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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0315900 |
| Transcript ID | LotjaGi2g1v0315900.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Trichome birefringence-like protein; TAIR: AT1G70230.1 TRICHOME BIREFRINGENCE-LIKE 27; Swiss-Prot: sp|O04523|TBL27_ARATH Protein ALTERED XYLOGLUCAN 4; TrEMBL-Plants: tr|G7K2U2|G7K2U2_MEDTR Pmr5/Cas1p GDSL/SGNH-like acyl-esterase family protein; Found in the gene: LotjaGi2g1v0315900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:79135783..79142542) extracted from Lotus japonicus Gifu genome v1.2.
ATTCATTCTCTCAAGCTTTACAACTTTGCATATGGACTATGGAGACATGTCTCATCTCCTGTCATTATCTCTTCATTAAA TTAGGAACAAGGGACAACAATTGAATAGTACTAGTACTAAGGAAATTAATGAGGTCTTGAAGATCCACATATCCTGGAAA TTGAATGATACATTTAATATAACTCTTTTGTGTGACACAAAAGACATGGAGGGTCTCATCTTCCTCTCTTGACTTTCACA TTGCACAGTGCACATTGCACAATAACCAGTTTCTTCTACATTCTTCTTCTCAGCAGTCAACAACACAAAACTGAAAAGAA AGAAGAAGGATTTGAACATGGGAAGCAAAAACCTCTTCAATGATCATAAATCCATCTCCCTCACTAAGAGAATTCTCCCC TTAACTCTGTATACTCTGCTACCACTGACTCTGGTTTCTATATACTTGTACCTCCTGTACTTAACTCCATTTTCAGCAAC TGAGCTTCTCCATTCAAACACCATCATCACTTACCACTCTTCTCTTTCTTCCTCTTCTAGTACACCTTCTGCTTCTCCTC CTCTACCTTCTTCTCTTCCTCTTCCTTCACCTTCTACACCTTCTCCTTCTGATCCTTCTCTACCTTCTTCTGCAGGTATG TGCAAGCATAACTTCATCTTGTTTAAATTAAACTCTACAATTGCTATACCAGGTGGTGGGTTTTGTCTTAAAAAAATGAA ATTAGCAACTAAGACTTGTTATTGTTGGTTTACTAGACTTATATTTTTGTTCTTGTTAATCATTTTGCAGAAAATGATAA GGCTTCTGAGAACTCATGTGACTACTTTAATGGTGATTGGGTTCATGACATGAGTGGCCCTTTGTACAATGCTACGACAT GCGGTACGATCAAAGAAAGTGAGAATTGTTTCACCAATGGCAGGCCTGACTCTGGCTATCTTTACTGGAGATGGAAACCT AGTGAGTGCAATCTTCCAAGGTTTGAACCTCACACTTTTCTCAAACTCATTGAGAACAAGCATGTAGCTTTTGTTGGGGA TTCTTTAGCTAGGAACCAAATAGAGTCCCTTCTTTGCATGTTAGCCACTGCTTCGACGCCAAAACTTGTCTACAGAATTG GCAAGGACAACCGTCGGTGGCACTTTCCTTCTCACAATGCAAACTTGTCGATGTATTGGTCCCCCTTTCTGGTACATGGT GTTGAAAGATCAGATGAAGGGTCATATTACAACACAATGTATTTGGATCAAGCCAATGAGAGATGGGCAAGGGATGTGGA TCAAATAGACTTGATTGTGGTTTCATTTGGGCATTGGTTTTTGATCCCTGGAGTTTTCTATGAGGGTGGTTCTGTTTTGG GTAGCCTAAACTGTCCTGATCTTAATCACATTGAGACTGATTTTTATGTTCCATTGAGAAAGGCTTTAAGAACTACTCTT