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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0306200 |
| Transcript ID | LotjaGi2g1v0306200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Kelch repeat-containing protein; TAIR: AT2G02870.1 Galactose oxidase/kelch repeat superfamily protein; Swiss-Prot: sp|Q8L736|SKI11_ARATH F-box/kelch-repeat protein SKIP11; TrEMBL-Plants: tr|V7CK00|V7CK00_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0306200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:77944350..77949505) extracted from Lotus japonicus Gifu genome v1.2.
AATGATTTAAGCGAGATAAGGCGTGAGTAGAGGACCCTCTTTCAGATTTTGCTCCGAAAACCAAACCTTCTTTTCTTTCA TCTGAGTTGCAGAGAGAGAGAGAGAGAGTGATTGTTCTGTTCTGTTATGTTATGTGAGTAACATGCAAATGAAGAAGAAA ATAATATATATTTTATAGAGAGAGAAAGAGTTGAAGATTGTTTCTCCATTTGAAAATTCCTCTCACATCAAACTGAACCT TTTTCCTGTTTTTATAATCCTGCTGGTGTGTTCCTATCCAACCTTGTAAGTCTCTTACATTGTTAGTTTGTTTCTGGTTT TCTTTGTTTTCAATGTTTCTTTGTGAATGAGATTATTAGTGTTTTACTTTGCTATGTTTTTTTTTATGAGTTATGGAGAT CTAAACTTAGTTTTTATGAGATAATGAATGATGGGTTCTCTTCAAAATCTGAAATTTTTTTGTGGGGCATTGGACTATTG GATTCATTTCTGCATTGGATTGTTCTATTGAGGTTTGTGTTTTGCTGCTTGGGATCTATCTATTTGTAATCAAATTCCAT CTTTGTTCATGCACAGAAGAGAAAAAAAAATTGATTTTGGGATTTGTCTGGGTAATTGGTTGAATGGTTTACGATCTGAA ACCGTGTCTATTTGGTGTTGATTGATTAGAAATCAGTGAAAATTCTTTGATGGGTGTTGTTTGATTTGTGGAAAAGGAGA AGGAATAAAATTGGAACCTGTGAATTGAATTTTTATCAGTTCTGTTTGAACAGGCTCTTGATTTTGTTGAAGGTGGTGGT GGTGTTTTTGTTGGCGCTTTTTTTGTTCTCTGTGGCAGAGACATGTTGGACGGCCGTTCCTGTGTTGTTCCGAGGATGTT TTCTAGCTCTTGCCAGACAGAGAACAACTGGTCTTACATGAAGGACTATTTGCTGGATTTGGATATCAAAAATGGAAAGC GCCCTATGGAAATTGATGCTGAAGGGGAGCCTCAACCGAGGAAATGCACCAAGATGTTAGATTCTTGCCAGGAAGTTGAG ATTGCTCGAGTTTTGTTTCGACAACAATCGCTTCAGGGTAAGGATTCTGTTGTTCCTCAAATGGATTCTGAGCAGGACAA CCAGCTTGATGGTGATTCGATGGATTCTGATGTTCAGCAGCTGCTACATGCTGAAATATTTTTGAGTGCTAGTGACCAGA ATCAACAGCAGCACCAAGCTGGGGATTCATCGGATTCTGGTTCCCTTTTGCCGCGGATGAACCGGGACAGCTCAATAGCC TGCCTCAGCCGCTGTTCGAGGTCCGACTATGGTTCCCTTGCCTCCCTTAACCGGAGTTTCCAGAACATCATCCGGAGTGG GGAGCTCTATAAATGGAGGAGACTAAATGACATCATAGAACACTGGATTTACTTCTCCTGTGCCCTCCTTGAATGGGAAG CCTATGATCCGAATCGCCAGAGGTGGATGCACTTGCCAAGGATGGCTTCTAATGGGTGTTTCATGTTTTCAGACAAGGAA