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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0325200 |
| Transcript ID | LotjaGi2g1v0325200.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | BTB/POZ domain-containing protein; TAIR: AT1G67900.1 Phototropic-responsive NPH3 family protein; Swiss-Prot: sp|Q9C9V6|Y1790_ARATH BTB/POZ domain-containing protein At1g67900; TrEMBL-Plants: tr|G7JXS6|G7JXS6_MEDTR Phototropic-responsive NPH3 family protein; Found in the gene: LotjaGi2g1v0325200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:80021835..80024670) extracted from Lotus japonicus Gifu genome v1.2.
ATGAAGTTCATGAAATTGGGATCTCGTCCTGATACTTTCTACACTGCAGAGGCAATAAGGTAAGAAATTAATTAATCACT TTGATTCTTTCTTTCTTCTAAGATGTTTATCTTCTGGTCTAATAGGATTAAGTGTATATCTTCTCTTTATTTGCAGGTCA GTGTCTTCTGAAGTTTGCAGTGACCTTATAATTCAAGTGAGGGGAACTAGATATCTTCTTCACAAGGTATGACAATGACA GAAACTCTTCAAGTTCTAATAATTTCAGTTCTATATCTATTTTCTATCAATTTTTACTTGTTGTTCTCATGTAAAAAATT ATCTGAAGTTCATGCTGATGATGATGTACAGTTTCCCCTGCTATCAAAATGTCTGCGCCTGCAAAAGCTATGCTCAGAAT CTCCTGATTCTTCTCCACACCAAATAGTCCAGCTACCTGATTTCCCTGGAGGGATTGAAGCATTTGAGCTTTGTGCCAAG TTCTGCTATGGAATCACCATCACTCTAAGCCCTTACAACATTGTAGCTGCAAGGTGTTCTGCTGAGTATCTGCAAATGAC CGAGGAGGTAGAGAAGGGGAACTTGATTCAAAAGCTTGATGTTTTCTTCAATTCATGCATCCTCCGTGGCTGGAAGGATT CTATAGTGAGTCTTCAAACCACAAAAGCATTGCATTTGTGGTCTGAAGACTTAGAAATTACAAGCAGATGCATTGAGGCT ATTGCCTCAAAAGTTTTAAGCCACCCCACAAAGGTGAGTTTGTCTCATTCTCACTCCAGAAGGGTGAGGGATGATGTTTC ATCTTGCAATGAGACTGAAAGTGTGAGACACAAATCAAACAAAGGATGGTGGGGTGAAGATTTAGCAGAATTGAGCATAG ACCTTTATTGGAGAACCATGATAGCAATCAAATCTGGTGGTAAAGTTCCCTCAAATCTCATTGGAGATGCATTGAAAATC TATGCATCTAGATGGCTACCAAATATTACCAAGAATGGACATGTTAATAGAAAGCAAGTAGCTTCTGATAATTCTGACTT AGACTCAGCCAGTGAGATAACCTCAAAGCATCGTTTGCTTCTGGAATCAATAGTGAGCTTGCTTCCTGCAGAAAAAGGTG CTGTTTCTTGTAGCTTTCTTCTGAAGCTCTTGAAGGCATCCAATATTCTCAATGCTTCTTCATCTTCAAAGATGGAGTTA GCAACAAGAGTAGGGCTTCAACTTGAGGAAGCAACCGGGAATGATCTTTTGATACCCTCACTGTCTTACACAAATGACAC ACTGTATGATGTTGAATTGGTGATGACCATATTGGAACAGTTCATGGCACGAGGGCAGAGTCCCCCAACTAGTCCTCCAA GGTCTCTGATGACCTTTGAAAGAAGGAGGTCTCGTTCAGCAGAGAATATTAACTTTGAATTTCAGGAGAGTAGGAGATCC TCTTCAGCTTCTCACAGTTCAAAATTGAAGGTGGCAAAGCTTGTGGACAGGTATCTTCAAGAAATTGCAAGAGATGTAAC TTTTTCCTTGTCCAAGTTCATTTCTCTTGCTGAAATTATACCAGATTTTGCAAGACAAGACCATGATGATCTCTACAGAG