATTCTTTTCCTTTTCCTCTTCCTCTTCTTCTTCTTCTTCCTCTTCACCCTTTTC CTTTTTCTCTTCCTCTCACTTCTTTCCAACCAGATTGGAACTTGCTGAGCTAAATCCCAAATTTTAAAAATCAAACAAAG ACGTCTAGAAGAAGAAGTGGAAATCCCAATTTATGGATATGAAATGTTGGTGAGCAATAAAAAATTCATGGATATGAAAA ACCCAGTTCAAGCTCTTGACTATAAAATTAATGATTGAATATCGACCAATACAAACGTAAAATAAAATACAAAATTTGCA AAGAACAGATACCCTGCTGCTATAAACTTCATATAATGAGTGCCAAAAGAAAAAAGCAACTAAAATGCGAATTTAGTATC AATATTTGATGGCAACTTAGAATTTAAAGAGCAATGACAATAAGCAATTTTATAGGAGCATTCAAGTTATTCTCATCAGC CACCACTGCTACATGTACCAATAGCATCGCTCATTCATGATGGCTGACTCCAAAAATCCTCCTCCTTTTCTATTTTACTT ATTTTTGCTTGCCACGGGTACCAAACTACCAATGACCTTAATGTTGCTAGTTCTGCAGCTTCTGTAAATAATCCTATGGA ACCCATTTACTTGGATAGGAGATGGACCCTCTGGCGCCTTCTCTGTTGGCCTTTTTACTGCCTCAGCTTTAAAAGTAATT GCAGAAACGAGTCAACCAAATACACTCAGATCTGATCTTGGAGAGCTCGAACTGCGTCTATACCGATGGATAAGAGAAGC AGATCGGAACTTGGGCTTCACCAATCACCATGTTTTTGTTCTCCTCCTTCTTCTTCATCATCTTCTTACTTAATTCCTCC CTCACCCACCTAAGATCCCAACAAAAATATCCAGATTTGAGAATGCGCTAGATCGGTGAAGACATTGTCATCGTAGGTGT GAAGGACAAGATCCGGTGGTGGCGGCAGTTGTGGCGCCGTGGGTCGAAACGGCGGTGAGCACCACGGTGTGAAGGTTGCA CGGTGGTGGTTTTTTTTCAAGGGTCAGACACGGTGGTGGTATTTCTGGGTTAAGGAAGAGAGAAATTGGTCACGGTGGTA TTACAATTCTACCCTTCTAACACAAATTCAATCCTAACCACTTGATTTAAGAATATTCCTAGATTCTTCCATCCAACGGT CTTAAGCAATGGACCACAGGTGGACCAAAATATAATTGGTCCACCCTAGTGGGCACCACAATCTCCGGCGGCGCCAGGTG ATCACAAATGAGGAAGGTGCTTTATGCCCCCTGTGCAGGCTGGAAGAGGAGTCTACAACACATCTGTTTTACTTATGTCA GGCCACAAACCCAATTTGGTATGAATGCTCTAAGTGGCTAGGAGTTCTATCGTCTCTGGTGCCTTCCCCACGGGAACACT TGCTCCAATTTTCTTCCATTGGCATCACTAAAGCACAAAGGGTGGGGGAGTGTGTTATTTAGATGACAATTGTGTGGACT ATATGGCTACTCCGGAATAAAGTAATCTTTAATGGGACAACATTTGACAGGAATCACGTACTAGAGCTGGCACAATTGAA GGCTTGGCAATGGTTAAGCAGCAAAACAGACGAATTCTCTTATTCTTGGTATGAATGGTTGAGGAACCCAAGCTCTTGTA TTCAAGCACTATGAGGGGAGGGGCGATTGGAGCAAGTTACTTCTATGATTGAACAGGGAGTGAATCCTAAGCTCTACGGT TTTAAAACAGAATACTGTACGAGTGCAAGGCCATATGCAATGCATGGTATGTTGTACAGTAGGATGGAGGGACTTATAAG GAGGTTTGGCATGTAATCCCCTTTGGATTACATTAATTTTATATTCCTTCATGTATCTTTTGCTTTTCTTCCTTCTTTAT CTTCTTGATGGTACTAGCTCTTTCTAGTTCATTGTTCATTGTATTTGGGTTAGCACTCCTTGTGCTAAAGTGAATGCAAT ATTTTGGCTTATCAAAAAAAAAACGATACATTAGCTTCTCTAGAAACATAATAAAGACAAACTTTCCAATTACGAGACAA GGTGTGGTGAATCTCAAAAAGGTCACTCACATGTGGGTGGAAGTAGAAAGTATCTCATTTAATAAGTTAACAATCTGTTT CACCCACAACATTTCTAAAGTTGATGTCCCATTATAAATCATTAAATCTAGACCATAAATGTTGGAAATATTTTTGAGGA TTTGGCGCTATGTTTGCTCCAATAAGCGCGTAAGTAAATGTGTGAACAAGTACAACACAACACAACACAACACAAGGAAA AAACATACATACATCAGATTTCGGTGCCTCTTTAGTCGTGTGAGTGAGGTGGTACGTTGATCTAAGATTCTCCTTTTTTT