TCTTTAGCTGTAGGGACCGAACTACTTGTGTTCGGGAGGGAGCTGAGGTCCCATGTGATTTACAGATACAGCCTCTTGAC AAACTCATGGTCTTCTGGAATGAGAATGAATTTTCCAAGGTGCTTGTTTGGCTCTGCAAGCCTTGGAGAGATTGCGATTT TAGCCGGTGGGTGTGATTCAGAGGGCCATATTCTTGACTCTGCTGAACTGTACAATTCAGAGTCCCAAACATGGGAAACA CTCCCAAATATGATAAAACCAAGGAAGATGTGTTCTGGAGTGTTTATGGATGGGAAATTCTATGTTATAGGTGGAATTGG GGGAAGTGATTCCAAGCTTCTTACTTGTGGAGAGGAGTATAATTTGCAGACAAGAACATGGACTGAGATTCCCAACATGT CCCCGGGACGGAGTACTCGAGGGTCTGAGATGCCTGCAACAGCTGAGGCACCACCTCTTGTTGCTGTTGTGAATGATGAA TTGTATGCTGCTGATTATGCTGACATGGAGGTTAAGAAATATAACAAGGACAGGAAAGTGTGGTTAACCATTGGGAGGCT GCCGGAACGCGCGGTGTCGATGAATGGTTGGGGACTTGCATTCAGGGCTTGTGGGGATAGGCTCATTGTGATTGGTGGAC CAAGGACTCATGGTGAGGGTTTCATTGAACTCAATTCATGGGTGCCTAGTGAGGGACCTCCACAATGGCGTCTACTAGCT CGAAAACGTTCCGGTAACTTTGTCTATAATTGTGCTGTGATGGGATGCTGAAGCATTATTGACTTCTGAAAGCTACTACA CCTTTTCATGTTTCTTCAAGTCCAATGAGTTGTTGCACAACTTTGATTCATGATCATCATCCATTGACACAGGATTCTTG CTAATTGGTATTTCCCTAATTTCTCTTTATTATACTTTTCCTTTTGAAGGTTGGGGGAAAGAGATTCAGATATTACTCAA GATTAGCTGAAAAGTTTTCTGGGGAGGAGCTCTTCAGTCATTTATTTTTGTTTAAATTTTCAATTACTATGTTATTCTGC TGAAATTGGTAACTTCCCCCATTTTCATTGAAATGAAATTTTTCAAAGCTTGGTGTCATGTAGCATAGGAATAGTTTAAA TAATTGAAGTTCCAACACAAATTTAGGATACTGGTGTTGTTGTATGTTTAAGTTTTCCTAAACACACAGCTAGATATTTG ATTTTCATGATCATAAATTTGTTAGCTTGAAGGAATGAAATAACTTTCTGAGAGTTGTTTTTATTAATTTTGGATGATTA TGTATTGATTCCATTTCTCTGCTCCGCAAGTAGTATGTGTAATTGCTGCAGACTTGTTGACCTACTCACCATGATGCAAA ACTGCAGGGATGAGGGAAATTTTCCCATTTTTGAACCGTGCAACCTTCTTTATGGATAACTTGAATTTGCTTTTTTTGCT CAAACAATAAATGGTGATTTGTTTCAAAAGTCATTATTGAACTTGTGGAGGATATATTTTAATTTGTGGCTAAGAGAGTA AGAGCTAAATGCTTAAAACTATAGGGTAAACAGTCTTTTTGTTAGGCATTGATGGAAAGTTGTAGCGCACCATTCAGCCA CATTATTATTTATTATTACTTTGTCGATTTGAGACCCTTCTGCAAAGTTGCAATTTGTAGTCTTCGTAATTGCATGAACC ATTTGCAACTTAAAACCTTAAATTGAAGTGTGCTTACATCTAATTTGTCCTAATCCTATTAAATATATAGTTATTGGATC TTTCTAATTTTGGGTATGTGTTGATGGTCCAGACTATATCTATATAGTCAGAAAACTCACCTTAGACCTGGTATAGCTGA GTTGCTTTAAATATTTGGTTGGGTGGTTGAATCACCATTATTGGGCGTCAAACTCCTTAAACAGCCTTTGTCCTTGCATC ATAACACATATTGCATCATGTCTAATCCTCAACAGTACACAGTTTTTGTTGAGTATGATGCTTGCTTATCAAATAACATG AAGACTCTGTATTTTTCCTATTTTTTCTAACTATGGTATGACATGCTAATGGTGATTTAAATCAATTTTCATATTTTGAC