Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0315700 |
| Transcript ID | LotjaGi2g1v0315700.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Methylsterol monooxygenase 2-1; TAIR: AT1G07420.1 sterol 4-alpha-methyl-oxidase 2-1; Swiss-Prot: sp|Q8VWZ8|SMO22_ARATH Methylsterol monooxygenase 2-2; TrEMBL-Plants: tr|V7CH10|V7CH10_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0315700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:79116982..79121069) extracted from Lotus japonicus Gifu genome v1.2.
AGCATGGTTTCAGAAGATTAGGGGACTTGGTGGTTTCCCCCGGAGGAGGATTTGGTGAAGTTGAACATCTATGGGGCCTT CTCGTCATCCTCTGACGTGGTTGCGTGCAGAGGCATTGTCAGGAATCATTTTGGTGCTTTTATTATGGCTTTTGCGAGGA GGTTATGCTCTTGTTCCGCCTTGCATGTTGAGTTATGGAGTATCCTTTACGGTATTTGACTTTTGCACCGACGGGGATTT CAAAGAGTTATTATTGATTCAGATTCAACTTGTTGTCTCCAATTGCTAAATCAGGGATGTGAAGATTGTCATCCGTGCTC GACTCTCGATCATTAACCAGATTCATAGAGCTTTGCATGCTTTCTAACACGCAAAGAGAGAAACTCCTATAAATTGAATT TTCGAGATAAAAAATCAAACAACTATTTTTATCCGATACGACTGATACTCATATGAAACTGTGAATAGTTAAGATACATT ATAAATTTAATCATTTTTACTTTTCATGACTAATAATTAAGACATCAATTTCAATTTTTGTACCAAAAGTGTTTAATTGT TTGTTGTTTCTAAAAGGAGTGAAATCCTATGAAAAATGGTATATTATGAAATGATGATTAGTTAATACAGTCTGGCTTAC CTTGTTGGCTTCTGTGGGGGTGGTGCTGCTGATGCCGTTTTGGCTTTGTTCACCTTTGCCACCATATATCTACGCTTCAC TTCCCTGCATCACTCACTTCACGTTCTCTCTCTCTCTCTCATTGGCATCTCTCTCTGCATCGGCCATGGCGTCCATCATC GAATCTGGTTGGCAGGTAACACTCCTTCGCTTCGTTCTTCGCATTTTCTTGAATTACTACTAGCATCCTTTCATCATCCA CTTCGTTATGCTGCGACTTTTTTGCCAAATTTCTCGCCCTTTTCAAATTCCACGTTTTCTGCGGTAGCAGACGAACGAGA TTACGGTTTATTGTGAGATTTGAGCAATGGTTTTATCTATGTATTTGTTTGATTGCTATGCTTGATGCATTGGATTTAGG AATGAGAAATTTGAATTTGTTGGTGGTATGAAGATTGGAGGAACTAGGTGCTATCACTGTCATCTGTTTACAAGTTGAAT GGTTCTTGCTTATAGATTCTTGTAGATCAGCTGTCTATTCGTTTTTCTACTTCTAGATTTTCAATTTGAAATTGCCATTT CCTTCTTTAGATGCTGGAAATTGAATGCTGAATCAAAATGTACTTGGCATACACTTCAATTGTTGAAATATTTGTGCTAT GCTTAAACCCTCTGTGATGGAACACAAAATTTAGCTTGGGTTTCTGATTCTTACAAGTTCTGTGTAGTAACACTGCCATG AAATCCTGTAGACTGCATAATCACATGTCTACCGTTTTGCGAGAATAGAATTGATGTTTGCTCCTTTTAACTTGTGTGAT TGATTAAATTGTGTTTTTAATTATTTTTTGGTGGTGCAGTACTTGATCACTAATTTCAGCGACTTTCAACTGGCGTGTTT GGGAAGTTTCTTCCTACATGAAAGTGTTTTCTTCTTATCTGGACTTCCTTTTATTTGGCTTGAGAGGGCAGGATGGATGA GCAAGTACAAGATCCAGGTCCGGTGTAGTTGAAATTTGTTGTTTACCGTTAGATTGTATGTTCCACCTTTTTATTCCCAA GATAGTGTTGATTTGTTGTTTGCTTTGACATGATATGCATATACCTTAGCGTACACCTCGTTACATTTGAATTATTCACT TTACCCTGCTTATTGTGATTTGTGGTGCTAAGAACAATGCTATCTGAGATCCCCCTTTTCAATTTCTTTTTCCTCTGTAT GTCGTGTATAGGTGGATGTTCTAATAATGCATTTTAGTGTTGATTTTCACCCTCAATTGGCCATTTCACACAAAAAAGTT