AATAGCATCATTGAAAGGAAGGTTTCTACGGCTACTGCTAATGGAAATAAAATTGATGTGATTGTGAAAACATTTTCACC AGATCATTTTGAAGGTGACTGGGATAAGGCTGGAACTTGTTCAAAGACTAAGCCTTATATGAAAGAGGAGAAGCAACTTG GAGGAATGGAAATTGAGATTAGAAGGATTGAGATGGAAGAAGTGGAAAATGCTAAGGCAAAAGCCAATGAATTAGGAGGG TTTAGATTTGAGGTGATGGATATAACCCAATTGGCATTGTTGAGACCAGATGGCCATCCTGGTCCTTATATGAAATATTT TCCATTTGCTAATGGGGTTCCAGAGCATGTGCAGAATGATTGTGTTCATTGGTGTTTGCCAGGGCCCATAGACACATGGA ATGAGATTTTACTCCAGATGATGAAGAAGTGGGAGGAGCAGCCACAGAGAGAATAATGAGCTATTCCTCTCCTCATATAT AATGTTAATATATTATTTATACTTCAATCTTTTCACCATTTAGGTGATGGGTATTGCATTTTAGAAGAGCATTTTTTGTT TAAATTTCAGTATGTAATGAAGAGATGTTTTAATTGAAGAATGAGCTAATCCTCTCCTGATATATACTATTAATATGTTC ATTCTCCTTACTTTCTTTTTTTCTGCCATTGACATACTGTGTATATTGATGAAAGTGGTTTTCACTTCTAAGTATCAGCT TTCTGTTTTCACCAAAACAAAAAGGTTCAATTTTGAGTTTGAAAGCAACTAAAAGAGTAGACCTCAAATTCAGAAAGCTT GATGGACACTATTACAGTAACATACAGTCGCTATCCATGAAATTTGCCCTTTTATATTTAGAAGAGTGAAGGATATCAAC ATGCAACATATCATAAATAATATGAATAAAATAATCACTGTTCAACGTGTCATTCCACCTAACTGAAGTTTTTAATTACA AAATGTTATAAATTGTCTCTCCATGTTTTAGATTAATGTTGCAAGGTGCCTACTGACGAGTAGTATTTTGCAGCTCTTTA AGGGTGCTTTGATTTCCTACCAATAAATAGCTATAGATGTGCAATGGTCAATGGCAAAAAAAATAAGATTCCTGGCCAAT CCAAGATAGTATCAGAGCATATTTCAAAAGCATAATCAACAACTCTAGTAGTTGAAATGATGTTTGGGTGTATCAATGAA GCAGAATCAATTCTATAAAACTAATTCTATTTTACCCAACAAATAACTACTTCTTCATTAAACATAATCAATTATGACTT ATGAGGTTTACAAGTGACTTTCATAACATTACCTTACAACAAATGGTACGATGGGAAAATAATTTCCAAGAACATTTAGA CCATTTTATTTATGAGAACCATTTTTTCCATAGAGGTATATAAATTTAAGGCTTAAATACTCGGGAGGTCCCTGAAATTG TGTGGCGTACGAAAATAAGTCCCTGAATTTTTTTTTTCGATTTCGGATCCTTGGGATTTTTTTTTAATCAAAATAGGTCC CTACCCGTGTTTTATGCTTATGTGGCTCATTTTTTACACAATCACAATTTCCACGTGGACTTCTTCTTTTAATTTTAATT TTCTTTTAACTTTCCATCTTCCTCAATCCTCTTCTTCATACTTCCAGAAACCTTCAAAACCTTCAACTTCTTTTGCTCCT CTCTCCACCGCACCACCACCAGCCCCCACCCCGAAACCTTCGCACCCCACCGCACCACCACCAGCCACCATCGAAACCTT CAACCTTCAACTTCTTCTGGTTCTCCCTCTTCTCCCAGCAACCCGCATCAGAACTTGGTTCTCCCTCTTCTCCCAGCAAT CAGAGCCTCAAAACCCATAACCCCAACCCATCGAAACCCACACCCCAAAACTGTTGGTTTTTTTTAACGTGAAAGAGAAG AGAAATATTTATGATGGAAGGCAGATTTTTTATTAATCAGAACTTGCTCTTTTAAAGGTAAAGAGTAACTAACAAACTGA