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LotjaGi2g1v0320500.2

Overview

Field Value
Gene ID LotjaGi2g1v0320500
Transcript ID LotjaGi2g1v0320500.2
Related isoforms 2
Lotus japonicus genome version Gifu v1.2
Description AMSH-like ubiquitin thioesterase 1; TAIR: AT1G10600.1 associated molecule with the SH3 domain of STAM 2; Swiss-Prot: sp|Q6NKP9|AMSH2_ARATH AMSH-like ubiquitin thioesterase 2; TrEMBL-Plants: tr|A0A151TGJ4|A0A151TGJ4_CAJCA ESCRT I complex subunit sst2; Found in the gene: LotjaGi2g1v0320500
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr2:79558339..79563683) extracted from Lotus japonicus Gifu genome v1.2.

TGATAATTATATTTTATTTTTTTAGTTTAACTTTACCAAAATAATCTCCTATATTTTTTTCCCCTTCAATATGTAAAAGT TTCATCTCATGGCAATTAGCAAAGAGCTTAATTTTGATCCACTATTTTGAAGATCATCTTTCAAGCCTTCGCCCCCCAGT GGCCAAAGCCTTCTCTATGTTTCATACTCAAGTTTATCTTAGTTAGGTGTGGGCCAGAAGCACACCGAGAGGGTTATTTT AAAAAATAAAAAAGAAAATTGAGGAGGAATTTTCATGAAAGAAAATATGGATATTGATCATCCTTACCAGGTAAGATATT GGCAATCTGAATTTTTTTGCAAATAGTGTCTGTTGCATGAGTTGATTTTACTTTATTTTTACTTTTTTCTGTTAAAGAGT GGCTTCATATTGAATTCTGCAGCTCATAAAGGGATTACCAAAAGGAGCACTATCTGTAAAGTGTAAAATTATGTGGTTGA TGTAAAAAGAAGCTCCTTTCGCTGTATAGATTGTATACCTTTTTTGAAATTTATACAACTGATTGTTCAACTATTGATCT CCCAGATGTTCAAACAGTTCAATGAAGAACAGGATGCAAGTAACATGAAGGTAAAGCAGCACATTTTTCTGGTTGATTGT AATTATGTAACATGTAAGAAATCTCTTGATTCCTGTAGTTTCTGTGGCAGATTAGAAATAATGAATCAGCAGAAAGCAGA GTTCAAAGGTATAACCAATGACTATATTGTTCAAATTCTGCATGTTCTGTTTCTTACTTACTTCATAATTTTAGGCTGAG TAGGGAAACTATGAATGAATGTTCTAAAATTCTTATAACATTCTGATATCTGTACAGATGTGTTATTAGAAATTTGGAAT ACAATTTTAATTTTTCCCCCTTTTGATTGGGATGCAGCTTAAGGGTCACTGAAGAGGAAACAGCTAGGGTTTCATCATGT CAATTAGGAGATTTGAGTAGTAGGTTGTGCCACTGCTCACTGAATTATTTAAAACCAGTTGCTGTTAAGGAAGCCTATCG ACGCTTCTTAGATAATAAAGTAACTCAGTCCTCACCTTCCCCTGCACTCTGCTTTGTGAAGACAGTGCCTCAAGATACAC AAAATTCTCATATTACAGCTTTTAATTCAGGAGATGGATCCTCGACGTCAGATAATGAATCAACTTCATCAAATACCGTT CGGGATGTACATATTGTAAGAACCACTATTTCATGTATGAACATTACACTGAACATCAAAATTGTCTCTATTAATTAGCC CCACTATACATGACCATTGCAGACTATTTATGCTTAACAGCTATTCGTTTCATATTTTCCAGTCAATGCGATTGATGGAG