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Field | Value |
---|---|
Gene ID | LotjaGi2g1v0315700 |
Transcript ID | LotjaGi2g1v0315700.2 |
Related isoforms 2 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Methylsterol monooxygenase 2-1; TAIR: AT1G07420.1 sterol 4-alpha-methyl-oxidase 2-1; Swiss-Prot: sp|Q8VWZ8|SMO22_ARATH Methylsterol monooxygenase 2-2; TrEMBL-Plants: tr|V7CKP9|V7CKP9_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0315700 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:79117205..79119622) extracted from Lotus japonicus Gifu genome v1.2.
ATTGTGTTTTTAATTATTTTTTGGTGGTGCAGTACTTGATCACTAATTTCAGCGACTTTCAACTGGCGTGTTTGGGAAGT TTCTTCCTACATGAAAGTGTTTTCTTCTTATCTGGACTTCCTTTTATTTGGCTTGAGAGGGCAGGATGGATGAGCAAGTA CAAGATCCAGGTCCGGTGTAGTTGAAATTTGTTGTTTACCGTTAGATTGTATGTTCCACCTTTTTATTCCCAAGATAGTG TTGATTTGTTGTTTGCTTTGACATGATATGCATATACCTTAGCGTACACCTCGTTACATTTGAATTATTCACTTTACCCT GCTTATTGTGATTTGTGGTGCTAAGAACAATGCTATCTGAGATCCCCCTTTTCAATTTCTTTTTCCTCTGTATGTCGTGT ATAGGTGGATGTTCTAATAATGCATTTTAGTGTTGATTTTCACCCTCAATTGGCCATTTCACACAAAAAAGTTTCCCTCG AAAAAGTACAACCGTTATTTTTAATTGAAGGGCCACGTCGCATGACGTGGCTGCAATATTGTAGTTGTGGCAGCTTCTGC AACCGAATCAAGATACATATGGCAGCCGTTCAATTTGGATAACGAATTGCATCTGTTCAGCTCTTTTCTTTATGAGTCTT GTGCATGATTTATTTGAATAACGTATTGACCGAATCCCGGAGATACCGGAAGGAAATAAAAATTGTTTATCGTTATGTAT TTATATAGAGAAAACAAAAGTTACATTTTGTCTGATCTTTTGGTATGCAATCAAATTTTCCTATTATTCCACCATATGGC TGCTTCCCGGTTTTCTCTCCCTCTCATTCTTAACCCACTTACCATTATTGCTAATGCTTCCTTTCATACAGGCAAAGAAT AATAGCTCTGCAGCTCAGGAAAAATGTATTGTTCGCCTGTTGATTTATCATTTTGGTGTCAACCTACCTGTTATGCTTTT ATCATACCCTGTCTTCAAGCACATGGGCATGCGGAGCAGTCTTCCCCTGCCATCCTGGTATTTTCAGGTTCTTTTGAGCT TTCATTATTCTGAAAATAGGATAGGAGTCCATTGTTAGGAGTTTCTCCCTTAAACATCTGGAATGTGTTTCCATTAAGCT TACTAAGCAAGATTGAAATTTCATTTTGCAGGAATATAGTTCTAACTCAAATAATCTTTTACTTCATTTTGGAAGACTTC ATATTCTACTGGGGACATAGGATATTGCACACAAAATGGTTATACAAGCATGTACACAGTGTACATCATGAGTAAGTGTT ATGTGGGTTCTGGGACTTTGGTTTTGTTAATATTGATTATCTAAAAACATTATAGAAGTTTTGCTGTATTGTGAAGGTAT GCTACCCCGTTTGGACTTACTTCTGAATATGCTCATCCTGCTGAAATTCTTTTCCTTGGGTTTGCTACCATTTTTGGCCC GGCCATTACTGGGCCCCACTTGATGACTCTTTGGCTATGGATGGTTCTGAGAGTCCTAGAGACAGTTGAAGCACATAGCG GTTACCATTTTCCGTGGAGTCCATCAAACTTCTTTCCATTATATGGGGGGTGAGTATGAAGAAGTTCCTAGTTAATTTAT TACACCAGCCATTTGGTTTGTTTCTGTTCTTGCTGTTAAAATCTGTATCCCTCTTTCAGAGCTGATTTCCATGACTATCA TCACCGTTTACTGTACACCAAGTCTGGAAATTACTCGTCAACCTTCACTTACATGGACCGGTAAGTAATGAACATATCGT TCTAAGTGATGATTATTATTTTTTGTGATGGTTAGAATCTAAGATGGCTTAACGTAACAGACATTTTAGTGATTCTTACA TGAATATATTATCTATAGGTACAACCAATACAAAAACTTCAGATAATATTCAAATAACTTCAGTATGAGTTTTGATCTGT TATTTTTTTGTTATGCATCCTCAGCTCTTAACTGATTATACCTACAGACAGTTTGATCTTGTAAGAATATTTGGTTATGC CTTGGACTTTGGCTTAGCTTACATGGTTCTTTTTTGTTATGTATTAGGATATTTGGAACTGATGTAGGCTATAGAAAGTT GAAAGCATTGAAGAACACAGGAGTTGAAGACATTAGCAAGAAAAGAAACAATTAGAACAAATTATTGGGAATATCCAGAA TGATTGGAAAGTTGATTTTGAACTTAAGGGCAAATGTTCGTCCTATCATCGCCTTTATGTGTTCTTGTGTATTTGGTTGT AGCTAGTCTTATTGACAAACTGCTGATGGCTTTTTGTGGACATTTATGCCCTGTTATTAAAAAAAATTGAGACTTTGTAA GTTTTGTGGTTTCAATTTTGGGATAGTTCCCTTACTCATTCGAATACCCTATTTTTTCCCCTTTTTCGTTTACTGTTATT TGTTTAATATAAACCCCC
