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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0323400 |
| Transcript ID | LotjaGi2g1v0323400.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | carboxyl-terminal peptidase, putative (DUF239); TAIR: AT1G23340.3 carboxyl-terminal proteinase, putative (DUF239); Swiss-Prot: sp|Q28013|RASA3_BOVIN Ras GTPase-activating protein 3; TrEMBL-Plants: tr|A0A0L9US72|A0A0L9US72_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0323400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:79852842..79856609) extracted from Lotus japonicus Gifu genome v1.2.
CGGGTAGTTCAAGTTGTCAGTAATAAAACCCAAGTTTCAGAAATTTTCAGCACAAAACTCGCAGAAAGAGATAGACAGAG AATAGAAGAACGTTTGTTCTGTGCTTCCAAGGTGTTGAAATTGGTGAAGGAGTAATTAAGCTTTCTTGCAATACCCGTTT GTGTTGGATACTACATTTCTAGAATCAAAATCTTGAAGAAACACCTAGTTTTTGTTATGTGTATGGATTGGAAGAAGAAG ACAAGGCCAATGTGAACAAATGAACTTGGATTCAGCAATAGAAACAAGGAAGAGAAATTTCTCAAGCATGGATTTTAGCT GGTGTTTGAGCTCTCCAATCATTTCAACCTTTGTACATTTTCTTCTTGTTGCTTCTCTGTTTTGTCCTGTTCGTTCCTCA GAAATGAGGAACACCCCAGATGCCAACAACACTTTTCGGCCACAAGAAGAGGTTCATAAATTGAACATCATAAGAAGTCG TCTTCAGCAAATCAACAAGCCTTCTATTAAGACAATTCAGGTATGTCAAAGTTTCATTTTTTTCACTTCCCCTGTTTTTT TATGCTCTGTTTTGAACTTCCCCTGTTTTTATGCTCTGTTTTTGGATCATAATGTGGTGATCTTTTTTCCTTCTTTGCAG AGTCCTGATGGTGATATCATAGATTGTGTTGTATCTCATCAGCAACCAGCTTTTGATCACCCTCTATTGAAAGGACAAAG ACCACTGGTAATTTTTATTTGCATTAAAAAAACTTTATGAGTGCATTATTTGAATTTAATCCAGAAAGAATTTTAAATTA AAGAAGTTAACATTTATATGCATGTGCAGGATCTTCCAGAAAGACCCAAAAGCCATAATCATAAGGACATGTTGAATGAA AATTTTCAGCTATGGACTTTGTCAGGGGAATCATGTCCAGAAGGTACAGTTCCAATCAGAAGAACAACAGAACAAGATAT GTTAAGGGCTAGCTCTGTCAGCAGGTTTGGAAGAAAATTAAGAAGAAGAGTTAGAAGGGACACAAACAGCAATGGACATG AGGTATGCAGTTCAGAAAAATAAAAAAAATAAAGCATAAACATTTTATTTTAGTATAACTGGATTTTCATTCCTTTCTTT CCATCCTGAAACTTCAAACTTTTCCAATTTAATGATCACAGAATTTCATGGTTCATGGGCTAGTTAATGACTTAATGTTT CACATAATCCAAAGCATGTGGTCTTTCTTTCCTTTTTTATATGAGCTGCAACTATCATTATCTTGCATAGAAAATTTTAA CTGAACAATCCAACCTGAAATTTAAACTAGTACAACAAAACAAATGAAATTGAAATTTAATTTAGGAACTTTATGGCATC TTCAAAATGGCCTAACAAATTGGTTTGTGTTGGTGCACACAGCATGCAGTTGGGTATGTGAGTGGACAACAGTACTATGG AGCAAAGGCTAGCATAAACGTGTGGGCCCCACGCGTGGCAAATCAATATGAATTCAGCTTGTCCCAAATGTGGGTCATCT CTGGTTCATTTGGGGATGATCTCAACACCATTGAAGCTGGTTGGCAGGCATGTTTCAATTCAGCCATTACTGCAACTTAA TTCCTCATTTGCTCTTGTTCTTTCAATCTTTCAAAGGTTCCCTTCCTTCAATGCTTTAGCATTCAAAATGCTGATTTGGT TACCTGCGGTTACGAATACTTAACATTCACGCACTTACGATATCTCAACCACACAACTAAAATTAGTTGGCTCATATTTT TCATTAAGATTATATGATAGACATATTTTAAAATCTATAAGGCTTTGGAACAAGATAACTTAGATTTAGTGACCACGTCA ATGTAGAGATTCTTAGCTACAAGAAATCCATTTCCTTCAAAGACAGTTAGGATGCTCACCAACCAACCACTCATTTTCAT CCATGTATTTAATTTTGAATTTGATTGACTAACCAACCAATCTAATTTCAATTAATTTTTATGCAGGTCAGCCCTGAGCT CTATGGGGACAGTTACCCTAGATTCTTTACTTATTGGACGGTAAGTAAACTCATTGGAGAAAAAGGAGGAGAATAATATA CTACTATATGCTATGATGTATGATGTTTATGATCTTTGCTTGAAGTGTAAGAAAGTTAATAAAAAGAAATTCTAAGAAAA CTAAATAATGATTTGTAATTATATGCAGAGTGATGCATATCAAGCAACTGGATGCTACAATTTACTGTGTTCAGGCTTTG TTCAAACTAATAATAGAATTGCAATTGGAGCTGCAATCTCTCCAACTTCTTCATATGGAGGAGGACAATTTGATATTAGC TTGCTCATCTGGAAGGTAATTTTCTGCTTCATAATGAAATTGATCTTTGAAGACTATTTAGTATTGAGAATTTAATATAT