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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0323300 |
| Transcript ID | LotjaGi2g1v0323300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Polygalacturonase; TAIR: AT3G26610.1 Pectin lyase-like superfamily protein; Swiss-Prot: sp|Q949Z1|PGLR4_ARATH Polygalacturonase At1g48100; TrEMBL-Plants: tr|A0A0B2Q3Z1|A0A0B2Q3Z1_GLYSO Polygalacturonase; Found in the gene: LotjaGi2g1v0323300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:79831741..79835928) extracted from Lotus japonicus Gifu genome v1.2.
CTTCCCTCTCTCCTCATACCTCCTTTCTCTCTCCAATTGGACGTCCACGTAAGCCTCCTCCATTAAGAAATAAACGGTAG GACTAACGTTGCACACGACCTACAACGTCGGGGACCATCCATGTAATTAAATTAGGTGGGGGACCAAAATCGTAGTATTG GTAAAAGTCGGGGACCAAAGTTGCAATTAAGCCAAAACAACTTTTCATCTCTCACTCTCCATAACCCTAGCCGCACATCT CCTTCCTCCCTCTTCTTCTTCTTCCTCCCTGCGTTCCATCCCTCTTCTTCTCCGGCCACATTAACAACCGTCTCGTCCTC TCTCCACCTCTCTGCCGCCATCACCTTCTTCCTTTTCTTCTCAAATCATTTTCTTTTCTGCACTTGTGTGACCAACAGGG CCACCACCTCCGCCCCTCTCTTCTTCTTCTCCAGGCCTAAAACCCCCAACCTGCCACCCTCAGGCCACGATCCGGCCACC ACCGGCCCTGTTTCATGCTTTCAAGGCCTTCAATCTCGCAGAGGAGTTTCCTTTCCTCACATGCAAAGCGATCTGAGGTG AGTTTGTGTTGTAATTTTTTTTCTGTTGATTTTCGTCTGTTCAATTAGCCTTCTATTGAAACTCTCTCATCTCTTTGCAG ATCGGAGCTTCTCAGTCAAGATCAAGATTATGTTTTTTTCTTGTTTTTTTTTTTAAAAAAAAACCCTGGTGTTCTATTCT GTAAAATCCATGTTCTGTAATAAAGTTGTTATTTTGGTGTTCTGTTCATGTTGTTAAGGTTGTGAATTTTCCATCTTCCT TCATCTGTTAATTTTCCCTCTGAAATCTGTTGAGCATGTGAGAGAAAATATCATTTGTTTAAGGCTAAGAAACCAAAAAG CAGAGTTCCTTGCACAAGGAACTCTGCACTGTAGTTAAGAACCCAAAACTGCCACCTAGATCAACTCCAATGCTGCAAAA AATAAGAAACGGTTTCTTAGCACCTCCAACCTGGTTAATAAACCAGCGTTGGAGTTGCTCTTAGTGATTTAACAAACTTT TGAATAAAAAAAGCGCACCCTTGGAAAACCAACACTTTTCCTACCATATTCCACTATATAAGCTGCACAGAACTACCATA CTACTTCCCTGTATGAAACACAATACACCTGAAATTGCTAGAATTATAGCTGCTGCTAGTGTTGTTTCTGAAAGTGACAA ACAAAGACCCTGCTGAAACAATGAAGAGGAACACAAGTTCTTCCCTACTCTTTTTCATGTTCTTGTTGGTGAATGTCTTT GTCACCTTCACTATAACTTCTGTGGAGGCAAGGAAGACTAATAACACCATCAAGAAAAAACTTCATAAAGGTCACAAAAA TAGTAGCAATGGCCACACTAGAGGCTCACATGTTCCACGTCCACCGCCAGCTCCTCTTCCTCATCATGGTCCTCATCCAA