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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0321900 |
| Transcript ID | LotjaGi2g1v0321900.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ADP-ribosylation factor, putative; TAIR: AT5G05670.1 signal recognition particle binding protein; Swiss-Prot: sp|Q54XX1|SRPRB_DICDI Signal recognition particle receptor subunit beta; TrEMBL-Plants: tr|I3S7G3|I3S7G3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0321900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:79665944..79669142) extracted from Lotus japonicus Gifu genome v1.2.
TCTATTATTTAATATCCACCTCGTTATTCTCCTCCTCTTCTATTCTATTTTTATTATACCAAACAGTCTATTAAACCCAC ATTATTTCTCACAATTTTCTCTCATTTCACCTTCTTTCTTCTCTATTCTTTATTTCTCTCCTAAACCAAACATAGTCTTA CTTTGCCTAGTTAAAGAGGAATGAAACAATTAACGGTGTGAGAAGCAGTTGCAAACAAAAATTAACGGCGTGAGTATTTA TCCTAAACGACACACTATTACTGCCGTTTGTTCTCATATTTCAAAAGCCCTCGATTCCAGGTCGACACGCCAGATCTGCA TTCGACAACCACCGCGTACGGCGGAAGAAACTTCCAGGCGACGGAATTCCGAGCACCGAACGCCGCACCATAACGAAACC CTAGATTTCACAATGCAAGAATTAGAGCATTGGAAGGAAGAGCTTTCTCGCCTATGGCTCACCGCTTCCGATTATCTTCG CCAGGTCCCACCCGAACAGCTCTACATCGCTGCTGCTATCGCGGTTTTCACAACCCTGCTTCTTCTCTCTCGTGAGTTCT TCTTTTCGTTGTTGAATTCCCGATTCTCTTGGTTGATTGTGTGTTGTGAGTGTTGATTGATGGTTTTGGTTTTTGTGTTT GCAGTACGGTTGTTCAAGCGTGCAAAAACTAACACTGTTGTGTTGACGGGGCTTACTGGGAGTGGCAAAACCGTTCTCTT CTATCAGGTAAGCTCCCATTGACGTTTGTGGTTTCATTGCTTTGTGTATTGATCCTCAATTCGGTTTAGTATAGTTCGTG GATTGGCATTTGGTGTTTTTATTTCCTGATTGAATTTTGGTTTGATGGGTATAGAGTTGTTTTGAGTTCATTTTCACTAT GTGCTTAATTTGCTGCGTATTCGCGAAACCAAAATTGTCTGTAGGATTCTGCTTGATGTTTCAGGTCTTAGGGAATTGTC TGTATTTGATATATACAGTTAATGAAGTGTTTGTAGGATTCTGCTTGATGTTTCAGGTCTTGGGGAATTTTGGTCTAAAA TATTGGGATTATACATGAGTGCTTGAAAGAAATAAATACAAACAAGTTGTTTTCGGTTCAAACCCTAATTATGCCGTTGT ATATTCCTTTTGTTCGAAAAGGGTTAGTCCTTTGTTAGTATCATTGTGTTTTTATTAATTCTGCAAACAAGAAATAAATT GGTTTTTTAAGGTTTAACCCTTTGTGAGGGTTTGGTCATATTGCTTAAAAGTTTTTTTGAACTGTATAATGAAGTTCCTT CGTTGTTAGTTGTTATGAGGGAAAAGAAGAGTCATGGTTATGTTGGGTGGTTGGTTAAAAACTGGAAACGTCTTGGTATA TTAGCAGTTGCTATTACATTTACATGGTGTGGGGTATAATCAGATAACTAGTTAGTTTTCTTTCTAACTTAACTTTCTTG GCACACTTTTTATGCCTGTTTCAGCTTAGGGATGGCTCTACTCATCAGGGTACTGTTACATCTATGGAACCTAATGAAGG CACTTTTATTCTTCACAGTGAGACAACAAAGGTATTTTAGCCTCCTGCTGTCAAATTCTTGCTTGAATGTACAGTTTTAA CATCTTTTTTGGGGTATGTGGAAATTTCTGCTTCTCATCCTTATGAAAATAGGATATTCACCTTTTATTGTTGATGGAAG AAACTCGTTTGTTGTCAAGTTAGTTGAAATTATATCTAGTTTTCTTTTGTTTGTTCTGTTAATTGTGGAATCAGACTTAC AATATACCAAAATATTGTCTGACGTTTCTTTGATTTTGACAGAAGGGCAAGGTAAAACCTGTTCATATTGTTGATGTTCC TGGCCATTCTCGACTTCGACCCAAACTGGATGAGTACTTGCCTCAAGCAGCTGGCGTAGTCTTTGTGGTTGATGCTGTTG ACTTCTTACCAAATTGCCGTGCTGCTTCAGAGTAATTCCTTCCTTTCAATTGCTAGATTACCATCTTTTTATGAAGTAAC AATTTCTGTCAATATTATGGTGGGCCACTTGTAATCCATGTTAGGAAGTGTTAAAATACTCTTGACAGATTATTATATCT AAGTGACCATTTCTAATTCTCACTATTCTTGAGGAAGAAGGGATATTAGTACTTACTAAGATACTAACACTTCTATTACG TTTTAGGTACCTATATGATATATTGACTAAGGGAAGTGTGGTAAAGAAGAAGATCCCACTGCTTATTCTCTGCAACAAAA CAGACAAAGTCACTGCTCATACAAAGGAATTTATCCGCAGACAGTTGGAGAAGGAAATGTATGGCTTCAAATTCTAAAAA