CTAGAAATCTGCAAAATTTGAAATACTAACAGAAGATACTCTAAACAAATTCAAAGATAGTCTAACTAATCATCCTAACA GAATTAGGACTTATTCAAATTTAAATAACAACTTCAAACTAACAACTTAAATTTAAAATTCAAACAGCTACTGAGACATA ATTTCAACACTCCTTCTTGGATCAGTAGCTGGAAACTTCTAACTTCTCAAAGTTCAAAAAGTCAACCATACTGGAATATG TGCTCCGGCAGGTTCGCTTCCATTCCATGGACACATCACGTATGCATAAGAATATGGTAGCGGAGGTGCAAAATACGCCA CACTATAGTTGTTGTAAATAAAAGCAGGAAGTGGATGAACATAGTAATGTGTAGGGTACATGTGATGACATGGAGGACTC TCATTAGGTAGTTTTGGATTTTGATCTGTTCCTTGAGGTCCTGGCACATGAACATGACCTTCAGGCTCTTTATCTTTTGG CTGGCGACCCAAAACCTCAGTGGCTGCAAAAACACCACCATCATCTTCAACAGTAACACCCCTGTTGTCGTTGTTGCAAT TGGCTTTCCCTTTCTTTTTCTCTTCGTCGTCACCTTCACTAAGAAGTGTGACAGGCTCGTTGGCCAAATCACCATGAAAT GCAATTTTCTCCTCCTTTATTGAATCAAATGAAAAAGTCTTGCTCCTCATTTTTACCTTGAACATTTCAAGGCCTTCTGG ATCTTTAACTATGCAGCTTTTATCTTCAAAGATAACTTTGAAGTCTTTCTCAAGCAACTGTCCAATACTAAGCAAGTTTT TAGTAATTTCAGGTACATACAAAACATCAGAGAGAATTTTTGTACCTGTGTAGCTTTCTATAGCTACTGTCCCCTTGCCT TTTACTGGAATTTTTTCGCCATTCCCGATTCTGACCCATTTGACTTTGGTGTTGTCCAAACTCTTGAACAACTCTTTGTC ATTGGCCATGTGATTAGTACAACCACTGTCAATCAACCAAGATTCACAAGAATTATTACTAGAGAAGCAAGTAGCAACAA ATAGCACGTCTTCTTCCTCCTCTTGCGCATTTTTTGCTTCATTTGCACTTTCCTGGATTTTGTCTCTACAAATTACAGCT TCATGCCCCATCTCGTTGCACTTGCTGCATTTTGCATCTGGCCTTCTCCAACATCTGAACGGTGGGTGACCCATCTTTCC GCAATGATGACAAGGTGGATAATTTTTTCTACCTCTGTCATTGTTTTGGTTGTTTGGAAAATTCTCACAACTGGTTGGTT GGTTCTTCTTAATAGAATTATTTCTTTTGGATCCATTATCATGATGCTTTGCTGCAAAAGCACCTTCGACAACACGATCT TCTCTCATCAGCCTTCGTTGTTCTTGGGCTTGCAATGCATGCATCACTTCTGCCAAAGTGATTTTAGAAAGATCCTTCGT ATTCTCAAGTGAGGCAATAGACGCTTCATACCTCTCAGGAACTGTTACCAGAATTTTTTCAACAATTCTTGAATCAGCAA ACGCACTTCCAAGCAGCCTTACTTTGTTAGCAATATCTAACAATTTTTCTGAGTATTCCTTGATTGTCTCAGACTCTTTC ATCTTCTGCATCTCAAATTCTCTCATTAAATTGAGCACTTGCATGCTTCTTATTCTTTCATCTCCAACATACTCCTCCTT CAAATAATCCCAAATTGCTTTCGCTGATTTGAGACTCATGATCCTTGTGAAGATGGTTGATGAAACACCAGCAAAAAGGC ATGATTTTGCCTTTGCTTTCCGGGTTTTTTTCTCCTTGTGACTCTTGATCTGGGCCATGGTAGGATTGGCAGGCAGCGGA ACGACTTCATAATCCTCTTCTATAGCTTCCCAAAGATCCAAAGCCTCTAGGTAAGCCTCCATCTTGACAGCCCATAGATC GTAGTTTTCTCCATCAAAGACTGGAGGTGCAACTTTGGAGAAATTTGATTCAGCATCCATGTTCACAGGTCCGTAAGAAG