CTTTGTTTCTAGGGAAGGGTCCCTTTTTGTCCAACACCTCTCATTTTCTTTCACTCCTTTTCACACTCCGCTGTTCTCCA ATGTTCCTGCGTTAAACCCTAGTATTTCTCACTTCTACACTCCCACAAACACCAATCACCATAGCAGCATTTGCGAAATA TGGGTCATTCTGACAACAATTTTCTCCAAGTCATCGCCAAGAACTTCGATGTTCTTGCTCTGTATGTTTTTTTTTTCACT CTATCTATGCTTTAATGGCATTACATGATGCAGATTCAGTTTTTTTAACTGCTTTTTTTTGTTGTATTTTACACTGAATC ATGTTGTTTTGCTTTTGCTTTCAGGCCCTTGGTCACCCTTGTTTACCCCTTGTAAGTGTCTATGCTTTTATTCTGTTATT TTATTTTGGTATTAGTGTATTACAGTGGAATGATTTGGTTGTGAGGATTTTTGTGACAGATATGCTTCAATCAAGGCCAT AGAGACCAGGTCCATCACTGATGACCAACAATGGCTCACTTATTGGGTTCTATACTCTATGATCACACTCTTTGAGCTCA CATTTGCCAAAGTTCTTGAAGTGTAAGTTCAATTTTGAAAATGGGACCTTTCTTTAGCAACATTGTCTTGCTATTAAATT TTGTGAAGTTTCTGTTGCTAATTTCGGGCTTCTGATTTGGTCTTATCCTAAGTTGATACTTGGTGATTGTGTTGCTAATT TCAGGCTTGCAATTTGGCCATATGCCAAGTTGATACTGAGTTGCTGGTTGGTTCTTCCACACTTTAATGGGGCGGCACAT GTTTATAGGTACTACGTTAGACCATTCTACATGAACCCACAAATGCCACAATTGCCACTGTTGCCCCAAATGCCACAAAT GCCAGGAACTTCTCATATGTGGTATGTTCCTCGGAAGAACATATTTAGCAAGCGGGATGATGTTCTTTATGCTGCTGAGA GATACATGGAAGAACATGGAACAGAAGAGTTTCAAAGACTCATAACCAAGGTATATATACTTATTGCCCTATTTTTCTGG TGAAGGGTATTCAGAATTCCAAAGTTAATCTTACGAAATTTGGTAAAGTTAAGCACTGATACTATTTGGATTGCTTAATG TTATAGCAAAAGTTAATGTAGCATCTAATTCAAACCTTTCCTCCCATTCCGCCATGGATTGATGGATGATTTAAACTATA TAAAACCTATACATTTAATTTTGCATTAAGAATAATTCCTAGGAGGACTGGAAACATAATTGCACCTTATATTGAAAAGA AGTGGAAGATTTGTGTATTTAGTTCACATATTGATCAGGTAAAATGCAATCAATCACTCTAAGTTGAGTGTAACTCTAAC TTTGCGGTGGTTATGGTGGTGGTGCTCCATGCCTTGTGGTTGCTCCTCTGTCACTCAAGTTACCAAGTGTATAGTAGGGT TTAATTTAGAAAGCATGATTACGGAGTACCATGGTTCGTTTTGCCTCTATTAATACAAAAAGAGGTTGACGTCGCTGGAG CTCCTAGGCGCAATGGAGGTTGCGGCGAGCCCTGATTGTCGGGGTCGTGCTTACCTCCAGCAGTTGAGGGGTCTTGTGCA CCTGAGCTCTATCACCTATTTGTTCTACCTCTAGGCGGTGTTTGGTCGTAGAACAGAGAGTCATTAACCTCGGGAGATTT GAGTAGAAAAGACTTTGGGAATGGTTCAAACGTTTCAGTGGAAGTTGGTCTTTTATGATAAGTCAGCAAATGTTCCTTTG AAGAAGTCGGCAACAAGAACTTGTTTAAGGTGTTACCTGAAAGGGACTACGCTAGCTATGTAACTGAGTTGTCCTACATT GGTCGTAAAGCGGCCATGATACATGGTGTTAACCTGGTACCAGAAAAGTTGTCTTGTTTGTCTTACGCAGGTGGTGTCCT GACCGTGGTTCTAGCCAGGTACCACAACAACTGTATCTGAATTGTCATATGTTGGTGGTGAGTTGTCCATGATACATGAT GTTGACCTTGTATCAGAAAGGATGTATATAGATCATCCTAAGCAGGTTGTAAGTTGACCCAAGTAAAATCCCCTAGCTTT GGCCTTAAAGCGGAGTGAGGGCTGAGGTATGAGTGCAAATCGGTCCTTCTACATGGATATACTGGAACAGTAGTCGAACC ACATACTGGCTTTGACCTTCACACAGATTGATGGTCGACGTATGAGTGTGATTCAGCCCTGATATATGGTGTGGAACCTT ATACTGGAACACATATTATATCGATTATTTCACAAATTGTATTTTGATTTTAACGGTTACCAATGCCTGAATTTGAAAAC TGAACTAAAATGAGGAAACAAATAATAAACATACAATGCTGGTACAGATTTAGTTCTTATTGTTATATCTTTATTGGGAG TATCCCATTTTGTAATGCAGTTTTCATGTTATGTGTATGAAATTATGCATATTTTAATCATGAAAAACACTTATAGATTG