GATTTTCTTGATCTTGCTAAGGAAAATACAGAAAAGGATCTGGAAACTTGTGGTATACTTGGTGCCTTCCTTGTAAGAAT CATTTTAAAATAATAACTTATTGCCTTTGGCTGTCCTGTTAAATTTTCTTGTGATTTTGAAGGCCATAGACAGAGATATT AGTTTTATCAGATTATGGCATTATTTTCAGAAAATTTCCACAAAATGGGTAATGTGTCATACCACTACCTTCTGCATGAT TCCTCCTTCTTTGGATCTTTCGATAGGTTTGAAATAAATGAGACAACTAAAATCTCTCTACCTTCCTCTCTCATATGTTA CATTCACCATGTTTACTTCTACTTCTGTTTTTAATGCTGGTAGGATGCTTATTCACTTTCTATCTTGTACAGTTGCGTTT AACTATATGTCATTGTTTTTTTAGAGATTTAAATCTGCTAGAGTAGTCTTTTGTGGTAAAGAAATGAAGAATCTGATCTG CTAAATTGCTTTACAGAATTTGAAATTGATATGTCATTATGTCCTTAAATTATCCAGGAGAAGGGAACCCTCTATATGAC TACTCTAATCATACCAAAGCAGGAATCAGCTTCTAATTCTGTTAGTATTCGGATTGTGCTACATTGTTTTTAGTTTGGTT TTACATTATTTTAGCACATATGCTTGTTAAAAAAAAATTAGCACATGTTTTGTAGAGGGCATGATTTTATTACTGCTTGT TGCTAACTTGCTGCACTGTATTACAGTGTCAAGCTACAAATGAGGAGGAAGTTTTCAAAATCCTAAATGAAAGATCACTT TATCCTGTAGGATGGATCCATGTATGTCTTCTTATTCTTTTGCTATGTTAATTAAGATTAGGGGGTTTTGCTGGTTGGCC TTGATTCAGAGAACTTTATAAATCAATTCTGTTAAGGTTGGGTAGGTGAGGCTTAGGATAAAAATTCATCAACCCAAATA AACCTATCTTAGCAATGATTGGGTTCATCTTGGTTGGGCTAAAAGTAGTGTCATGTTGAGGATGAAACCTGAAAATGACA TTTAGAATAAAATACTAATTAGATTCACTGTGTCAGGTCAGGTTGAGATATTAAAACTGACCATCCAACTTTTTTATTTT GGATTGTCCTGAAGTAAGCTTAGTAGGAAATGGGTGCCAAGGTCAATAGGCCCAAATCACTTGAAAATCTAGTAAATTAG TGGTAGCAACATTGTCCAGACTTAGTGTTTTAACTTTTAAGCATACTGAGAGCCTCTATCCATTAAAACCATGAAATGCT TATACCTTTCTTCTTTGGTACTGTTTTCTTTGATCAAAATAAACATCATTATTATCATCTTAGATTGCATTAGAGCCCAA ATTAGCCCAAACAAAAGAGTGAAAAGACCATATCCCTCATTTATCCCAAGTTAGTCTGCATGGGCTCAGCAACAGTAGTT CCTCCAGGTTTGACTTCTCTAACCTTTCTCTTTTTCTAAAAAATTTTAGACACATCCTTCTCAGAGTTGTTTCATGTCAT CGGTGGATCTGCATACTCAACACTCATACCAGGTGATTGATCCACGTATATATTGCTATTACTGACATTTTTCTTGTAAA AAGCATTTATCAGCATGTTAAGTATTAACACCCTTATGAATCAATGTTGCTTAAGAATTTATCTTGTGAATTAAATCTAA ATTTTCACTTGCACCAAGGTCGCCATTATGATTTTGGTGGCAGCCTGCGATAGGGACAACCTTCACGATTTTGGTGGCAG CCTGCAATAGCGACCATTTTAGTTAGGGATAAAAAAAATCACTATATGTGGTGATATATGCATATTTAATTCTTTTTTGA TAAAGTTGATGATTAAAGTTTAAGTTTAATCACACTTTTGAGCCCTATACTTTTGTCAATGCGTGATTTTGGTCCTTGTA CTTTCAATGGTACAAATCAAGTCCTTGTACTTTCAAAATTAAACAAGTTCGATCCCACTGTTATCATCCAATACATAATG