TGACTGCTGAAGAGAGTTAGTTCAAGTAATGTAGTAAAATCCAATTCTGAAATACTGAATATGTTGATCAGTCAAAACCA AGATTTGTAATTTTATACTAAAATTGATTTTGGATATAGAATCAATTGTGAAATGAAACGTCTAAACACCCTAAAATTGA GCGATTAAGCATGTACTCATAATAATTATACCATCAAGCAGCTACCCTTACTATTCTGCTTGACTGGATTTTAGACCCAT AGGTCATCCTTTGGGATCCCATCATAAAATGTATACAGTTTCATTTAACTAAATTTGTTGTGGGATGAATTCAACATACA TAAATCTGTGTTGATATGTATGGTTGACAGAGCAATGAATCTCTCCTTCATGTGGTTACATTTTGCTTTATTTGATATGC TATTGACATGTTGTTTTCACTCTCACTACTTCGAAGTTTTAGTTTTGGTCAAACACACCTCCAAAGTTCAAACGTGGTCC ATTATTGTGTCCGTATCTATTTTCTTTCTAGCTCAACATTACGCATGTGCAAAATATTTTTGCTGCTATGACTCATTCAC AATCTTATCAATTTTAATTTTCATTTCATTTTCATCTTCACTTGTTATTTATCTATCTTTTTTTATTCAATAATATCATT TATCACATTTTTTACTTTATCTCTTTTTTTCCCTCCCTATTCTCTCGTTCCACTTCATTTCCACATAAGAGAGTGTGAAT TATTTCCATCTTTTTAGACTTTCATGTTTCAATCAACTTACTTTGTTTATGTTTGGAACGTCTCTATTGTACACTTTCAT GAGGCATATAAGCCAACAAAATAAAGAGATTGGTCGAGGACTTTTTTTAACTTTTAAACAAACACGTATTTAATACTTAG TGTTTGATTTTCAGTTTAGACATATCATCAAACAATTTCAACAAAAAAAATATATATTTCAATATAACCAACATGAAAGT AACTCTTTACTTCTATTGGATTGATTGTGTTTTCATTGAAGTAGTTAGTATATTTTTATTTTCAGCAAGTTTTTAATTTA AGTTGCTTTTTGTTTTGTTTTTAGTGCTTACAAAATTCAAAAAAAAAAAGTTAAATACAAAATTCAGGCGAGTTCAATTT TTTTTGGGGTACTAGAGACATAGTTTTAATAACGACCAAAACCCTAATGTATCAATTTACATCCCTGGACTAAATTTCTG GCTATATCTATACATTCAAGTTGATCTCAGCTTAAATTTAAACACACACTTAGATGTGATATCATGTCTGGTTTGATAGT GATGGTATCCCTTCTATATCTTAATATTGTTAAAAGAACTATAGCAAGGGCAAGCCCTGTATTGCACTGGTCTAATATGC AAAGGATTTTATAGAACTATTAGTGCATTTATAAGAATCTTAGGGCCCGTTTGGTGACCAGGACAGGATAGGATAAGACA GGATAATAATCATATCCTGTTGTTATCTGTTGTTTGTTGCGCCAGCAGGATATGATAACACTATCCTGTCTCCTATCCTA TCCTGTCAGTCATGTGTAAAAGTTATCCTGAGGGGG
CDS sequence (LotjaGi2g1v0306200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTGGACGGCCGTTCCTGTGTTGTTCCGAGGATGTTTTCTAGCTCTTGCCAGACAGAGAACAACTGGTCTTACATGAA GGACTATTTGCTGGATTTGGATATCAAAAATGGAAAGCGCCCTATGGAAATTGATGCTGAAGGGGAGCCTCAACCGAGGA AATGCACCAAGATGTTAGATTCTTGCCAGGAAGTTGAGATTGCTCGAGTTTTGTTTCGACAACAATCGCTTCAGGGTAAG GATTCTGTTGTTCCTCAAATGGATTCTGAGCAGGACAACCAGCTTGATGGTGATTCGATGGATTCTGATGTTCAGCAGCT GCTACATGCTGAAATATTTTTGAGTGCTAGTGACCAGAATCAACAGCAGCACCAAGCTGGGGATTCATCGGATTCTGGTT CCCTTTTGCCGCGGATGAACCGGGACAGCTCAATAGCCTGCCTCAGCCGCTGTTCGAGGTCCGACTATGGTTCCCTTGCC