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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0316400 |
| Transcript ID | LotjaGi2g1v0316400.2 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Trichome birefringence-like protein; TAIR: AT1G70230.1 TRICHOME BIREFRINGENCE-LIKE 27; Swiss-Prot: sp|O04523|TBL27_ARATH Protein ALTERED XYLOGLUCAN 4; TrEMBL-Plants: tr|A0A151TGN5|A0A151TGN5_CAJCA Uncharacterized protein; Found in the gene: LotjaGi2g1v0316400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:79155015..79158352) extracted from Lotus japonicus Gifu genome v1.2.
TATCAAGTTATCATTGAAAGTATGCATAGCAGCATAAGTTTTTGTCACATTTTTTCTTAGTGGTACTCCCACATCTTTTA GCTACTTTACACATCTGAATGCATAACATAAAAAACAACCAGCACAAAATTGGAATAGCAATGTTTGTTGACAAAAATCT GCTACAAAATTTCAGAAAATTAACTACTTAGAGAGATCATGAAGAATGAAGATCCTGCAACGTGTCTATAGCCGAATGAA TATCCCAACAAACCTGCTTCTCGGACTTTCACTTCACCTGATCAAAGCAAAAGCCAAAAAAATAGTGCTTCTTTCCTCAT TCTTCTCACCTGACAACACCAGAATCACACACAAGTAGGGCGAAAAGAGCAGAAAAGGAAAGCATAACCGAGAAGGAAGG CTTTGAAAATGGGAAGCACAAACCCCTTCAAAGATATTTCCCTCTCCCTCACCAACATTCTTCTCCCCTGCACCCTCCTT GCTCTGTTTCCTATAGCTCTGTTCAGTTTCTACTTTCACCTCCTACTTCCCTTTTCTCCTTCTCCACAAACTGAGTTCAC CAATTCCAGCCCCATCACCGACATCTCCCACTCTTCTCTTTCTGCTTCTCCCCTTTCTCCATCATCATCATCATCATCAT CATCATCATCATGTGACTACTCAAATGGTGAATGGGTCCAAGACAAAAGAGGCCCTTTATACAATGACACATCATGTGCT GGTTTCATCAAAGAAGGTAGAAATTGCATCAAGCATGGAAGGCCTGACTCTGGCTACCTTTACTGGAGATGGAAACCAAG TGAATGCAATCTTCCAAGGTTTGAACCAAACACTTTCCTCAAACTAATTGAAAACAAGCATGCAGCTTTTGTTGGGGATT CTATGGCAAGAAACCAATTAGAGTCCCTTCTTTGCATGTTATCCTCTGCTTCAGCCCCTAAGCTTGTCTACCAAATTGGC AAGGACAACCAATTCTTCTCTAGGTGGCACTTTCCTTCATACAATGCAAGTGTTTCACTGTATTGGTCACCATTTCTTGT GCAAGGTGTTGAAAAATCAAACACAAGGCCAAATAATATTTTATACTTGGATCATGTTGATGAGAGGTGGATAAAGGATA TTGATCAATTGGACATGATTGTGCTTTCATTTGGGCATTGGTTTTTGCTTCCAGCAGTTTACTATGAGGGTGGTTCAGTT TTAGGTTGCCATTACTGTCCTGGCCTAAATCACACTGAGATTGGATTTTACGATGTAATAAGAAAGGCTTTAAGGACTAC CCTTAATAGCATAATTGAAAGAAGAGGAGGTAAAGGTAAAGGCAATGGAATAGATGTAATTGTAACAACATTTACACCTC ATCATTTTGAAGGTGATTGGGATAAGGCAGGTGCTTGTCCAAAGACAATACCTTATAGAAATGGGGAGAAGCAACTTGAA GGAATGGATGCTGAGATGAGAAAGATTGAGATAGAAGAAGTGGAAGATGCCAAGGGAAAAACTAGTAAACTTGGAATGTT TAGGTTGGAGGCATTGGATGTAACTAAATTAGCATTTTTGAGACCTGATGGTCACCCAGGACCATATATGAATCCTCTTC CATTTGCTAATGGGGTTCGAGAGCGCGTGCAGAATGATTGTGTTCATTGGTGCTTGCCCGGGCCTATAGACACATGGAAT GAGATCTTTCTAGAAATTATGAAGAAGTGGGAGAAACAGACAGGGAGTGAACACTGAGGTATTTCTCATGTTTTGTTAAT