CDS sequence (LotjaGi2g1v0315700.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATGAGCAAGTACAAGATCCAGGTCCGGCAAAGAATAATAGCTCTGCAGCTCAGGAAAAATGTATTGTTCGCCTGTT GATTTATCATTTTGGTGTCAACCTACCTGTTATGCTTTTATCATACCCTGTCTTCAAGCACATGGGCATGCGGAGCAGTC TTCCCCTGCCATCCTGGAATATAGTTCTAACTCAAATAATCTTTTACTTCATTTTGGAAGACTTCATATTCTACTGGGGA CATAGGATATTGCACACAAAATGGTTATACAAGCATGTACACAGTGTACATCATGAGTATGCTACCCCGTTTGGACTTAC TTCTGAATATGCTCATCCTGCTGAAATTCTTTTCCTTGGGTTTGCTACCATTTTTGGCCCGGCCATTACTGGGCCCCACT TGATGACTCTTTGGCTATGGATGGTTCTGAGAGTCCTAGAGACAGTTGAAGCACATAGCGGTTACCATTTTCCGTGGAGT CCATCAAACTTCTTTCCATTATATGGGGGAGCTGATTTCCATGACTATCATCACCGTTTACTGTACACCAAGTCTGGAAA TTACTCGTCAACCTTCACTTACATGGACCGGATATTTGGAACTGATGTAGGCTATAGAAAGTTGAAAGCATTGAAGAACA CAGGAGTTGAAGACATTAGCAAGAAAAGAAACAATTAG
Protein sequence (LotjaGi2g1v0315700.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDEQVQDPGPAKNNSSAAQEKCIVRLLIYHFGVNLPVMLLSYPVFKHMGMRSSLPLPSWNIVLTQIIFYFILEDFIFYWG HRILHTKWLYKHVHSVHHEYATPFGLTSEYAHPAEILFLGFATIFGPAITGPHLMTLWLWMVLRVLETVEAHSGYHFPWS PSNFFPLYGGADFHDYHHRLLYTKSGNYSSTFTYMDRIFGTDVGYRKLKALKNTGVEDISKKRNN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
Phobius | 1 | 25 | 25 | - | – | |
PANTHER | 12 | 214 | 203 | 1.6E-130 | – | |
PANTHER | 12 | 214 | 203 | 1.6E-130 | – | |
TMHMM | 22 | 44 | 23 | - | – | |
Phobius | 26 | 45 | 20 | - | – | |
Phobius | 46 | 56 | 11 | - | – | |
Phobius | 57 | 79 | 23 | - | – | |
TMHMM | 59 | 81 | 23 | - | – | |
Pfam | 67 | 201 | 135 | 1.4E-29 | ||
Phobius | 80 | 115 | 36 | - | – | |
TMHMM | 116 | 138 | 23 | - | – | |
Phobius | 116 | 140 | 25 | - | – | |
Phobius | 141 | 225 | 85 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Iron ion binding | Interacting selectively and non-covalently with iron (Fe) ions. | ||
Biological process | Lipid biosynthetic process | The chemical reactions and pathways resulting in the formation of lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. | ||
Molecular function | Oxidoreductase activity | Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. | ||
Biological process | Oxidation-reduction process | A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. |
Expression pattern of LotjaGi2g1v0315700.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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