TCCCTTAACCGGAGTTTCCAGAACATCATCCGGAGTGGGGAGCTCTATAAATGGAGGAGACTAAATGACATCATAGAACA CTGGATTTACTTCTCCTGTGCCCTCCTTGAATGGGAAGCCTATGATCCGAATCGCCAGAGGTGGATGCACTTGCCAAGGA TGGCTTCTAATGGGTGTTTCATGTTTTCAGACAAGGAATCTTTAGCTGTAGGGACCGAACTACTTGTGTTCGGGAGGGAG CTGAGGTCCCATGTGATTTACAGATACAGCCTCTTGACAAACTCATGGTCTTCTGGAATGAGAATGAATTTTCCAAGGTG CTTGTTTGGCTCTGCAAGCCTTGGAGAGATTGCGATTTTAGCCGGTGGGTGTGATTCAGAGGGCCATATTCTTGACTCTG CTGAACTGTACAATTCAGAGTCCCAAACATGGGAAACACTCCCAAATATGATAAAACCAAGGAAGATGTGTTCTGGAGTG TTTATGGATGGGAAATTCTATGTTATAGGTGGAATTGGGGGAAGTGATTCCAAGCTTCTTACTTGTGGAGAGGAGTATAA TTTGCAGACAAGAACATGGACTGAGATTCCCAACATGTCCCCGGGACGGAGTACTCGAGGGTCTGAGATGCCTGCAACAG CTGAGGCACCACCTCTTGTTGCTGTTGTGAATGATGAATTGTATGCTGCTGATTATGCTGACATGGAGGTTAAGAAATAT AACAAGGACAGGAAAGTGTGGTTAACCATTGGGAGGCTGCCGGAACGCGCGGTGTCGATGAATGGTTGGGGACTTGCATT CAGGGCTTGTGGGGATAGGCTCATTGTGATTGGTGGACCAAGGACTCATGGTGAGGGTTTCATTGAACTCAATTCATGGG TGCCTAGTGAGGGACCTCCACAATGGCGTCTACTAGCTCGAAAACGTTCCGGTAACTTTGTCTATAATTGTGCTGTGATG GGATGCTGA
Protein sequence (LotjaGi2g1v0306200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLDGRSCVVPRMFSSSCQTENNWSYMKDYLLDLDIKNGKRPMEIDAEGEPQPRKCTKMLDSCQEVEIARVLFRQQSLQGK DSVVPQMDSEQDNQLDGDSMDSDVQQLLHAEIFLSASDQNQQQHQAGDSSDSGSLLPRMNRDSSIACLSRCSRSDYGSLA SLNRSFQNIIRSGELYKWRRLNDIIEHWIYFSCALLEWEAYDPNRQRWMHLPRMASNGCFMFSDKESLAVGTELLVFGRE LRSHVIYRYSLLTNSWSSGMRMNFPRCLFGSASLGEIAILAGGCDSEGHILDSAELYNSESQTWETLPNMIKPRKMCSGV FMDGKFYVIGGIGGSDSKLLTCGEEYNLQTRTWTEIPNMSPGRSTRGSEMPATAEAPPLVAVVNDELYAADYADMEVKKY NKDRKVWLTIGRLPERAVSMNGWGLAFRACGDRLIVIGGPRTHGEGFIELNSWVPSEGPPQWRLLARKRSGNFVYNCAVM GC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 482 | 482 | 1.9E-225 | – | |
| PANTHER | 1 | 482 | 482 | 1.9E-225 | – | |
| MobiDBLite | 80 | 100 | 21 | - | – | |
| Gene3D | 190 | 474 | 285 | 1.1E-43 | ||
| SUPERFAMILY | 195 | 479 | 285 | 3.92E-47 | ||
| SMART | 233 | 276 | 44 | 2.5 | ||
| Pfam | 265 | 310 | 46 | 4.4E-9 | ||
| SMART | 277 | 324 | 48 | 5.1E-7 | ||
| Pfam | 313 | 360 | 48 | 1.1E-10 | ||
| SMART | 325 | 373 | 49 | 0.62 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi2g1v0306200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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