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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0326000 |
| Transcript ID | LotjaGi2g1v0326000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Zinc finger homeodomain protein 1; TAIR: AT4G24660.1 homeobox protein 22; Swiss-Prot: sp|A2Z259|ZHD1_ORYSI Zinc-finger homeodomain protein 1; TrEMBL-Plants: tr|A0A0L9UB56|A0A0L9UB56_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0326000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:80136725..80138355) extracted from Lotus japonicus Gifu genome v1.2.
AGAAAACAGAGAACCGCAAAAAAGTTATATGAAGCCACACCTTTCGACAAAGAAAGCACAGCTTCAACAACAGTGAGAAC AAGCAGAGAGAGAAAGAGTGTATGTAAGAGCACCTTGATTCTCTTCACCTTCAAATTTCCTGTTAGATCACTATATAATA TTGTAGTTACTTCCTACTGCAGAGACAGAAATGGAGTTTGAAGATCAAGAGGAGCAAGAGGAAGAGCTCTGTATGGCCAC AGCACCGAGCTACGACTCACTCACTCACCCTTCCCGAGTTAAGATGCCAGGTGGCGGTGCAGAACCCATCATGGCTCACC CTCTCAGAAACAACAGCAGCAACAACGGCGCCGCCAAGGGGAGATACAGGGAGTGCCTGAAGAACCACGCTGTTGGCATC GGCGGCCACGCACTTGATGGTTGTGGCGAGTTTATGCCGGCGGGGAGTGAAGGCACGCTGGATGCGCTTAAATGCGCCGC CTGCAACTGCCACCGCAACTTCCACCGCCGGGAGAATGACTCGTCCAACTCCCCTGGAGACGGTGGACAGTTTCTGCTGA CTCACCTCCCCCATGTTCCACCTCCGCCGCCGCAGTTCCAGGCGTACTATGGCCGGGGTCCGGCGGGGTATTTACATATG TCGGGGCAGCACAGGGTGGGTGCGGGTACGCTGGCGCTGCCGTCGATCTCCGGTGGTGGTGGGCCCCGGGAGGATCAGGA GGATATTTCGAACCTGAGTGCAGGTGGGGGATCTTCAAAGAAGAGGTTCAGGACCAAGTTCACACAGGAACAGAGGGATA AGATGCTGGATTTGGCGGAGAGATTGGGTTGGAGGATTCAGAAGCATGATGAAGGTGTGGTCCAGGATTTCTGTAATGAA ACTGGTGTCAAGCGTCATGTTCTCAAGGTTTGGATGCATAACAACAAGCACACTCTTGGTAAGAAGCCCTAGAAAAATCA AACCCACAAAAAAAATTGGGGTTGTGCTTCTTTGTTTCTTACTCTCACTCTTATGATCCATCCTCCTGTTTTGTGCTATT CAGCTGCATCAAGTGTTGACAGGATTAATTAACTTTAATTTCTCTCATTATCTAAGGGTAATGTATATTGGTTAAGTATT AGTTTAATTAAGTTCAATGGTGGGTAATTCATTAGGGTTTCTTTCTTTTTTATTCTTCTCCTTTAAAGGTTGTGGCTATC ATGCTGATTGTGTCAATGTAGGTGAGGATGCTTCAATTAGAGGACATTAGTGTTGATGAACTAATTTTATTTTATTTAAG TATGGTACCAAAATCAGACTTTGATTATCAGTTTTTTGTTGTTGTTGTTGCACATGTTCTAGTAGTAGCATTTAATTTTG CAGTAATGATTGATGTTGTGCAATGGTGGAGGGTGAATGCAGTTGTAACGTTTTTGGCATAGATGAGTATGAGCTAGAGG GATGTCAAATGAGGCATTGGTTTGTAGCTTCTGAAGGTGATGACTGATGACGATGAAGCTAGAAATAGATGACCTATAGT TTTGTTTCTCTATACTGATACTCTACCTATCCTAACTCCTAAGACAGTTGTTGGAAAGAAGCAACTTTCATTTCTCGATA GCATCACTCACTGCCTTCTCGATATATCACC
CDS sequence (LotjaGi2g1v0326000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGTTTGAAGATCAAGAGGAGCAAGAGGAAGAGCTCTGTATGGCCACAGCACCGAGCTACGACTCACTCACTCACCC TTCCCGAGTTAAGATGCCAGGTGGCGGTGCAGAACCCATCATGGCTCACCCTCTCAGAAACAACAGCAGCAACAACGGCG CCGCCAAGGGGAGATACAGGGAGTGCCTGAAGAACCACGCTGTTGGCATCGGCGGCCACGCACTTGATGGTTGTGGCGAG TTTATGCCGGCGGGGAGTGAAGGCACGCTGGATGCGCTTAAATGCGCCGCCTGCAACTGCCACCGCAACTTCCACCGCCG GGAGAATGACTCGTCCAACTCCCCTGGAGACGGTGGACAGTTTCTGCTGACTCACCTCCCCCATGTTCCACCTCCGCCGC CGCAGTTCCAGGCGTACTATGGCCGGGGTCCGGCGGGGTATTTACATATGTCGGGGCAGCACAGGGTGGGTGCGGGTACG CTGGCGCTGCCGTCGATCTCCGGTGGTGGTGGGCCCCGGGAGGATCAGGAGGATATTTCGAACCTGAGTGCAGGTGGGGG ATCTTCAAAGAAGAGGTTCAGGACCAAGTTCACACAGGAACAGAGGGATAAGATGCTGGATTTGGCGGAGAGATTGGGTT GGAGGATTCAGAAGCATGATGAAGGTGTGGTCCAGGATTTCTGTAATGAAACTGGTGTCAAGCGTCATGTTCTCAAGGTT TGGATGCATAACAACAAGCACACTCTTGGTAAGAAGCCCTAG
Protein sequence (LotjaGi2g1v0326000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEFEDQEEQEEELCMATAPSYDSLTHPSRVKMPGGGAEPIMAHPLRNNSSNNGAAKGRYRECLKNHAVGIGGHALDGCGE FMPAGSEGTLDALKCAACNCHRNFHRRENDSSNSPGDGGQFLLTHLPHVPPPPPQFQAYYGRGPAGYLHMSGQHRVGAGT LALPSISGGGGPREDQEDISNLSAGGGSSKKRFRTKFTQEQRDKMLDLAERLGWRIQKHDEGVVQDFCNETGVKRHVLKV WMHNNKHTLGKKP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 249 | 249 | 7.9E-91 | – | |
| PANTHER | 1 | 249 | 249 | 7.9E-91 | – | |
| Pfam | 58 | 109 | 52 | 4.9E-29 | ||
| TIGRFAM | 58 | 108 | 51 | 6.3E-30 | ||
| ProSiteProfiles | 59 | 108 | 50 | 27.752 | ||
| MobiDBLite | 163 | 197 | 35 | - | – | |
| Gene3D | 176 | 250 | 75 | 2.2E-32 | – | |
| SUPERFAMILY | 180 | 251 | 72 | 2.53E-18 | ||
| TIGRFAM | 190 | 246 | 57 | 5.1E-26 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi2g1v0326000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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