CTATTGACATTTATCTCAAGGTAAAACTGTTTGTGTTTTCTAAATATTACTTCATTTTACTCTCAAGGTAACAAACATGT AAGAAAAAATAGTGGCTGAACACATTTCACTTTCACATTTTAGGATGTGAGACAGAATTAGTGGATAACCAACTTTCTAG ACCACAAAATGTTGTCTTATTCAAAACTGATTGGCAGTTAGGTGTAGACTGACCCACCATAAATTTAGCCCTGACTGAGT CCATGCTCTGACTGATGACATAGTTTCAGTATGTATTCAGGTTTTTGTGATTTCATTTGGCTAAAAACATGAAGATAAAA TTGCCTGTCAGAGTTGTCATAGTGTTCCATCATATTACTACAGTTATGTCCAGAAGATTGGAAAAAGAGGGAGAGGAGAT GCATGTTCTTTATTCCTTCACATGATTGACAGTGTGTCTCCCCTATTTTCCAATTTTGACCATTTACAACCACTCCATTT AGCTAAATTCCACCTCAGAATTTCTTAAACGATGTAACATGTGTGTGTTGAGAAGTCTCACATTAACTAGAAATATGACC ATAATATTTCTTATAAATGTAGAGTAGCCATCACCCCTAGCTAGGTTTTAAGATAGAATTAGGCCTAACTCAAATTTTAA GTATCTCACTGTCAGTTCAGTAAAATTTCTGGCTTGCAGGGATGTTATATTTTACTTAAAATTCTGTGTTGTTTAATTGG AAAATCCAGGCTCATCCAGAACTCAACAAGAGTGAAAGGAAAAGACTATGTAGAATACTTGACTGCAAAAAACTGTCAAT GGAAGCTTGTATGCATGCAGCACAAAATGAGTTACTCCCTCTAAGGGTTGTTGTGCAAGTTCTCTTCTTTGAGCAAGCTA GAGCAGCAGCAACTAATGGTGACAAAGTGTCTGATTTACCAAGCAACATCAAGACATTGCTTACAGCACATGGAATTGAC CCATCAAAACACACAGCACCCTTAAGCACTACCACAAGCATAAATGCTGAGGATAATTGGAGTGTTTCTGGCTTCAAGTC ACCAAAGTCAAGGTCTTCAACTCTGAGGATGAAGTTAGCTGAGGATCATGATGATTTAGATGAAAATGGTTTAGCCAATG ATGTGATTGGAAGAAATTCAAGATTTAGAGGAATCTGTGCTCTTCCTACACAACCCAAAAAAATGTTTAGCAAGTTGTGG TCTGCAAATAGAGCAGCAGCCACTGAAAAGAATTGA
CDS sequence (LotjaGi2g1v0325200.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGTTCATGAAATTGGGATCTCGTCCTGATACTTTCTACACTGCAGAGGCAATAAGGTCAGTGTCTTCTGAAGTTTG CAGTGACCTTATAATTCAAGTGAGGGGAACTAGATATCTTCTTCACAAGTTTCCCCTGCTATCAAAATGTCTGCGCCTGC AAAAGCTATGCTCAGAATCTCCTGATTCTTCTCCACACCAAATAGTCCAGCTACCTGATTTCCCTGGAGGGATTGAAGCA TTTGAGCTTTGTGCCAAGTTCTGCTATGGAATCACCATCACTCTAAGCCCTTACAACATTGTAGCTGCAAGGTGTTCTGC TGAGTATCTGCAAATGACCGAGGAGACCACAAAAGCATTGCATTTGTGGTCTGAAGACTTAGAAATTACAAGCAGATGCA TTGAGGCTATTGCCTCAAAAGTTTTAAGCCACCCCACAAAGGTGAGTTTGTCTCATTCTCACTCCAGAAGGGTGAGGGAT GATGTTTCATCTTGCAATGAGACTGAAAGTGTGAGACACAAATCAAACAAAGGATGGTGGGGTGAAGATTTAGCAGAATT GAGCATAGACCTTTATTGGAGAACCATGATAGCAATCAAATCTGGTGGTAAAGTTCCCTCAAATCTCATTGGAGATGCAT TGAAAATCTATGCATCTAGATGGCTACCAAATATTACCAAGAATGGACATGTTAATAGAAAGCAAGTAGCTTCTGATAAT TCTGACTTAGACTCAGCCAGTGAGATAACCTCAAAGCATCGTTTGCTTCTGGAATCAATAGTGAGCTTGCTTCCTGCAGA