TTATCATAGTCTAAATTATCTAATTTTTCCATCACAGATGATGAATATTGTCAAGGAAAAGAGAAGTTTTAATTTTCTGC TTAAAAGTCTTAAAAGGAAGTTTTTACAAACATATATTTTAATGACAGCAATTAACATTTTTCCCTGAATATTTGATAAG TTGTCACAATAAAATTTGATAAGTTGTCACAATAAAGTATTGTAAGCATTGTCACAATACTCTCCTTGTCAATTACAGTT ACCATAGTTTTAAATCCAAGCCCCCAACTGTGAAGGAAATTGTGACATAAGGTTTGGTAGGTTTGCAGAACTGCAATTGC GACTGCATCATCCGTATTTGTGGTAATTTTCTACAATATCAAGTATCGCGGCCTGACTGTAATCATAATTTTAAACTTTG ATAGTCACTATCATTTCGTTTTCTTTTTCATGTTTAGAAGAAATGAGGAATCAATATTCAATATCATGAGACATCTAACT TGAATTATAGCATACCTGCAAGAAGAGACTACAAATGTATGAAGACACAAATTTGGAGCCGGGCACAATTTTAAATATGA AGACATCTTGTTAAAGTTTAAATATTTGATTAGCAACCATCTACTGCTTGCTGATAGTGATTGCAGTTTACTATACAATT TAAATTTTAGTATCAACAAGCATAAATATAAAAATTCTAAAACAAAGACCTGGTATATCAAATTTCTAGCATCTGCATAC TCATGCGATGCGACAGTTTGCATATGAAAACAGAGTAAGTGTATTATGTTGATGAAGGGAACCTGATTGAAAATTGAATA TTACAATTCGATAATGTCAATAAGAAGCTGTCTCCAATGTTTTGACCCAATGTGGTTTAAAATATGACAAGTTTCCAAGA CTATAAACATCATATTTTTTGATATTTTATGGTAGAGCAAGCAAAGTAAAGTTTCTGTTTTGTTCTTCACTGCGAATCAT AACATAGTTATTAGTATTATATTTAGTAGTTTCATCCCATACATCCAAATTGATGGAAGAAAAATAGGGGTAACCGGGTA ATAGATGAAGTTGAGTGTAACATATTTTTATATACTGATGATAACCATTTAGTTGATGATAACAATTTAGTGGTTCAATA CTTTATCGTTTAAGTAAGTTATTGAAAGTTTGATTTCAGACTTTTGTGAATAGAAAAAATTCATTAACAGCTCAATGCAT TGACCAAATGATTAGTCTTATACCTACGACCGTGAGATATGAAAAGAAAGCGGGTCATCAACCTCCTCTCCTCGACAATG AAAAGCATGGTTTCTATAATAGAAAAAAAAAAACACATTGGTTCTCTTTTTTGGGTCAAAGAAAGGTAGATCAAAAGAAG GCCTTCTTGTGCGCTTCTTGGTTTGTTTACGAAGCAGAAAGGCCAAGTGGGTGTTCTGTTTGATCCAAATTTGTCTATTG CCATGGACGTAATATTAATTAGGTTGCGCGTCTCTATTAAATTTTTTTTAATTTAATTTGATTAGAAAGCATATTTCATG TTAGGTACAACCGTACAACAACCATGATTTATATGAAATTTTTTAATTATCAATATAA
CDS sequence (LotjaGi2g1v0316400.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGAAGCACAAACCCCTTCAAAGATATTTCCCTCTCCCTCACCAACATTCTTCTCCCCTGCACCCTCCTTGCTCTGTT TCCTATAGCTCTGTTCAGTTTCTACTTTCACCTCCTACTTCCCTTTTCTCCTTCTCCACAAACTGAGTTCACCAATTCCA GCCCCATCACCGACATCTCCCACTCTTCTCTTTCTGCTTCTCCCCTTTCTCCATCATCATCATCATCATCATCATCATCA TCATGTGACTACTCAAATGGTGAATGGGTCCAAGACAAAAGAGGCCCTTTATACAATGACACATCATGTGCTGGTTTCAT CAAAGAAGGTAGAAATTGCATCAAGCATGGAAGGCCTGACTCTGGCTACCTTTACTGGAGATGGAAACCAAGTGAATGCA ATCTTCCAAGGTTTGAACCAAACACTTTCCTCAAACTAATTGAAAACAAGCATGCAGCTTTTGTTGGGGATTCTATGGCA AGAAACCAATTAGAGTCCCTTCTTTGCATGTTATCCTCTGCTTCAGCCCCTAAGCTTGTCTACCAAATTGGCAAGGACAA CCAATTCTTCTCTAGGTGGCACTTTCCTTCATACAATGCAAGTGTTTCACTGTATTGGTCACCATTTCTTGTGCAAGGTG