TTGGTATGCAATTATGCAGGCTGACAGAGAAGCTAGATCAAGGAGGAGTGGCAATCACATGATATTTGATGATGATTATA GATATTAGGTTTATTAACCCATAAACTACTCTGCATTGGCACTTTAACTTTTGTTTATAATGGTATGACTTATGAATTCA GGCATTCTTGGACATTTCTTTTTCACTAGACGTGTTCCATCCATTTTAAGTCATTAATCAAGTTAGTTTATCTATAACGA AAGAGAGAAAAGAACGGAAAATGTTGGGGAATGACGAAAATCATGCCAATTTTAGCATATTTTCCTTCATTTCCACTTCT TCACAAAAGTTTAGAAATGCAACTATTTTTCTCTAATTCTCACTTAACCCTTCCTTCTGACTTCTGATGCTAACTCAGTG GAAGCAGGATGTGAGGTATTAGAGGAATTAAATCCAATGCTTCAATGAATCAATAGTTATGGATTTAATTTCTTCTTATG CTACCTCCAACTCAATCACCTAACAATTGGTAGCAATAGTTATGTAGTTTCAAGCTTCACCAAAATGTTCTTCCAGGAGC TGTGGCCAAAATGATATTTTATAGCAGAAGGCCATGCAATTTTCATGAGATACTATCATATACTCTTAGAATATTATGGG GCTATCATGTGAGTTTCTTTCTAGGGTCAATACATGACCCAATTGATATTGCAACTTAGACAACACCAGTTCAGATTGTA CTCTTGCCAACTTAACAGATTTAAAAGTGCTGCAGGCCACGCTAGAGTTATAACAACTTGCTTTAAGATATAGAAAATAG CAGGGCGTGTCATCTCTCCTAATCAATCTTTGATTAATAAA
CDS sequence (LotjaGi2g1v0305800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTCATTCTGACAACAATTTTCTCCAAGTCATCGCCAAGAACTTCGATGTTCTTGCTCTGCCCTTGGTCACCCTTGT TTACCCCTTATATGCTTCAATCAAGGCCATAGAGACCAGGTCCATCACTGATGACCAACAATGGCTCACTTATTGGGTTC TATACTCTATGATCACACTCTTTGAGCTCACATTTGCCAAAGTTCTTGAAGTGCTTGCAATTTGGCCATATGCCAAGTTG ATACTGAGTTGCTGGTTGGTTCTTCCACACTTTAATGGGGCGGCACATGTTTATAGGTACTACGTTAGACCATTCTACAT GAACCCACAAATGCCACAATTGCCACTGTTGCCCCAAATGCCACAAATGCCAGGAACTTCTCATATGTGGTATGTTCCTC GGAAGAACATATTTAGCAAGCGGGATGATGTTCTTTATGCTGCTGAGAGATACATGGAAGAACATGGAACAGAAGAGTTT CAAAGACTCATAACCAAGGCTGACAGAGAAGCTAGATCAAGGAGGAGTGGCAATCACATGATATTTGATGATGATTATAG ATATTAG
Protein sequence (LotjaGi2g1v0305800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGHSDNNFLQVIAKNFDVLALPLVTLVYPLYASIKAIETRSITDDQQWLTYWVLYSMITLFELTFAKVLEVLAIWPYAKL ILSCWLVLPHFNGAAHVYRYYVRPFYMNPQMPQLPLLPQMPQMPGTSHMWYVPRKNIFSKRDDVLYAAERYMEEHGTEEF QRLITKADREARSRRSGNHMIFDDDYRY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 11 | 11 | - | – | |
| PANTHER | 4 | 188 | 185 | 9.9E-98 | ||
| PANTHER | 4 | 188 | 185 | 9.9E-98 | – | |
| Phobius | 12 | 31 | 20 | - | – | |
| TMHMM | 15 | 37 | 23 | - | – | |
| Pfam | 29 | 105 | 77 | 9.3E-23 | ||
| Phobius | 32 | 51 | 20 | - | – | |
| TMHMM | 49 | 66 | 18 | - | – | |
| Phobius | 52 | 74 | 23 | - | – | |
| TMHMM | 71 | 93 | 23 | - | – | |
| Phobius | 75 | 79 | 5 | - | – | |
| Phobius | 80 | 101 | 22 | - | – | |
| Phobius | 102 | 188 | 87 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0305800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…