ACCAAGTGAACCCTTTTGATATTATGTATTTTGGCGCCAGGGGAAATGGAATTTCTGATGATTCAGAGGTAATTATTAAA ATCCCTCAGAACTTTTAGATAGAATGATTATGAGGAGAAGTTTTCTGTATGTAGCTTCTGGTTGCCATAATTGATTATGT GGAAACAGAAGCTGGTCTTAACATGCTATTATAACTTTGTCTATAATGTTCATTAACCAGGCACTTCTTGCTGCATGGAA TGGTGCTTGCAAAGTTGCTGGAGCTACAGTTAAAGTTCCACCACAACTCAAGTTTCTCATCAAGCCTGTTACTTTCCAAG GCCCTTGTATGCCTGGCCTTACTCTTCAGGTTCTCTTTCATTTCCTTTTCTTAATCATGCCTAAGATAGTCACAGAAAAG TGTATATTTTTTGCATGCAAATATATTAGTATTATATGTCACATTTTGCAAGTTAAAATGTTTAATGTATTAATATGAGG TTAGTGTGTGATATAAATTTGCAGATAGATGGAACTGTATTGGCTCCTGCTGAACCATCATCCTGGGCAAAATCCAATTT GTTTCAGTGGATAAATTTTAAATGGTTGCAGAACTTCACCATCAAAGGCTCTGGTACTGTTGATGGCCAAGGCTTCAACT GGTGGGGCACTTCATCAGAACTTTATGATATGCAGGTAATAAAATAACCCTCAAGTATTCAAGTATCTGTGACAAAGTTC ATATAAATTTCATAACAAAAAGCTCACTTTTTTATCATGAAATCTTGCAGAAAAGCTACTCTGAAAATCTTGTAATGAAG CCAACTGTAAGATTTTCCTTATTCCCTAACAACCTAATGTGTCACTTTGAGTGTATTGTTTTTTAGTTTTAGTTTCTGAT TGAAAGTTTCTCATGGATCTTGTTTGATGTTGTCTATAACCAGGCTATAAGATTTTACTCTAGCAACTTTGTGACAGTTC AAGATATTAGAATCATAAACAGTCCTCTGTGCCATCTAAAATTTGACAACTCAAAGGGCATCAAAGTTAACAACATCACA ATATCTTCCCCTGGGAACAGCCCAAATACTGATGGCATTCACTTGCAAAACACTCAGGATGTGGAAATTCAGCATTCTGA TATTGGAACTGGTAAGCCATTAATTTAATTCATTTCAAATGACCTTACATTCAACTTCTATCTGGAAAAGTAAGAATATA GTAAATTGTTAAATCATGGCCAATATGGTGCATTGCCCACTTTGACTTGTTGGGCTTAAAGATGACAAAGAATGATTGAC AGAGAGACCCTTTTGAAGTTGAAACGGTAAACTGTCGCAGCAACTAACTTTTGAAACGTGCAGATTATAAAATTATGCTA ACACAGCTGAACTAACTTTAACTTTTTTAGGTATCTAACTGAAGCCTACTTATTTTATATTATATAGAGCATATAATATT GATACTTTTTTATCTTAATTTATTTATTATCAGGAGATGACTGTGTGTCCATCCAAACCGGTTGCTCTAATATTCATGTC CACCACATTAAATGTGGCCCTGGACATGGTATAAGGTAAGAAAAAAATACAAAAGGCTTAGCCAGTACAAGTTGGTGTTT TAATTTTCACTTTTAACAAACCAGTGATCATAAATAACTGGTTTAATTTTCTGCTTTTAGTTTAGGAGGATTAGGAAAAG ACAAGAGTGTGGCATGCGTCTCTGACATCATTGTTGAGGATATCTCAATGAAAAATACTATGTATGGAGCAAGGATCAAA ACATGGCAGGTACTATTAGCATAATTACTTTTGCTAGTAAACCAGGTTAATAAAGTGGAGCGAAATCCTCATTCCTCATT TAGTGTTCCATTCTCTGTCCCACCAATCAAACTGTGTCATGTCATTTAAAAATTATCAATCTAAGGTTATAATTGTCATA CTCATGACTACACGACATAATTTGATTGGTGGGATAGAGAACGAAACACCAAATGAGGATTAATGATCTTCATCATATGT CTTATTTGGCATTAATTTGAGTCTTTTTTCTTTGTACAGGGAGGCATTGGTATGGTTAAAAATGTGACATTTTCCAGAAT