ATTTGTCCTCATAACTTTTACTCAATGCTTGATCGCCTCATTCTTTTCATTATTTCATTTGGCAACTCTATTGTTGACTC TTATTATCCTTCTCCAGTGACAAATTACGGGCATCAAGAAGTGCAGTGTCAGATGCTGACGTTACAAATGAGTTCACGTT GGGGGTACCTGGTGAGGCATTTTCTTTTACCCAGTGCTGTAACAAAGTTACCACTGCAGATGCTTCTGGTTTAACTGGAG AGATATCTCAGCTGGAAGAGTTCATCAGAGAATATGTGAAGCCATAAATGGATGTTATGTTTGAACTTAGATTTTTTTGT ATTGAATTTGTTATGAATGGGGTTAGTTGTTACTTCTCAAAACTCAGCACTGCCTGGATAAGCAGAGGAAAATGAAGTGA GGGGGGCTCTGGGGAAGTTGTCAGTCAGTATGTTGGAATGAATGAGGATTGGCTTTACTGGAAGTCCTGATATATTGGTT CAATTAATTGTACAAGTACTTGGATTCACTTTATTTGCTCTCCCTTTGCCCAGGCATTTCTTAACCCCTATTGCCCAACT TTATTTTCAGATTGTTTTCGCTGCTCTTCCTTTCTACTTCCATTTTTCCACTGGGTGATAATCAAGAAAATTACAAAGGT CTTTTACTGCACTATGCAGTTTCAAATATCATTTGGCCAATGTCACGTATTTGGTTTTAAATTAGAACCTTAACTTCCAC CCAAAGCTATTATATTGGTGGCTTTAAAGCTATTAGACAAGCTTTTGTCAAAATCTTGGCTTTAGACTTCTCCAACATCC AACCAAAAAAGCATGTGTTTGGTGGTTAATAGTGAATTGTTGTTTTGGGAAAACTTGGAATGTGAATGTGAGTTTTTGC
CDS sequence (LotjaGi2g1v0321900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAAGAATTAGAGCATTGGAAGGAAGAGCTTTCTCGCCTATGGCTCACCGCTTCCGATTATCTTCGCCAGGTCCCACC CGAACAGCTCTACATCGCTGCTGCTATCGCGGTTTTCACAACCCTGCTTCTTCTCTCTCTACGGTTGTTCAAGCGTGCAA AAACTAACACTGTTGTGTTGACGGGGCTTACTGGGAGTGGCAAAACCGTTCTCTTCTATCAGCTTAGGGATGGCTCTACT CATCAGGGTACTGTTACATCTATGGAACCTAATGAAGGCACTTTTATTCTTCACAGTGAGACAACAAAGAAGGGCAAGGT AAAACCTGTTCATATTGTTGATGTTCCTGGCCATTCTCGACTTCGACCCAAACTGGATGAGTACTTGCCTCAAGCAGCTG GCGTAGTCTTTGTGGTTGATGCTGTTGACTTCTTACCAAATTGCCGTGCTGCTTCAGAGTACCTATATGATATATTGACT AAGGGAAGTGTGGTAAAGAAGAAGATCCCACTGCTTATTCTCTGCAACAAAACAGACAAAGTCACTGCTCATACAAAGGA ATTTATCCGCAGACAGTTGGAGAAGGAAATTGACAAATTACGGGCATCAAGAAGTGCAGTGTCAGATGCTGACGTTACAA ATGAGTTCACGTTGGGGGTACCTGGTGAGGCATTTTCTTTTACCCAGTGCTGTAACAAAGTTACCACTGCAGATGCTTCT GGTTTAACTGGAGAGATATCTCAGCTGGAAGAGTTCATCAGAGAATATGTGAAGCCATAA
Protein sequence (LotjaGi2g1v0321900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQELEHWKEELSRLWLTASDYLRQVPPEQLYIAAAIAVFTTLLLLSLRLFKRAKTNTVVLTGLTGSGKTVLFYQLRDGST HQGTVTSMEPNEGTFILHSETTKKGKVKPVHIVDVPGHSRLRPKLDEYLPQAAGVVFVVDAVDFLPNCRAASEYLYDILT KGSVVKKKIPLLILCNKTDKVTAHTKEFIRRQLEKEIDKLRASRSAVSDADVTNEFTLGVPGEAFSFTQCCNKVTTADAS GLTGEISQLEEFIREYVKP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 29 | 29 | - | – | |
| PANTHER | 16 | 259 | 244 | 2.4E-124 | ||
| PANTHER | 16 | 259 | 244 | 2.4E-124 | – | |
| Phobius | 30 | 50 | 21 | - | – | |
| TMHMM | 30 | 47 | 18 | - | – | |
| ProSiteProfiles | 48 | 253 | 206 | 10.356 | – | |
| Gene3D | 50 | 257 | 208 | 1.3E-59 | – | |
| Phobius | 51 | 259 | 209 | - | – | |
| TIGRFAM | 54 | 195 | 142 | 3.6E-12 | ||
| Pfam | 54 | 234 | 181 | 4.1E-37 | ||
| CDD | 56 | 256 | 201 | 1.15874E-55 | ||
| SUPERFAMILY | 58 | 205 | 148 | 5.53E-24 | ||
| Coils | 190 | 210 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | GTP binding | Interacting selectively and non-covalently with GTP, guanosine triphosphate. |
Expression pattern of LotjaGi2g1v0321900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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