GAGTTTACTGACGTAGAGGGTGTATATCTTACATGGCAAGTGACTAGGATAATCAATGTCATCCTAGTCAGTTGCCACAT CAGATATACATCTTCAATGCGAACAAACTGTTTGTAATAATAATAATAATCAACCTAACTATTCAAATTAGCATGTTGAC TTGAAACATATTCTAATTATTCTATTTTTCCTTTTGTAGACCAAGTTTGAACTTACAGTTGAGTGTTATTTTTTCAGATG ATGATTCCTGAGGCGTTTGCTATTGTTTTGGCACCAACTGATACCTCAAGGTCTACTACTAGTCTTTAATTTCATGATAT GGACAAATTCTCACCTATTCCTGCAATTGCCTTTGCACTTTTATACTAACTGTTGTCTTTCACCTTAAATTTGGATATCT ACCAATTCTACTACTAAGCATTCTTGTGTTTTTCTATCTTTTTTAAATAATTATTTACACTTATCTAGTTACATATTTGG GCAAAAAAGGGGGGCTGTATGAATGCGAGACATTTCAAATTAAACCAATTTATATGTTCCTTTGGATATGATTAGTAATA GGAACCTGTTATAGATCTAGTAGATCTAGAATGCTAAAGCACTTGCGCTAGCTTCTGTTTAACCACAATATAAGTCTATT TCTAAATACTGCAGTCATGCAATTTAAGAAAGAGTCACTCTCCATGTATTCACTAAGTTAATTTATCGGTTATGTTATGA TTTATGGTCTTATACAGTTGGTTATATATTGCAAAAGAATTAGATTTGGATCCCCTACAGTTAGGGTAATCTCGCATTCA TGCACTCAATTATTTGAGCCATCCTATATCAAAGATCAAATGGCTCACATTCTGAGTTACTAATGCAAGTTAATGTGAAT TGTCAAATCAACATTGACGACTAAAAGTAATTGTTTGCATGAATGCTAGATTTCCCTGACTATAGGGAATCCAAATTCGA AAATTTTATGTATGCTAAGAATTCTTAGCATATGCTGATAAAAGTATCTGGTTACTCAAATTTACTAATTTCCTCCAGGA GCTGTGGACTATTTCGCCTAACAGACCCTGATGGAATGGAGATTCTGAAAAATTGCCAGGAGAAAGGATTCCATCCACAC AAAGAACCAGATAATGGGAACCCTGTGTATGAACACTGCTCCAATGTGTACAAAAACTCCAATCTAAGGTTTGAAATCTT TGATTTACGCTAAAATTCACTTTGATAACAGCATACTCTATCCTATGGCAAATATATGAGTGTAATTACAGTAAGCATGT CGTAGGTAGTAGTTACTCATCGGAAAGAATAATGTTGTACAGTTGTTGTATTGTTTGGTTTAATCAATGCAATGTAATAA ATACGTTTGGTTCATCACTTCCTCAAGGAAGTTCATATTTATTTTGGATGCTGTAACTATGGATAGCACGATCTGTAGTC TAATTTGTAGACATTTAGGAGGCGTTTGTTAGAGGGTTATAAAATACATTCCCGGGAATGTGATGTGTGGGAAAGTAGAT ATCCACGTTTGGTAGGAGATTACAAAAATATATACCCAAGTATGATATATTCCCGGGTAAATTATTTGCACATGTTACCA TGGTGGTCCATTCCCAAGCTTGAGGGTGGGTATATCAAAGATACCCAGGCATGATGAGATCGTGGGATTGAATTTTGTAC TATAAAGTTCCATTTTGACCCTTTAATATGTTTTAATACCCACGTTTTATCCAGCAACCATTCCACATCCATTTCTGGTT TTTTTTAGTTGCATGTTGTTGCCTCCATTTGCATCTTCTACTTCAGTGATTTAAGGCAAATGTAGTCTAGTGAAAAATAT TTTGAAAAAGGGATAAGTTGTTTGTGACTTTTCATTTTGAGTTAATTAATAAAAAGATGCTACTGTTATAAAGTTTTTTT TGTTACAACTATTTTTTTTTAACTCTTGTTACAACTATTGTTATAAAGCTGTTTGTGCATTTTTA
Download Genomic Sequence