TTGAAAAATCAAACACAAGGCCAAATAATATTTTATACTTGGATCATGTTGATGAGAGGTGGATAAAGGATATTGATCAA TTGGACATGATTGTGCTTTCATTTGGGCATTGGTTTTTGCTTCCAGCAGTTTACTATGAGGGTGGTTCAGTTTTAGGTTG CCATTACTGTCCTGGCCTAAATCACACTGAGATTGGATTTTACGATGTAATAAGAAAGGCTTTAAGGACTACCCTTAATA GCATAATTGAAAGAAGAGGAGGTAAAGGTAAAGGCAATGGAATAGATGTAATTGTAACAACATTTACACCTCATCATTTT GAAGGTGATTGGGATAAGGCAGGTGCTTGTCCAAAGACAATACCTTATAGAAATGGGGAGAAGCAACTTGAAGGAATGGA TGCTGAGATGAGAAAGATTGAGATAGAAGAAGTGGAAGATGCCAAGGGAAAAACTAGTAAACTTGGAATGTTTAGGTTGG AGGCATTGGATGTAACTAAATTAGCATTTTTGAGACCTGATGGTCACCCAGGACCATATATGAATCCTCTTCCATTTGCT AATGGGGTTCGAGAGCGCGTGCAGAATGATTGTGTTCATTGGTGCTTGCCCGGGCCTATAGACACATGGAATGAGATCTT TCTAGAAATTATGAAGAAGTGGGAGAAACAGACAGGGAGTGAACACTGA
Protein sequence (LotjaGi2g1v0316400.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGSTNPFKDISLSLTNILLPCTLLALFPIALFSFYFHLLLPFSPSPQTEFTNSSPITDISHSSLSASPLSPSSSSSSSSS SCDYSNGEWVQDKRGPLYNDTSCAGFIKEGRNCIKHGRPDSGYLYWRWKPSECNLPRFEPNTFLKLIENKHAAFVGDSMA RNQLESLLCMLSSASAPKLVYQIGKDNQFFSRWHFPSYNASVSLYWSPFLVQGVEKSNTRPNNILYLDHVDERWIKDIDQ LDMIVLSFGHWFLLPAVYYEGGSVLGCHYCPGLNHTEIGFYDVIRKALRTTLNSIIERRGGKGKGNGIDVIVTTFTPHHF EGDWDKAGACPKTIPYRNGEKQLEGMDAEMRKIEIEEVEDAKGKTSKLGMFRLEALDVTKLAFLRPDGHPGPYMNPLPFA NGVRERVQNDCVHWCLPGPIDTWNEIFLEIMKKWEKQTGSEH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 11 | 11 | - | – | |
| PANTHER | 7 | 435 | 429 | 9.4E-194 | ||
| PANTHER | 7 | 435 | 429 | 9.4E-194 | ||
| Phobius | 12 | 36 | 25 | - | – | |
| TMHMM | 12 | 34 | 23 | - | – | |
| Phobius | 37 | 442 | 406 | - | – | |
| Pfam | 81 | 134 | 54 | 2.1E-21 | ||
| Pfam | 135 | 429 | 295 | 1.9E-90 | ||
| Coils | 336 | 356 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Golgi apparatus | A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions. | ||
| Biological process | Xyloglucan metabolic process | The chemical reactions and pathways involving xyloglucan, the cross-linking glycan composed of (1->4)-beta-D-glucan backbone substituted at regular intervals with beta-D-xylosyl-(1->6) residues, which is present in the primary cell wall of most higher plants. | ||
| Molecular function | O-acetyltransferase activity | Catalysis of the transfer of an acetyl group to an oxygen atom on the acceptor molecule. |
Expression pattern of LotjaGi2g1v0316400.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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