ATGGCTCTAGATACCACTTTGTTGGTTTTTTTTAACGTGAAAGAGAAGAGAAATATTTATGATGGAAGACAGATTTTTTA TTAATCAGAACTTGCTCTTTTAAAGGTAAAGAGTAACTAACAAACTGACTAGAAATCTGCAAAATTTGAAATACTAACAG AAGATACTCTAAACAAATTCAAAGATAGTCTAACTAATCATCCTAACAGAATTAGGACTTATTCAAATTTAAATAACAAC TTCAAACTAACAACTTAAATTTAAAATTCAAACAGCTACTGAGACATAAAACTTGGTTCTCCCTCTTCTCCCAGCAATCA GAGCCTCAAAACCCATAACCCCAACCCATCGAAACCCACACCCCAAAACCCATAACTTGTCCCACAGAACCTGTTGGAGT TGACATGGAAGAGCGCGAGATCTGAGAGCAAGCCAAGCTCGTTGGCAATGTCATCGTGGTTGAGGTCGTTTTCAGCGACT ATGCAGATCTTGGGGTGGTCGACGAAGAGAAGAGGGTGATGGTTATGGGTTTTGAGAAAATGGGTTTGTGGGTGGAGAAG AGAAGAGGCATATCTATTGGTGGAGAAGAGAAAATGAGTTTTAACGGATTGATTCCTAGGATAAGTACTGCTCCCACTTC CAGGTCGTCCTCCACGGCGTCGTTAACATGCAGCTTCCGAATTAGTGGCTTTGGGATATGGTGGATGAGTTCATTTGCCA GTTTCAAAGCTTACGTCAGTACCGTGCCAAGATGAAGAAGGAGGAAAGGTTTCTTCTGGGTTTTTTATGATGTTTTTCTG GGTTTTTGTAAATCATTAACACACTTGGCATAAAATAAAATAAAAAAATCCACGTGGAAATTGTGATTGTGTAAAAAATG AGCCACATAAGCATGAAACACGGGTAGGGACTTATTTTGATTAAAAAAAAAATTCCAGGGATCCGAAATCGGAATTTTTT TTTCAGGGACTTATTTTCATACGCCACACAATTTCAGGGACCTCTAGAGTATTTAAGCCTAAATTTAAATAACACTATAT TAAATCATGTTTATCACATGCAATTTTAGTAGAATAAATTCTGCTAACAACTATCCAAAACACTGAATCCAAGATGGCAT TGGTTGTTTTTCAGAGTGATAACAAAGAAATTGGAAGAGAATGAGTAGCTATTACCTGGCCTTGACACTTGGGCAGGGCT CCATTGAGTCAAGTTTTGCAGCAACGTTTGCCACACAGCCTTCTGTAACTTTGTTAAGGTACACCATTGGTGTATTCCCA ATCAACGGCACTAATTTGCAACAATCATCCAAAATTAACA
CDS sequence (LotjaGi2g1v0315900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGAAGCAAAAACCTCTTCAATGATCATAAATCCATCTCCCTCACTAAGAGAATTCTCCCCTTAACTCTGTATACTCT GCTACCACTGACTCTGGTTTCTATATACTTGTACCTCCTGTACTTAACTCCATTTTCAGCAACTGAGCTTCTCCATTCAA ACACCATCATCACTTACCACTCTTCTCTTTCTTCCTCTTCTAGTACACCTTCTGCTTCTCCTCCTCTACCTTCTTCTCTT CCTCTTCCTTCACCTTCTACACCTTCTCCTTCTGATCCTTCTCTACCTTCTTCTGCAGAAAATGATAAGGCTTCTGAGAA CTCATGTGACTACTTTAATGGTGATTGGGTTCATGACATGAGTGGCCCTTTGTACAATGCTACGACATGCGGTACGATCA AAGAAAGTGAGAATTGTTTCACCAATGGCAGGCCTGACTCTGGCTATCTTTACTGGAGATGGAAACCTAGTGAGTGCAAT CTTCCAAGGTTTGAACCTCACACTTTTCTCAAACTCATTGAGAACAAGCATGTAGCTTTTGTTGGGGATTCTTTAGCTAG