AAAAGGTGCTGTTTCTTGTAGCTTTCTTCTGAAGCTCTTGAAGGCATCCAATATTCTCAATGCTTCTTCATCTTCAAAGA TGGAGTTAGCAACAAGAGTAGGGCTTCAACTTGAGGAAGCAACCGGGAATGATCTTTTGATACCCTCACTGTCTTACACA AATGACACACTGTATGATGTTGAATTGGTGATGACCATATTGGAACAGTTCATGGCACGAGGGCAGAGTCCCCCAACTAG TCCTCCAAGGTCTCTGATGACCTTTGAAAGAAGGAGGTCTCGTTCAGCAGAGAATATTAACTTTGAATTTCAGGAGAGTA GGAGATCCTCTTCAGCTTCTCACAGTTCAAAATTGAAGGTGGCAAAGCTTGTGGACAGGTATCTTCAAGAAATTGCAAGA GATGTAACTTTTTCCTTGTCCAAGTTCATTTCTCTTGCTGAAATTATACCAGATTTTGCAAGACAAGACCATGATGATCT CTACAGAGCTATTGACATTTATCTCAAGGCTCATCCAGAACTCAACAAGAGTGAAAGGAAAAGACTATGTAGAATACTTG ACTGCAAAAAACTGTCAATGGAAGCTTGTATGCATGCAGCACAAAATGAGTTACTCCCTCTAAGGGTTGTTGTGCAAGTT CTCTTCTTTGAGCAAGCTAGAGCAGCAGCAACTAATGGTGACAAAGTGTCTGATTTACCAAGCAACATCAAGACATTGCT TACAGCACATGGAATTGACCCATCAAAACACACAGCACCCTTAAGCACTACCACAAGCATAAATGCTGAGGATAATTGGA GTGTTTCTGGCTTCAAGTCACCAAAGTCAAGGTCTTCAACTCTGAGGATGAAGTTAGCTGAGGATCATGATGATTTAGAT GAAAATGGTTTAGCCAATGATGTGATTGGAAGAAATTCAAGATTTAGAGGAATCTGTGCTCTTCCTACACAACCCAAAAA AATGTTTAGCAAGTTGTGGTCTGCAAATAGAGCAGCAGCCACTGAAAAGAATTGA
Protein sequence (LotjaGi2g1v0325200.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKFMKLGSRPDTFYTAEAIRSVSSEVCSDLIIQVRGTRYLLHKFPLLSKCLRLQKLCSESPDSSPHQIVQLPDFPGGIEA FELCAKFCYGITITLSPYNIVAARCSAEYLQMTEETTKALHLWSEDLEITSRCIEAIASKVLSHPTKVSLSHSHSRRVRD DVSSCNETESVRHKSNKGWWGEDLAELSIDLYWRTMIAIKSGGKVPSNLIGDALKIYASRWLPNITKNGHVNRKQVASDN SDLDSASEITSKHRLLLESIVSLLPAEKGAVSCSFLLKLLKASNILNASSSSKMELATRVGLQLEEATGNDLLIPSLSYT NDTLYDVELVMTILEQFMARGQSPPTSPPRSLMTFERRRSRSAENINFEFQESRRSSSASHSSKLKVAKLVDRYLQEIAR DVTFSLSKFISLAEIIPDFARQDHDDLYRAIDIYLKAHPELNKSERKRLCRILDCKKLSMEACMHAAQNELLPLRVVVQV LFFEQARAAATNGDKVSDLPSNIKTLLTAHGIDPSKHTAPLSTTTSINAEDNWSVSGFKSPKSRSSTLRMKLAEDHDDLD ENGLANDVIGRNSRFRGICALPTQPKKMFSKLWSANRAAATEKN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 598 | 598 | 1.7E-242 | – | |
| PANTHER | 1 | 598 | 598 | 1.7E-242 | ||
| CDD | 20 | 115 | 96 | 2.55411E-38 | – | |
| Gene3D | 20 | 147 | 128 | 1.1E-8 | – | |
| SUPERFAMILY | 22 | 114 | 93 | 1.88E-15 | ||
| ProSiteProfiles | 178 | 487 | 310 | 92.473 | ||
| Pfam | 179 | 463 | 285 | 3.1E-97 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0325200.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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