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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0321900 |
| Transcript ID | LotjaGi2g1v0321900.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | elongation factor family protein; TAIR: AT5G05670.1 signal recognition particle binding protein; Swiss-Prot: sp|P47758|SRPRB_MOUSE Signal recognition particle receptor subunit beta; TrEMBL-Plants: tr|I3S7G3|I3S7G3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0321900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:79666536..79668822) extracted from Lotus japonicus Gifu genome v1.2.
TTCGACAACCACCGCGTACGGCGGAAGAAACTTCCAGGCGACGGAATTCCGAGCACCGAACGCCGCACCATAACGAAACC CTAGATTTCACAATGCAAGAATTAGAGCATTGGAAGGAAGAGCTTTCTCGCCTATGGCTCACCGCTTCCGATTATCTTCG CCAGGTCCCACCCGAACAGCTCTACATCGCTGCTGCTATCGCGGTTTTCACAACCCTGCTTCTTCTCTCTCGTGAGTTCT TCTTTTCGTTGTTGAATTCCCGATTCTCTTGGTTGATTGTGTGTTGTGAGTGTTGATTGATGGTTTTGGTTTTTGTGTTT GCAGTACGGTTGTTCAAGCGTGCAAAAACTAACACTGTTGTGTTGACGGGGCTTACTGGGAGTGGCAAAACCGTTCTCTT CTATCAGGTAAGCTCCCATTGACGTTTGTGGTTTCATTGCTTTGTGTATTGATCCTCAATTCGGTTTAGTATAGTTCGTG GATTGGCATTTGGTGTTTTTATTTCCTGATTGAATTTTGGTTTGATGGGTATAGAGTTGTTTTGAGTTCATTTTCACTAT GTGCTTAATTTGCTGCGTATTCGCGAAACCAAAATTGTCTGTAGGATTCTGCTTGATGTTTCAGGTCTTAGGGAATTGTC TGTATTTGATATATACAGTTAATGAAGTGTTTGTAGGATTCTGCTTGATGTTTCAGGTCTTGGGGAATTTTGGTCTAAAA TATTGGGATTATACATGAGTGCTTGAAAGAAATAAATACAAACAAGTTGTTTTCGGTTCAAACCCTAATTATGCCGTTGT ATATTCCTTTTGTTCGAAAAGGGTTAGTCCTTTGTTAGTATCATTGTGTTTTTATTAATTCTGCAAACAAGAAATAAATT GGTTTTTTAAGGTTTAACCCTTTGTGAGGGTTTGGTCATATTGCTTAAAAGTTTTTTTGAACTGTATAATGAAGTTCCTT CGTTGTTAGTTGTTATGAGGGAAAAGAAGAGTCATGGTTATGTTGGGTGGTTGGTTAAAAACTGGAAACGTCTTGGTATA TTAGCAGTTGCTATTACATTTACATGGTGTGGGGTATAATCAGATAACTAGTTAGTTTTCTTTCTAACTTAACTTTCTTG GCACACTTTTTATGCCTGTTTCAGCTTAGGGATGGCTCTACTCATCAGGGTACTGTTACATCTATGGAACCTAATGAAGG CACTTTTATTCTTCACAGTGAGACAACAAAGGTATTTTAGCCTCCTGCTGTCAAATTCTTGCTTGAATGTACAGTTTTAA CATCTTTTTTGGGGTATGTGGAAATTTCTGCTTCTCATCCTTATGAAAATAGGATATTCACCTTTTATTGTTGATGGAAG AAACTCGTTTGTTGTCAAGTTAGTTGAAATTATATCTAGTTTTCTTTTGTTTGTTCTGTTAATTGTGGAATCAGACTTAC AATATACCAAAATATTGTCTGACGTTTCTTTGATTTTGACAGAAGGGCAAGGTAAAACCTGTTCATATTGTTGATGTTCC TGGCCATTCTCGACTTCGACCCAAACTGGATGAGTACTTGCCTCAAGCAGCTGGCGTAGTCTTTGTGGTTGATGCTGTTG ACTTCTTACCAAATTGCCGTGCTGCTTCAGAGTAATTCCTTCCTTTCAATTGCTAGATTACCATCTTTTTATGAAGTAAC AATTTCTGTCAATATTATGGTGGGCCACTTGTAATCCATGTTAGGAAGTGTTAAAATACTCTTGACAGATTATTATATCT