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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0319000 |
| Transcript ID | LotjaGi2g1v0319000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box/LRR protein; TAIR: AT4G05460.1 RNI-like superfamily protein; Swiss-Prot: sp|Q9M0U9|SKI19_ARATH F-box protein SKIP19; TrEMBL-Plants: tr|A0A0D2NIS0|A0A0D2NIS0_GOSRA Uncharacterized protein; Found in the gene: LotjaGi2g1v0319000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:79392153..79392962) extracted from Lotus japonicus Gifu genome v1.2.
GGATGGTATATTTGAGATCGAGGAAGAAAGTGAAGGGAGAGGGGCCAAACTGGCTTGAGCTTCCAAGAGACATCATAGCA AGCATATTCCAAATGCTCGATGTTGTTGAAGTTGTGATGAGTGCATCTCATGTGTGCACTTTGTGGAGGAACATTTGCAA AGATCCTCTCATGTGGCGTACCATTGACATGACTAATCTCTGCACTCGCAATTTTAGACGCTACGATTTGGAGAAGGTTT GTCGTTGTGTTGTTCAACGAAGTAGCGGTCATCTAGAAGACATTCGAATTGAGTGTTTTGCCACCGATAATCTCCTCACA TACATTGGTGAAAGGTAGAATTTTATTTTCTATATATATTTGCTTGTTATGAGCATTTCTAAATTTAGTTGCCATGAATT ACTAGTTTATATATGATTGTCTTATCAGTTTTTCTTTAAATTTTAAAGCACAAGCCATGTAAAGAACTTCACAGTAGCAT ATACTAGCATCCTCATTAATCATTAGCACAATAGTAAAGTGAATCATATTTTCCTATTAAAAAAATTACATATATAGTTC ACTAATAGATTATATTTAAATTAAATGAACCCCAAGCCCAAAACCCAAATTGATATACCCATTTTATTTCATCAGCATAT ACAAAATAGACAACCATGGATCTTCACAGTAGCAACATTAGCATCCTCATTAATCATTAGCACAATAGTAAAGTGATGTT AAAACTGCCAAATACATGTTATCAATGAAAATAGAAACTTTGTGATTCAAAAGCGAAACCTTTTCAATGCTGCAAACTGC AAAATTAAAT
CDS sequence (LotjaGi2g1v0319000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTATATTTGAGATCGAGGAAGAAAGTGAAGGGAGAGGGGCCAAACTGGCTTGAGCTTCCAAGAGACATCATAGCAAG CATATTCCAAATGCTCGATGTTGTTGAAGTTGTGATGAGTGCATCTCATGTGTGCACTTTGTGGAGGAACATTTGCAAAG ATCCTCTCATGTGGCGTACCATTGACATGACTAATCTCTGCACTCGCAATTTTAGACGCTACGATTTGGAGAAGGTTTGT CGTTGTGTTGTTCAACGAAGTAGCGGTCATCTAGAAGACATTCGAATTGAGTGTTTTGCCACCGATAATCTCCTCACATA CATTGGTGAAAGGTAG
Protein sequence (LotjaGi2g1v0319000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVYLRSRKKVKGEGPNWLELPRDIIASIFQMLDVVEVVMSASHVCTLWRNICKDPLMWRTIDMTNLCTRNFRRYDLEKVC RCVVQRSSGHLEDIRIECFATDNLLTYIGER
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 6 | 111 | 106 | 5.0E-38 | – | |
| PANTHER | 6 | 111 | 106 | 5.0E-38 | – | |
| SUPERFAMILY | 9 | 74 | 66 | 1.19E-13 | ||
| Gene3D | 11 | 110 | 100 | 5.2E-14 | ||
| ProSiteProfiles | 14 | 61 | 48 | 11.114 | ||
| Pfam | 17 | 62 | 46 | 1.2E-10 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi2g1v0319000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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