CDS sequence (LotjaGi2g1v0320500.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGAAAGAAAATATGGATATTGATCATCCTTACCAGATGTTCAAACAGTTCAATGAAGAACAGGATGCAAGTAACATGAA GATTAGAAATAATGAATCAGCAGAAAGCAGAGTTCAAAGCTTAAGGGTCACTGAAGAGGAAACAGCTAGGGTTTCATCAT GTCAATTAGGAGATTTGAGTAGTAGGTTGTGCCACTGCTCACTGAATTATTTAAAACCAGTTGCTGTTAAGGAAGCCTAT CGACGCTTCTTAGATAATAAAGTAACTCAGTCCTCACCTTCCCCTGCACTCTGCTTTGTGAAGACAGTGCCTCAAGATAC ACAAAATTCTCATATTACAGCTTTTAATTCAGGAGATGGATCCTCGACGTCAGATAATGAATCAACTTCATCAAATACCG TTCGGGATGTACATATTTCAATGCGATTGATGGAGGATTTTCTTGATCTTGCTAAGGAAAATACAGAAAAGGATCTGGAA ACTTGTGGTATACTTGGTGCCTTCCTTGAGAAGGGAACCCTCTATATGACTACTCTAATCATACCAAAGCAGGAATCAGC TTCTAATTCTTGTCAAGCTACAAATGAGGAGGAAGTTTTCAAAATCCTAAATGAAAGATCACTTTATCCTGTAGGATGGA TCCATACACATCCTTCTCAGAGTTGTTTCATGTCATCGGTGGATCTGCATACTCAACACTCATACCAGATGATGATTCCT GAGGCGTTTGCTATTGTTTTGGCACCAACTGATACCTCAAGGAGCTGTGGACTATTTCGCCTAACAGACCCTGATGGAAT GGAGATTCTGAAAAATTGCCAGGAGAAAGGATTCCATCCACACAAAGAACCAGATAATGGGAACCCTGTGTATGAACACT GCTCCAATGTGTACAAAAACTCCAATCTAAGGTTTGAAATCTTTGATTTACGCTAA
Download CDS Sequence

Protein sequence (LotjaGi2g1v0320500.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MKENMDIDHPYQMFKQFNEEQDASNMKIRNNESAESRVQSLRVTEEETARVSSCQLGDLSSRLCHCSLNYLKPVAVKEAY RRFLDNKVTQSSPSPALCFVKTVPQDTQNSHITAFNSGDGSSTSDNESTSSNTVRDVHISMRLMEDFLDLAKENTEKDLE TCGILGAFLEKGTLYMTTLIIPKQESASNSCQATNEEEVFKILNERSLYPVGWIHTHPSQSCFMSSVDLHTQHSYQMMIP EAFAIVLAPTDTSRSCGLFRLTDPDGMEILKNCQEKGFHPHKEPDNGNPVYEHCSNVYKNSNLRFEIFDLR
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR12947:SF9
22 311 290 1.8E-122 –
PANTHER
PTHR12947
22 311 290 1.8E-122 –
MobiDBLite
mobidb-lite
110 133 24 - –
Gene3D
G3DSA:3.40.140.10
116 311 196 2.0E-72 –
Pfam
PF01398
133 241 109 2.2E-19
IPR000555
CDD
cd08066
135 311 177 3.56696E-99 –
SMART
SM00232
136 264 129 1.5E-10
IPR000555
SUPERFAMILY
SSF102712
137 267 131 3.92E-20 –
ProSiteProfiles
PS50249
137 267 131 29.48
IPR037518

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi2g1v0320500.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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