TCCCTCGAAAAAGTACAACCGTTATTTTTAATTGAAGGGCCACGTCGCATGACGTGGCTGCAATATTGTAGTTGTGGCAG CTTCTGCAACCGAATCAAGATACATATGGCAGCCGTTCAATTTGGATAACGAATTGCATCTGTTCAGCTCTTTTCTTTAT GAGTCTTGTGCATGATTTATTTGAATAACGTATTGACCGAATCCCGGAGATACCGGAAGGAAATAAAAATTGTTTATCGT TATGTATTTATATAGAGAAAACAAAAGTTACATTTTGTCTGATCTTTTGGTATGCAATCAAATTTTCCTATTATTCCACC ATATGGCTGCTTCCCGGTTTTCTCTCCCTCTCATTCTTAACCCACTTACCATTATTGCTAATGCTTCCTTTCATACAGGC AAAGAATAATAGCTCTGCAGCTCAGGAAAAATGTATTGTTCGCCTGTTGATTTATCATTTTGGTGTCAACCTACCTGTTA TGCTTTTATCATACCCTGTCTTCAAGCACATGGGCATGCGGAGCAGTCTTCCCCTGCCATCCTGGTATTTTCAGGTTCTT TTGAGCTTTCATTATTCTGAAAATAGGATAGGAGTCCATTGTTAGGAGTTTCTCCCTTAAACATCTGGAATGTGTTTCCA TTAAGCTTACTAAGCAAGATTGAAATTTCATTTTGCAGGAATATAGTTCTAACTCAAATAATCTTTTACTTCATTTTGGA AGACTTCATATTCTACTGGGGACATAGGATATTGCACACAAAATGGTTATACAAGCATGTACACAGTGTACATCATGAGT AAGTGTTATGTGGGTTCTGGGACTTTGGTTTTGTTAATATTGATTATCTAAAAACATTATAGAAGTTTTGCTGTATTGTG AAGGTATGCTACCCCGTTTGGACTTACTTCTGAATATGCTCATCCTGCTGAAATTCTTTTCCTTGGGTTTGCTACCATTT TTGGCCCGGCCATTACTGGGCCCCACTTGATGACTCTTTGGCTATGGATGGTTCTGAGAGTCCTAGAGACAGTTGAAGCA CATAGCGGTTACCATTTTCCGTGGAGTCCATCAAACTTCTTTCCATTATATGGGGGGTGAGTATGAAGAAGTTCCTAGTT AATTTATTACACCAGCCATTTGGTTTGTTTCTGTTCTTGCTGTTAAAATCTGTATCCCTCTTTCAGAGCTGATTTCCATG ACTATCATCACCGTTTACTGTACACCAAGTCTGGAAATTACTCGTCAACCTTCACTTACATGGACCGGTAAGTAATGAAC ATATCGTTCTAAGTGATGATTATTATTTTTTGTGATGGTTAGAATCTAAGATGGCTTAACGTAACAGACATTTTAGTGAT TCTTACATGAATATATTATCTATAGGTACAACCAATACAAAAACTTCAGATAATATTCAAATAACTTCAGTATGAGTTTT GATCTGTTATTTTTTTGTTATGCATCCTCAGCTCTTAACTGATTATACCTACAGACAGTTTGATCTTGTAAGAATATTTG GTTATGCCTTGGACTTTGGCTTAGCTTACATGGTTCTTTTTTGTTATGTATTAGGATATTTGGAACTGATGTAGGCTATA GAAAGTTGAAAGCATTGAAGAACACAGGAGTTGAAGACATTAGCAAGAAAAGAAACAATTAGAACAAATTATTGGGAATA TCCAGAATGATTGGAAAGTTGATTTTGAACTTAAGGGCAAATGTTCGTCCTATCATCGCCTTTATGTGTTCTTGTGTATT TGGTTGTAGCTAGTCTTATTGACAAACTGCTGATGGCTTTTTGTGGACATTTATGCCCTGTTATTAAAAAAAATTGAGAC TTTGTAAGTTTTGTGGTTTCAATTTTGGGATAGTTCCCTTACTCATTCGAATACCCTATTTTTTCCCCTTTTTCGTTTAC TGTTATTTGTTTAATATAAACCCCCTTGAATTGAAAGGAGCCTAACTGCCTAAGACTCAAGAGACGATTCAGATAGAGCA GAGAACTAAGGATCCACAGAAAATCCAGGATAAATTGATATCTGTTCCTAAAATTAAAGATCAGGCTATAGTTGCAGACA GCATATATCATTTTTTTTTCTTTTCCAGTTTGTATTCCCTTCAAGCTTCAAGCTGAAGTTTGGAATAATGCACCAAAATT TTCTTTCA