GAACCAAATAGAGTCCCTTCTTTGCATGTTAGCCACTGCTTCGACGCCAAAACTTGTCTACAGAATTGGCAAGGACAACC GTCGGTGGCACTTTCCTTCTCACAATGCAAACTTGTCGATGTATTGGTCCCCCTTTCTGGTACATGGTGTTGAAAGATCA GATGAAGGGTCATATTACAACACAATGTATTTGGATCAAGCCAATGAGAGATGGGCAAGGGATGTGGATCAAATAGACTT GATTGTGGTTTCATTTGGGCATTGGTTTTTGATCCCTGGAGTTTTCTATGAGGGTGGTTCTGTTTTGGGTAGCCTAAACT GTCCTGATCTTAATCACATTGAGACTGATTTTTATGTTCCATTGAGAAAGGCTTTAAGAACTACTCTTAATAGCATCATT GAAAGGAAGGTTTCTACGGCTACTGCTAATGGAAATAAAATTGATGTGATTGTGAAAACATTTTCACCAGATCATTTTGA AGGTGACTGGGATAAGGCTGGAACTTGTTCAAAGACTAAGCCTTATATGAAAGAGGAGAAGCAACTTGGAGGAATGGAAA TTGAGATTAGAAGGATTGAGATGGAAGAAGTGGAAAATGCTAAGGCAAAAGCCAATGAATTAGGAGGGTTTAGATTTGAG GTGATGGATATAACCCAATTGGCATTGTTGAGACCAGATGGCCATCCTGGTCCTTATATGAAATATTTTCCATTTGCTAA TGGGGTTCCAGAGCATGTGCAGAATGATTGTGTTCATTGGTGTTTGCCAGGGCCCATAGACACATGGAATGAGATTTTAC TCCAGATGATGAAGAAGTGGGAGGAGCAGCCACAGAGAGAATAA
Protein sequence (LotjaGi2g1v0315900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGSKNLFNDHKSISLTKRILPLTLYTLLPLTLVSIYLYLLYLTPFSATELLHSNTIITYHSSLSSSSSTPSASPPLPSSL PLPSPSTPSPSDPSLPSSAENDKASENSCDYFNGDWVHDMSGPLYNATTCGTIKESENCFTNGRPDSGYLYWRWKPSECN LPRFEPHTFLKLIENKHVAFVGDSLARNQIESLLCMLATASTPKLVYRIGKDNRRWHFPSHNANLSMYWSPFLVHGVERS DEGSYYNTMYLDQANERWARDVDQIDLIVVSFGHWFLIPGVFYEGGSVLGSLNCPDLNHIETDFYVPLRKALRTTLNSII ERKVSTATANGNKIDVIVKTFSPDHFEGDWDKAGTCSKTKPYMKEEKQLGGMEIEIRRIEMEEVENAKAKANELGGFRFE VMDITQLALLRPDGHPGPYMKYFPFANGVPEHVQNDCVHWCLPGPIDTWNEILLQMMKKWEEQPQRE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 19 | 19 | - | – | |
| TMHMM | 20 | 42 | 23 | - | – | |
| Phobius | 20 | 41 | 22 | - | – | |
| PANTHER | 21 | 460 | 440 | 3.6E-188 | ||
| PANTHER | 21 | 460 | 440 | 3.6E-188 | – | |
| Phobius | 42 | 467 | 426 | - | – | |
| MobiDBLite | 65 | 105 | 41 | - | – | |
| MobiDBLite | 74 | 92 | 19 | - | – | |
| Pfam | 108 | 160 | 53 | 1.5E-21 | ||
| Pfam | 161 | 456 | 296 | 1.0E-91 | ||
| Coils | 362 | 394 | 33 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0315900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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