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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0321600 |
| Transcript ID | LotjaGi2g1v0321600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | YABBY transcription factor; TAIR: AT1G23420.2 Plant-specific transcription factor YABBY family protein; Swiss-Prot: sp|Q9LDT3|YAB4_ARATH Axial regulator YABBY 4; TrEMBL-Plants: tr|A0A0L9US49|A0A0L9US49_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0321600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:79639548..79642234) extracted from Lotus japonicus Gifu genome v1.2.
ATCATCTCTCTATCACTTCTTTCTCTTCCTCTTTCACACACACATACTCTCATCCCCACATTCAGAAAGACACCATGTCA ACACTGAACCATCTTTTTGATCTTCCAGAACAGATATGCTACGTGCAATGTGGATTCTGCACCACCATTTTAATGGTAAT GAGTTTTTTTGGTCACTAAAACTCGAACTGCACTTCTTAATATGTTTATTTTGTTTTGATACCTCTTTCTGCATTGCACT TTTTTCATGTTTCCAAATTTGAATTCTGAGATGCAGGTTAGTGTCCCATGCAGCAGTTTGTCAATGGTGGTGACAGTAAG ATGCGGACACTGCACAAGCCTCCTCTCTGTTAACATGATGAAAGCTTCTTTTGTTCCATTCCACCTTTTAGCATCTCTTA CTCATCTTCAGGTGATAGATTACCTTACCCTTACAAATTCTATGTTTATTTACTTTAGTTGTTCTAGTGAGTCCAATGAT CCACATACTTATATTAAATACGTAGGTGTTTGTATCAGAGTGTGTTTGTATAAGCTTATTTTTCCTCATAATCAATTATG GTACTTGAAAGCTACTGACATAAGCTTCTCCCCATAATTGATTCTAGCTTTAGAATCAATAGTAGAAATTTTTTCAAACA TGCACATAATGGTTTTTTTAACTCTAAATACATTTGTGATTGCCTCCACTCTCCAGCCAAAAGAAAGTAGTGCAGAAGAA GATGCAAACATGACATTTAACAGCCATAGTGGTGCATCCATGATGACCTATTCTGATTGTGAGGAAGAGGATCTGATTCC TATGAGCAATTTTGTGAATAAACGTACGTAAGGCAATGATAACTTCAATAAGAAGAAGATGAGTTCCTAAGTTTAAAGCT AGTAAATTCATATTTTCTCTATATTCATGACTTTGATGAATGGACTCTCTGCAGCCCCAGAGAAGAGACAGAGAACACCA TCAGCTTATAACCGCTTCATCAAGTAATGGTTCACTAAACAAAGTAGTATATACCATAAGTTTTTAATTTTGAATTCTAA TGTGAGCATTGTTTTAATGCAGAGAAGAGATTAAAAGGCTCAAGGCTGAAAATCCTGACATGGCTCACAAAGAAGCTTTC AGTACAGCTGCTAAAAATGTAAGGCCTTATTTTCTAAACTGCTTATTAGTTTAACTCACTTGTAAGAGTGGCGAGATTAT GTAAAGATAGATATTATTAAAAGCATGATCCTGAAAGAAGTTGTCATGTTCAGTGGGCCAATTTCCCTCCAACTCAATGC AAAGGAGATGAAGAGGGAGGTAGCCAGAATGATCAACTTGCGGATCTTGACTCCCATGTGGACCCTCTTGATGATGAGGT AGGATCACAACTATTTGAAAAACCTTGTAGTTTCTTCAATTATTAAGCAATATGGTTATGTTCAAAAAAAAAAGAAGCAA TATGGTTCTCTTATAACTGAAATAAAATAGTTTTAGCTAATTAATACTTGTTACTAGTAGGAGCTTCTTTGGTTTGGCAC TGTGTGCATCTTTAGTGTTACTTGTCCCTTTCAAATATCACAGGGGAATAATAGAGGTAGGCTCCATTAATTCAATGTCA AAGACTTATCTTATGGTGGTCGCCAATCAATGTGACAATAGAAATTAACGCAGAGTCTCAATAAAACAATAATAATCAGG GGCGAATGTTGTGTATGCTATTGATTGACATGGCATGCTCAAAACGATTATACTTTTAACATTTAGATAATTTGAACTTA AGCTTAACCTTTTTAAAAGCTTAAACTGTAGTAGGTTAAACCACTTGGTCATAAATTTAGGAACCAACTATCTTAAAAGC TTAAGTTGTTGAGGTAAATGACACATGAATGAATTTATATTATATTTCTAACACAATTCTATGTACTCGTCATTCACAAT