AAGTGACCATTTCTAATTCTCACTATTCTTGAGGAAGAAGGGATATTAGTACTTACTAAGATACTAACACTTCTATTACG TTTTAGGTACCTATATGATATATTGACTAAGGGAAGTGTGGTAAAGAAGAAGATCCCACTGCTTATTCTCTGCAACAAAA CAGACAAAGTCACTGCTCATACAAAGGAATTTATCCGCAGACAGTTGGAGAAGGAAATGTATGGCTTCAAATTCTAAAAA ATTTGTCCTCATAACTTTTACTCAATGCTTGATCGCCTCATTCTTTTCATTATTTCATTTGGCAACTCTATTGTTGACTC TTATTATCCTTCTCCAGTGACAAATTACGGGCATCAAGAAGTGCAGTGTCAGATGCTGACGTTACAAATGAGTTCACGTT GGGGGTACCTGGTGAGGCATTTTCTTTTACCCAGTGCTGTAACAAAGTTACCACTGCAGATGCTTCTGGTTTAACTGGAG AGATATCTCAGCTGGAAGAGTTCATCAGAGAATATGTGAAGCCATAA
CDS sequence (LotjaGi2g1v0321900.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAAGAATTAGAGCATTGGAAGGAAGAGCTTTCTCGCCTATGGCTCACCGCTTCCGATTATCTTCGCCAGGTCCCACC CGAACAGCTCTACATCGCTGCTGCTATCGCGGTTTTCACAACCCTGCTTCTTCTCTCTCTACGGTTGTTCAAGCGTGCAA AAACTAACACTGTTGTGTTGACGGGGCTTACTGGGAGTGGCAAAACCGTTCTCTTCTATCAGCTTAGGGATGGCTCTACT CATCAGGGTACTGTTACATCTATGGAACCTAATGAAGGCACTTTTATTCTTCACAGTGAGACAACAAAGAAGGGCAAGGT AAAACCTGTTCATATTGTTGATGTTCCTGGCCATTCTCGACTTCGACCCAAACTGGATGAGTACTTGCCTCAAGCAGCTG GCGTAGGAAGTGTGGTAAAGAAGAAGATCCCACTGCTTATTCTCTGCAACAAAACAGACAAAGTCACTGCTCATACAAAG GAATTTATCCGCAGACAGTTGGAGAAGGAAATTGACAAATTACGGGCATCAAGAAGTGCAGTGTCAGATGCTGACGTTAC AAATGAGTTCACGTTGGGGGTACCTGGTGAGGCATTTTCTTTTACCCAGTGCTGTAACAAAGTTACCACTGCAGATGCTT CTGGTTTAACTGGAGAGATATCTCAGCTGGAAGAGTTCATCAGAGAATATGTGAAGCCATAA
Protein sequence (LotjaGi2g1v0321900.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQELEHWKEELSRLWLTASDYLRQVPPEQLYIAAAIAVFTTLLLLSLRLFKRAKTNTVVLTGLTGSGKTVLFYQLRDGST HQGTVTSMEPNEGTFILHSETTKKGKVKPVHIVDVPGHSRLRPKLDEYLPQAAGVGSVVKKKIPLLILCNKTDKVTAHTK EFIRRQLEKEIDKLRASRSAVSDADVTNEFTLGVPGEAFSFTQCCNKVTTADASGLTGEISQLEEFIREYVKP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 29 | 29 | - | – | |
| PANTHER | 16 | 135 | 120 | 1.1E-99 | – | |
| PANTHER | 16 | 135 | 120 | 1.1E-99 | ||
| TMHMM | 30 | 47 | 18 | - | – | |
| Phobius | 30 | 50 | 21 | - | – | |
| Gene3D | 50 | 137 | 88 | 6.0E-21 | – | |
| Phobius | 51 | 233 | 183 | - | – | |
| Pfam | 54 | 133 | 80 | 2.2E-12 | ||
| SUPERFAMILY | 58 | 179 | 122 | 2.6E-16 | ||
| PANTHER | 137 | 233 | 97 | 1.1E-99 | ||
| PANTHER | 137 | 233 | 97 | 1.1E-99 | – | |
| Gene3D | 138 | 231 | 94 | 3.1E-18 | – | |
| Coils | 164 | 184 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0321900.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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