GAGTCTTCAATTTTTTTAGGCTTACTTTTGCCTCTTTTATTTTTGGTGGATAAGAGCTGTTTTAACTGTTAATTGAAAAA GTTAAACTTTGTCACACTAAGTCATTATTAATAAGAATTAAGGGTTCATTTCTTTACTATAGTTTAGATTAATCTTTGGT GTGCATACATGTTTAGTTGAAACCCAACAACCAATGCTAGATCACATTAAGGGTCCCATCTAAAGGATAAAAGATTTGAT GACAGAAAACTATTGCCCCCTTGGATTTGAATACTTTTTTCTTGTTATGAAAAAAGTCTACAAATGTCATGGTCAAAAGC TCAAAGGAGCTCATAAAACAAATAATAAATAAATTTAAAAATGTTCAATGGTGGGCTCTCCACTGTTTTGGAAGTCTCAA TGCTCAAATGTCATCGGATTTTGTGATGTGGATTATTAGAAGGAGAAGTAAGAAGTAATCAAGTTGTGCTTATCCAAAAA AAAAAGTAATCAAGTAAAGGTTGTTTTATGTTTTTTATGGCAAGATAATAATTATTTTATAAATTAAAAAATTATATAAA AGACAAAAAAAAAGAGAGGGTGGAATACATCAATACAAAATAACAGTGCACGCAGTTTTGTACCATGTCTGGTCTTAGTT TACATCTACCACTTTATACTACTTTAATTCTTTGGGACATAACACGCATGCACTGGTGAATTCGAATAATGAACTGTATT TCCCTTCTTCTTTCATTCTTTTTAAGATTCTCTTCCTTTTTTCCCAACAAAGAGCTTCTAATTCTGAGCTCTTTACCCTT TTCTCATGGTCTACTATTATTTTAACAAATTCCCAATATTTTGCAAATTCCCATCCCTCACTCACCACCTTTCTTCCACC TCTTTTTGACCCATTTCACTCCCCAACCTGGCTAACATGTTGCTCTTCATGATTATGTCTCGGAGTCATTTTTCCTTGTT ACAAAAAATAGGGGATAAATTATATTTTTGGTCCTATAGTTTAGGAATGTGAGATTTTGGTCTCTATAGTTTTAATTGCT AAAATTAAGTCCCTCCATTTCTAGAATCACAACTTTTTTTTTTACGTAAGCAACAATTTAAGACAATTTATGTTACTTTC AACATAAAAAGTTATGATACATGTCAATTTTTTTCATTAGTTATTGGATGACAAACTAATATGTAAGGCAAATTTGTACA ATTTTAAAAGTATATGGACTTAATTTGAGAAATTGAAACAATACCGATCAAAATCACACCTTCCTAAAATTATAAGGTAA AAAATGCAATTAAACCAAAGAAAAACAACAAAAGATGTTATTGAAGATTTGGTTTTTTTTTTGTGCAGGACCCAAAGCAT GGGAACTG
CDS sequence (LotjaGi2g1v0323400.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAACTTGGATTCAGCAATAGAAACAAGGAAGAGAAATTTCTCAAGCATGGATTTTAGCTGGTGTTTGAGCTCTCCAAT CATTTCAACCTTTGTACATTTTCTTCTTGTTGCTTCTCTGTTTTGTCCTGTTCGTTCCTCAGAAATGAGGAACACCCCAG ATGCCAACAACACTTTTCGGCCACAAGAAGAGGTTCATAAATTGAACATCATAAGAAGTCGTCTTCAGCAAATCAACAAG CCTTCTATTAAGACAATTCAGAGTCCTGATGGTGATATCATAGATTGTGTTGTATCTCATCAGCAACCAGCTTTTGATCA CCCTCTATTGAAAGGACAAAGACCACTGGATCTTCCAGAAAGACCCAAAAGCCATAATCATAAGGACATGTTGAATGAAA ATTTTCAGCTATGGACTTTGTCAGGGGAATCATGTCCAGAAGGTACAGTTCCAATCAGAAGAACAACAGAACAAGATATG TTAAGGGCTAGCTCTGTCAGCAGGTTTGGAAGAAAATTAAGAAGAAGAGTTAGAAGGGACACAAACAGCAATGGACATGA GCATGCAGTTGGGTATGTGAGTGGACAACAGTACTATGGAGCAAAGGCTAGCATAAACGTGTGGGCCCCACGCGTGGCAA ATCAATATGAATTCAGCTTGTCCCAAATGTGGGTCATCTCTGGTTCATTTGGGGATGATCTCAACACCATTGAAGCTGGT TGGCAGCCCTGA
Protein sequence (LotjaGi2g1v0323400.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNLDSAIETRKRNFSSMDFSWCLSSPIISTFVHFLLVASLFCPVRSSEMRNTPDANNTFRPQEEVHKLNIIRSRLQQINK PSIKTIQSPDGDIIDCVVSHQQPAFDHPLLKGQRPLDLPERPKSHNHKDMLNENFQLWTLSGESCPEGTVPIRRTTEQDM LRASSVSRFGRKLRRRVRRDTNSNGHEHAVGYVSGQQYYGAKASINVWAPRVANQYEFSLSQMWVISGSFGDDLNTIEAG WQP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 20 | 20 | - | – | |
| TMHMM | 19 | 41 | 23 | - | – | |
| Phobius | 21 | 41 | 21 | - | – | |
| PANTHER | 34 | 242 | 209 | 9.6E-98 | – | |
| PANTHER | 34 | 242 | 209 | 9.6E-98 | – | |
| Phobius | 42 | 243 | 202 | - | – | |
| Pfam | 85 | 192 | 108 | 1.9E-40 | ||
| Pfam | 205 | 242 | 38 | 7.2E-7 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0323400.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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