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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0326400 |
| Transcript ID | LotjaGi2g1v0326400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Protein curvature thylakoid chloroplastic-like; TAIR: AT4G38100.1 CURVATURE THYLAKOID 1D-like protein; Swiss-Prot: sp|Q8LDD3|CUT1D_ARATH Protein CURVATURE THYLAKOID 1D, chloroplastic; TrEMBL-Plants: tr|I3SMM9|I3SMM9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0326400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:80182742..80187307) extracted from Lotus japonicus Gifu genome v1.2.
GGCCACCGTGTATATATAAAGGCTTGAAAGCTAAACTCCTCAGTCTCTCACCTCACTCTCGTGAAATCACCATGGGGCTC ACAACACTTCATCCCATTCCTCTCTCGAAGCTTCCCACTGCCTCCACTTTCCTCCCTAAACCCTTTCTTCCTCCTAGACA ACAAACCCTAATCACCCCCTCAGCTGCACTTTTATCTCGTATGTTCTCTAATCCTCTCCAATTCGTATTCAATTTCAATC CTTAACAAAACTCATTTTCCATAATCATTTTCTGTCTTACATTGCTTCAAATCTTATTCTTTTGCTTGTTTCATTCATGG GTAGCTCCAATTATTTGACATTTCAGCTGAATATTGTTTTTTTAATACAAAGTTTTGTTTTTTATTTACATTTTCTGTTG TGTTGAATGAATTGAGTCTGTAATGTGCTTTACTCTTGTTAACTGAGCTATTGAATCAAATGGGTCATTGTAGTTTAATG GTGAAAGTATAAAGTTTTAATTTTTTTTTGGTTTTTTATGTAATGTCAGGATCAATTTTTGTGAGAAATCTGTTGACGAG GGCAACCTCATCCGATGAAACATCCGGGTCAAGTAGTTTTTATGGTGAGAAGCGTGACGGTGTTGTAATCTTGGATGATG TCAAAGGAGCTGGTGAGAATGGATTCAGTGAAACTGTGGTGAGTCAAGATCCAAAGGAAGAGGTGCCCGTGGATGAACAA GCGTTTGCTCTGTTGGATGATCTCAATATGAAGGTAACTTAAACAACCTCGACCCTGCAATTTGTCAAGTGTCTTTACAT GATAGTGTTGTGTAGTTACTGTGAGTTTGGTGATTGAGGGATGAGTGTTTATGCTTTTTTAACTTTACTCTTTGATTTAG ACTAGTTTGCTTTTCCATATTGCGTTGCTATGATGACACCTCAGTTTATTGATGGTATTTAGAGAATGCTTGATGATACT TCGGCAGTCTTGTCGAACTGAGCGGTTAACTGAGCAACAATACATGGTTTCATAATTTGTTTTTTCATTTCCTTTGCTCC ATGTAATTATTCATAGTTATGGCTTATGAGGATTTTACTTGAGCAGCATTTCATGTACCCAAAGAAAACATAATTGTGTG GTTGTTGTGCCTGTGTTCTATTAGTTTTGACCATGATACCCCAGTTACAGTTTTAATCAATTCTTATGCTGCACTACACT GCTGTTTGGTGTTAAAGAAGTGTTAATGTTGGTTCTTGTATACAGTATATGAACGACTAATTAAAGCTTTGCTATGATGA TACCTCAGTTTATTGATGGCATTTAAAAAATGCTTGATGATACTTCGGCAGTCATGTCGAACTGAGCGGTTAACTGAGCA ACTCTGCATGGTTTTAATTTTTTTTTCCTTTCCTCTGCCTCATAAGGTTTTAATCATTTTTTATGCTGCACTACAATGTT GTTCGGTGTCATAATTAATAGTTCTTGAGAAAGAAAGTGTAGGTGATTGTTCTTGTATACAACAAATTTCATGACTATTT AAAACTTTGCTATGATGATACCTCAGTTTATTGATGGCATTTAAAAAATGTTTGATGATACTTCGGCAGCCTTGTCGAAC TGAGCGGTTAACTGAGCAACTCTGCATGGTTTCATTTTTTTTCTTTTTCTTTGCTTCTTGTAATCATTCATAGCTAGGAT TTATGAGGATTTTACTTAAGCAGCATTTCCTGCACCCATGTTGTATCAGTTTAGACCAATTTTCTTCAGAATTCTCATGA