CDS sequence (LotjaGi2g1v0315700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCCGTTTTGGCTTTGTTCACCTTTGCCACCATATATCTACGCTTCACTTCCCTGCATCACTCACTTCACGTTCTCTCT CTCTCTCTCATTGGCATCTCTCTCTGCATCGGCCATGGCGTCCATCATCGAATCTGGTTGGCAGTACTTGATCACTAATT TCAGCGACTTTCAACTGGCGTGTTTGGGAAGTTTCTTCCTACATGAAAGTGTTTTCTTCTTATCTGGACTTCCTTTTATT TGGCTTGAGAGGGCAGGATGGATGAGCAAGTACAAGATCCAGGCAAAGAATAATAGCTCTGCAGCTCAGGAAAAATGTAT TGTTCGCCTGTTGATTTATCATTTTGGTGTCAACCTACCTGTTATGCTTTTATCATACCCTGTCTTCAAGCACATGGGCA TGCGGAGCAGTCTTCCCCTGCCATCCTGGAATATAGTTCTAACTCAAATAATCTTTTACTTCATTTTGGAAGACTTCATA TTCTACTGGGGACATAGGATATTGCACACAAAATGGTTATACAAGCATGTACACAGTGTACATCATGAGTATGCTACCCC GTTTGGACTTACTTCTGAATATGCTCATCCTGCTGAAATTCTTTTCCTTGGGTTTGCTACCATTTTTGGCCCGGCCATTA CTGGGCCCCACTTGATGACTCTTTGGCTATGGATGGTTCTGAGAGTCCTAGAGACAGTTGAAGCACATAGCGGTTACCAT TTTCCGTGGAGTCCATCAAACTTCTTTCCATTATATGGGGGAGCTGATTTCCATGACTATCATCACCGTTTACTGTACAC CAAGTCTGGAAATTACTCGTCAACCTTCACTTACATGGACCGGATATTTGGAACTGATGTAGGCTATAGAAAGTTGAAAG CATTGAAGAACACAGGAGTTGAAGACATTAGCAAGAAAAGAAACAATTAG
Protein sequence (LotjaGi2g1v0315700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MPFWLCSPLPPYIYASLPCITHFTFSLSLSLASLSASAMASIIESGWQYLITNFSDFQLACLGSFFLHESVFFLSGLPFI WLERAGWMSKYKIQAKNNSSAAQEKCIVRLLIYHFGVNLPVMLLSYPVFKHMGMRSSLPLPSWNIVLTQIIFYFILEDFI FYWGHRILHTKWLYKHVHSVHHEYATPFGLTSEYAHPAEILFLGFATIFGPAITGPHLMTLWLWMVLRVLETVEAHSGYH FPWSPSNFFPLYGGADFHDYHHRLLYTKSGNYSSTFTYMDRIFGTDVGYRKLKALKNTGVEDISKKRNN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 11 | 11 | - | – | |
| Phobius | 12 | 36 | 25 | - | – | |
| PANTHER | 37 | 298 | 262 | 1.3E-154 | – | |
| PANTHER | 37 | 298 | 262 | 1.3E-154 | – | |
| Phobius | 37 | 56 | 20 | - | – | |
| Phobius | 57 | 81 | 25 | - | – | |
| TMHMM | 60 | 82 | 23 | - | – | |
| Phobius | 82 | 109 | 28 | - | – | |
| TMHMM | 106 | 128 | 23 | - | – | |
| Phobius | 110 | 129 | 20 | - | – | |
| Phobius | 130 | 140 | 11 | - | – | |
| Phobius | 141 | 163 | 23 | - | – | |
| TMHMM | 143 | 165 | 23 | - | – | |
| Pfam | 151 | 285 | 135 | 3.2E-29 | ||
| Phobius | 164 | 199 | 36 | - | – | |
| TMHMM | 200 | 222 | 23 | - | – | |
| Phobius | 200 | 224 | 25 | - | – | |
| Phobius | 225 | 309 | 85 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Iron ion binding | Interacting selectively and non-covalently with iron (Fe) ions. | ||
| Biological process | Lipid biosynthetic process | The chemical reactions and pathways resulting in the formation of lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. | ||
| Molecular function | Oxidoreductase activity | Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. | ||
| Biological process | Oxidation-reduction process | A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. |
Expression pattern of LotjaGi2g1v0315700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…