CAGAATCTATGATGTTCTGTTTCCAATAATGATAGATCAATACTACTGTGACAAGCAAATGTGCAAGAACCAGACAGGAA CAGTTGTTATTTCTGGTGTGAATTTTGATCAAATAAGTGGAACTTATGCAGTGCAGCCTGTGCATCTAGCCTGCAGCAAT TTCATACCATGCACAGATGTTGATTTAACTGATATTCAACTTAGGCCCTCTCTCAAATATCGAGGTTCACAACAAGCTAC GTGCTGGAACTCTTATGGTAAATCACAAGGCCCCTTGGTGCCAGCAAGCATTGATTATTGTTTGAGAAGTGGTGGTGGAT TGATCAAGAGGATAGCAAGGTCACATGATTATAGTGCATGTTACAGATAATAGATGTGACCTTTAGGCTTTAGATATAGC ATGTTTGGAATTGATTTTGTCTTTAGAACCAACACTAGAAGGATTCACAAACATATCCTTAAGCCTCTCTTCCACAAAGT TTTTAACTAGGAGAAGGTGATGATGGTGTAATTTAGCTCGAGTTCTGTTTTTTTCTTTTTTTACATTAGAATGTGCTAAT AGACTTTGTTTACTGGTTCATCAGTGTTAGTGACAGAGGATAGAGACAGAAAGCTAATTGTCTTTTTTTTTTTCGAAAAG AAAACTGATTATATAGATAAGAAAACAG
CDS sequence (LotjaGi2g1v0323300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGAGGAACACAAGTTCTTCCCTACTCTTTTTCATGTTCTTGTTGGTGAATGTCTTTGTCACCTTCACTATAACTTC TGTGGAGGCAAGGAAGACTAATAACACCATCAAGAAAAAACTTCATAAAGGTCACAAAAATAGTAGCAATGGCCACACTA GAGGCTCACATGTTCCACGTCCACCGCCAGCTCCTCTTCCTCATCATGGTCCTCATCCAAACCAAGTGAACCCTTTTGAT ATTATGTATTTTGGCGCCAGGGGAAATGGAATTTCTGATGATTCAGAGGCACTTCTTGCTGCATGGAATGGTGCTTGCAA AGTTGCTGGAGCTACAGTTAAAGTTCCACCACAACTCAAGTTTCTCATCAAGCCTGTTACTTTCCAAGGCCCTTGTATGC CTGGCCTTACTCTTCAGATAGATGGAACTGTATTGGCTCCTGCTGAACCATCATCCTGGGCAAAATCCAATTTGTTTCAG TGGATAAATTTTAAATGGTTGCAGAACTTCACCATCAAAGGCTCTGGTACTGTTGATGGCCAAGGCTTCAACTGGTGGGG CACTTCATCAGAACTTTATGATATGCAGAAAAGCTACTCTGAAAATCTTGTAATGAAGCCAACTGCTATAAGATTTTACT CTAGCAACTTTGTGACAGTTCAAGATATTAGAATCATAAACAGTCCTCTGTGCCATCTAAAATTTGACAACTCAAAGGGC ATCAAAGTTAACAACATCACAATATCTTCCCCTGGGAACAGCCCAAATACTGATGGCATTCACTTGCAAAACACTCAGGA TGTGGAAATTCAGCATTCTGATATTGGAACTGGAGATGACTGTGTGTCCATCCAAACCGGTTGCTCTAATATTCATGTCC ACCACATTAAATGTGGCCCTGGACATGGTATAAGTTTAGGAGGATTAGGAAAAGACAAGAGTGTGGCATGCGTCTCTGAC ATCATTGTTGAGGATATCTCAATGAAAAATACTATGTATGGAGCAAGGATCAAAACATGGCAGGGAGGCATTGGTATGGT TAAAAATGTGACATTTTCCAGAATCAGAATCTATGATGTTCTGTTTCCAATAATGATAGATCAATACTACTGTGACAAGC AAATGTGCAAGAACCAGACAGGAACAGTTGTTATTTCTGGTGTGAATTTTGATCAAATAAGTGGAACTTATGCAGTGCAG CCTGTGCATCTAGCCTGCAGCAATTTCATACCATGCACAGATGTTGATTTAACTGATATTCAACTTAGGCCCTCTCTCAA ATATCGAGGTTCACAACAAGCTACGTGCTGGAACTCTTATGGTAAATCACAAGGCCCCTTGGTGCCAGCAAGCATTGATT ATTGTTTGAGAAGTGGTGGTGGATTGATCAAGAGGATAGCAAGGTCACATGATTATAGTGCATGTTACAGATAA