TAACCTAGTAGGTGCTAGAACAATGAGCAACAAGAAATTTGAAGAAGCAGGATCTAAAATACCATTAACACTTCACTAAA TAAGACAACATAGTAACACTAACCTAAAATCAGAGTCTTGTGATGTGTGAAGCTAGTCACTTTCCTGGAACTGTCATTCA TATGTTCTAACTTTCTAGGGTAAAGTAGATGTACTCACCATTCAACTTTAAGCCTAACCTTTTTTTTCTATTCTAGTACT TCACCCCTGCATCACTTCAATGTGTGGAACTTTCAGGTCAATGAAGAAGGACAAGGTTTCCGAGGAAGAAAGGTCCCAAG GAACTCTATCTTGGAAAGGACACCGTTTGAGTGAAGGAACTTCAGCAATGTGACATAGCAAGAAAGCTTTTTTCTGTCTT ACATAAAAAGTTTCGTCTAAGTCGTTTTCCTTATGAAGAAAAGATGTCCTTGGTAATGAAAACGAATTAAATAGGGTTGA GAGATGACAATTTGAGACTTTAGGAAGTGTTTAATAGTTTATAGTTTTATCTGACACCTTTCTGTTCTAGCATGCCAGCT CCATCGACCATCAACTAGTCTTTGGGATCACATAAATGTTTGTTTTTGTTAACAGTTACTTGATATTAATTCTCAGACAT GGTGCATGTTATCAAGGGCTAGTTATTTTTGGCTTTTGTTATGAACAGAATTGAAGAAGCATCACTTGATGATGTAGTAA CTATCTCGGTATTTTGATGGTTGAGAGTTGAGACTATCTTACTCCCC
CDS sequence (LotjaGi2g1v0321600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCAACACTGAACCATCTTTTTGATCTTCCAGAACAGATATGCTACGTGCAATGTGGATTCTGCACCACCATTTTAAT GGTTAGTGTCCCATGCAGCAGTTTGTCAATGGTGGTGACAGTAAGATGCGGACACTGCACAAGCCTCCTCTCTGTTAACA TGATGAAAGCTTCTTTTGTTCCATTCCACCTTTTAGCATCTCTTACTCATCTTCAGCCAAAAGAAAGTAGTGCAGAAGAA GATGCAAACATGACATTTAACAGCCATAGTGGTGCATCCATGATGACCTATTCTGATTGTGAGGAAGAGGATCTGATTCC TATGAGCAATTTTGTGAATAAACCCCCAGAGAAGAGACAGAGAACACCATCAGCTTATAACCGCTTCATCAAAGAAGAGA TTAAAAGGCTCAAGGCTGAAAATCCTGACATGGCTCACAAAGAAGCTTTCAGTACAGCTGCTAAAAATTGGGCCAATTTC CCTCCAACTCAATGCAAAGGAGATGAAGAGGGAGGTAGCCAGAATGATCAACTTGCGGATCTTGACTCCCATGTGGACCC TCTTGATGATGAGGTCAATGAAGAAGGACAAGGTTTCCGAGGAAGAAAGGTCCCAAGGAACTCTATCTTGGAAAGGACAC CGTTTGAGTGA
Protein sequence (LotjaGi2g1v0321600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSTLNHLFDLPEQICYVQCGFCTTILMVSVPCSSLSMVVTVRCGHCTSLLSVNMMKASFVPFHLLASLTHLQPKESSAEE DANMTFNSHSGASMMTYSDCEEEDLIPMSNFVNKPPEKRQRTPSAYNRFIKEEIKRLKAENPDMAHKEAFSTAAKNWANF PPTQCKGDEEGGSQNDQLADLDSHVDPLDDEVNEEGQGFRGRKVPRNSILERTPFE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 207 | 207 | 4.8E-87 | – | |
| PANTHER | 1 | 207 | 207 | 4.8E-87 | ||
| Pfam | 11 | 164 | 154 | 1.4E-64 | ||
| SUPERFAMILY | 110 | 163 | 54 | 1.7E-9 | ||
| Gene3D | 111 | 167 | 57 | 3.8E-7 | ||
| CDD | 121 | 164 | 44 | 8.35398E-6 | – | |
| MobiDBLite | 158 | 216 | 59 | - | – | |
| MobiDBLite | 182 | 209 | 28 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Multicellular organism development | The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult). |
Expression pattern of LotjaGi2g1v0321600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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