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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0309900 |
| Transcript ID | LotjaGi2g1v0309900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Thioredoxin; TAIR: AT5G39950.1 thioredoxin 2; Swiss-Prot: sp|Q38879|TRXH2_ARATH Thioredoxin H2; TrEMBL-Plants: tr|I3S341|I3S341_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0309900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:78441148..78442132) extracted from Lotus japonicus Gifu genome v1.2.
CAATACTTTCATGCAACAAGATTGAAACTAGCAAGACCATTCTAAATACAGAGTCTACAAATAAATTTTTGGTTTCAGTC CCCAAAAGGAAGAATCAATTAACATGGGTGCCAACTTATCCAACATGGAGTCTGCTCATGCATCAACAAATTCACCTCAC ATTCTCACCTTCCATTTCACTGCTAAATGGAAGGCTCACCTTGATGCATCTAAAGAAACTAACAAACTGGTATGTTATTA TAGATTTATATCTAAACTAACTTGGAGTCTTTCCTTTTAATTTTTGTTCTTTTTCCTTTTTCCGGGGCTAAAGATGGTGA TCGATTTTACGGCTAAATGGTGCGGACCTTGCAAATCCATGGAGCCAATTATCCAAGAGTTTGTTGCAAAATATACAAAA GTTGAATTCATCAAGATTGATGTGGATGAATTAATGGTATTACTCATTTATTTCATTTCAACATTACTACTCATATTTCT CATAGTCTCCGAGAAACTTAAACTACATGCTCATGCATTTTTAATTGCAAACAGGAGGTTACTCAAGAATTCCAGGTGCA GGCAATGCCAACATTCATATTGATGAAGAAAGACAAAGTTGTTGGCAAGGTGGTGGGAGCAAAAAAAGAAGAACTGCAAA AGCTGATTGAGAAGCATCAAAGCTAATTAAGAGTATGATCTTGCACATGGCCAAAGCTATATAGACCATTAGAAAGGAAC GGGAATAATTCAGGGGAGATTATATATTCTATATCTCCTGTGATACCACATTTTCATGTTGGGGTGTGGTATCTGATGAT ATGTGTAGCTAATTTATGTTGAAATTATTTTACTAGGTTTTTATGTGTGCCAAGCATTTCTTGTGAGTGAAAGAAAAAAA TGTCATCTACTTAGGAGGCCTTAATGCAAGAGATACTCTGTTGTTGATTTCAAAATCATCATACGCTGCCACTTGAATGG TCGGAGTGATAATTTACTTTTTTGT
CDS sequence (LotjaGi2g1v0309900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTGCCAACTTATCCAACATGGAGTCTGCTCATGCATCAACAAATTCACCTCACATTCTCACCTTCCATTTCACTGC TAAATGGAAGGCTCACCTTGATGCATCTAAAGAAACTAACAAACTGATGGTGATCGATTTTACGGCTAAATGGTGCGGAC CTTGCAAATCCATGGAGCCAATTATCCAAGAGTTTGTTGCAAAATATACAAAAGTTGAATTCATCAAGATTGATGTGGAT GAATTAATGGAGGTTACTCAAGAATTCCAGGTGCAGGCAATGCCAACATTCATATTGATGAAGAAAGACAAAGTTGTTGG CAAGGTGGTGGGAGCAAAAAAAGAAGAACTGCAAAAGCTGATTGAGAAGCATCAAAGCTAA
Protein sequence (LotjaGi2g1v0309900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGANLSNMESAHASTNSPHILTFHFTAKWKAHLDASKETNKLMVIDFTAKWCGPCKSMEPIIQEFVAKYTKVEFIKIDVD ELMEVTQEFQVQAMPTFILMKKDKVVGKVVGAKKEELQKLIEKHQS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 125 | 125 | 1.2E-63 | – | |
| ProSiteProfiles | 1 | 126 | 126 | 12.694 | ||
| PANTHER | 1 | 125 | 125 | 1.2E-63 | – | |
| Gene3D | 3 | 126 | 124 | 1.9E-34 | ||
| Pfam | 29 | 122 | 94 | 1.1E-26 | ||
| CDD | 31 | 100 | 70 | 1.19476E-27 | – | |
| SUPERFAMILY | 31 | 125 | 95 | 1.36E-29 | ||
| PRINTS | 43 | 51 | 9 | 2.4E-6 | – | |
| ProSitePatterns | 44 | 62 | 19 | - | ||
| PRINTS | 51 | 60 | 10 | 2.4E-6 | – | |
| PRINTS | 90 | 101 | 12 | 2.4E-6 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Cell redox homeostasis | Any process that maintains the redox environment of a cell or compartment within a cell. |
Expression pattern of LotjaGi2g1v0309900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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