Protein sequence (LotjaGi2g1v0323300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKRNTSSSLLFFMFLLVNVFVTFTITSVEARKTNNTIKKKLHKGHKNSSNGHTRGSHVPRPPPAPLPHHGPHPNQVNPFD IMYFGARGNGISDDSEALLAAWNGACKVAGATVKVPPQLKFLIKPVTFQGPCMPGLTLQIDGTVLAPAEPSSWAKSNLFQ WINFKWLQNFTIKGSGTVDGQGFNWWGTSSELYDMQKSYSENLVMKPTAIRFYSSNFVTVQDIRIINSPLCHLKFDNSKG IKVNNITISSPGNSPNTDGIHLQNTQDVEIQHSDIGTGDDCVSIQTGCSNIHVHHIKCGPGHGISLGGLGKDKSVACVSD IIVEDISMKNTMYGARIKTWQGGIGMVKNVTFSRIRIYDVLFPIMIDQYYCDKQMCKNQTGTVVISGVNFDQISGTYAVQ PVHLACSNFIPCTDVDLTDIQLRPSLKYRGSQQATCWNSYGKSQGPLVPASIDYCLRSGGGLIKRIARSHDYSACYR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 30 | 30 | - | – | |
| Phobius | 1 | 8 | 8 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 30 | 30 | - | – | |
| SignalP_EUK | 1 | 30 | 30 | - | – | |
| PANTHER | 6 | 463 | 458 | 9.5E-212 | – | |
| PANTHER | 6 | 463 | 458 | 9.5E-212 | – | |
| TMHMM | 7 | 29 | 23 | - | – | |
| Phobius | 9 | 21 | 13 | - | – | |
| Phobius | 22 | 30 | 9 | - | – | |
| Phobius | 31 | 477 | 447 | - | – | |
| MobiDBLite | 36 | 72 | 37 | - | – | |
| MobiDBLite | 36 | 50 | 15 | - | – | |
| MobiDBLite | 58 | 72 | 15 | - | – | |
| Gene3D | 69 | 454 | 386 | 5.7E-118 | ||
| SUPERFAMILY | 78 | 452 | 375 | 6.28E-114 | ||
| Pfam | 111 | 438 | 328 | 9.7E-81 | ||
| SMART | 238 | 264 | 27 | 7.6 | ||
| SMART | 265 | 286 | 22 | 4000.0 | ||
| SMART | 288 | 308 | 21 | 7300.0 | ||
| SMART | 318 | 339 | 22 | 910.0 | ||
| SMART | 347 | 368 | 22 | 1300.0 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Polygalacturonase activity | Catalysis of the random hydrolysis of (1->4)-alpha-D-galactosiduronic linkages in pectate and other galacturonans. | ||
| Biological process | Carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. |
Expression pattern of LotjaGi2g1v0323300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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