TACCTAGTTAAAGTTTTAATCATTTTTTGTGCTGACTACGTTGTTATTTAGTGTCGTAATTAATAATCCTTGAGAAATGA AGTTTTAGTACTGATTCTTGTTTGCAAATTTTTTCATGACTAATTTAAACTTTGCTATGATGATACCTCAGTTTATTGAT GGCATTTAAAAAATGTTTGATGATACTTCGGCAGTCTTGTCGAACTGAGCGGTTAACTGAGCAACTCTGCATGGTTTCAT TTTTTTCTTTTTCTTTGCTTCTTGTAAACATTCAGTTATGATTTATGTGGAATTTACTTAAGCAGCATTTCCTGCACCCA GAAAACGTAATTGTGTGGTTGTTCCTGTGTTGTATCAGTTTAGACCAATTTTTTTCAGAATTCTCATGATACCTAGTTAA AGTTTTAATCATTTTTTATGCTGCACTACATTGTTATTTAGTGTCGTAATTAATAATCCTTGAGAAATGAAGTTTTAGTG CTGATTCTTGTATACAAAATTTTTCATGACTAATTTAAACTTTGCTATGATGATACCTCAGTTTATTGATGGCATTTAAA AAATGTTTGATGATACTTCGGCAGTCATGTCGAACTGAGCGGTTAACTGAGCAACTCTTCATGGTTTCATTTTTTTTCTT TTCCTCTGCTTCACGTAAGCATTCATAGTTATGGATTATGAGGGATTTACTTAAATTATGCCCAATCACCCTTTACGCTT TTTTGTTACTCATCAATCTCTCATCAGACCCATTATAGCCTGGATGTCATGATTTTTTTACTGGATGTAATAAACTCATT AATTTGTTTTCTTATTTGATTTTATGAAAACTGACTGCCTTTCTTTCTACTGGCGGGAAGAATATTGATTGTATTTTCTG CTTCCTATATTTGTTTGTATTGCATTTCTGATTTCTGATTCAGTCTAACACACCTTTCTCCCCTCTATACAGCTGGACTT AAACGATACTGGTTCTATTGTCTTGTATGGTAGCGGTGCTGTAGTGGCCCTGTGGTTGTTATCAGCCGTTATTGGTGCAA TTGATTCTATCCCTCTGGTGTGTATCTAACTTCAATAGTGTAAATATTTCAAACAGAAAACCAGCCCTTATAAACGCTAA TCGTTTTTTGGTTGCTTCTTATGGCAGTTCCCCAAGTTGTTGGAAGTTGTAGGGCTTTCATATACAGTTTGGTTCACTAC CCGTTATCTGCTTTTCAAGGTATTTGCTTAATTTCAGTTCTTTTGGCTGCTAAGTGGATAATAGTGACCTAGATTAATTA TATTTGTTAACCTGCAGAAAAACAGAGATGAGCTAGGTGCTAAAATAGAGGAGCTCAAGGAACAAGTAATTGGTTCAGAA GATAAATAATTGTACTGAAAGTATGGGTTTTTATTTTTCGGCTGTGCTTACAGTATGATTGTACAGTTACGTCCCTTCTA GTTAAGTGAATTTGTTGATTTTCTTCTCCATCCCTCATACCGCCTCTTTGCTACACAGGCAAGTACTGTAGATTTTGTTT TGGTTGATAAGTAGTATAGTGTCAGCATCTGTATTCCATTATTCAAAGTGTTGCTAGTGCTTAATCTGTTTGTGCATTGT GGCTATCCATTGCACTTTTCACTGGTTGCACAGGTTTGAGTTTAAATAATGGCTTTGCATAGTAAGTTAGTGTACATCTA ATTTTGAGATTTTGATTGGCATTATTGTGAATGGTTGTCTAAATGAAGGTAAAGTTTGGGTTTAATCTCCCAACTCCTAG GTAGTTTAATAATATTTAAGTTAAAAAAAAGTGAGCTAGAAATTTAAATTTAAATTAATTATTTATATATAAATAATTGG CAGCCTAAATAATTCTATTAGTCCATGGGGGTGGGGTAAAGTTACCCTCATGGGTCATTTTGACAAACTATGGTAATATC GATTTGATATGAATTTAAAATGAGATTAATTTCTTTGCACTGACAGTGTAAATAAGTTTTACACAATCATGCAATTACAT CTCTTCGTTTTGCTAGCTAATAGGAAATGAAGGGATGTAATTGAATGATTGTGTAAAACTTTTTACACTGTGTGCATAGA AATTAATTTCAATTTTATCTCATATATTTGGGTCTTAGTTCTATTTATTCTGTGTAATTAACTGTTTATGATTCTAGCAT TTTCACTCGTCACAATCTTTGCCAACCTGCAATGTTCAAGTGGTGCCTCTTTTTTTGCTACAATATACTGGGCTAAAAGC CCAAACTACTCCTTGAAGTGCCTCTTTTATGACATGTTTGGATCAACTTATTTATACTTAGAATTAATTCTAGCACCCAG TATCCCAGATATCATGTTTTGCTTTGGCAACTTCATGCTAAAGTTCTACACAGGTGACTTTCCATTCCAATACTGAAGAA CGCCTCCCTAGTTGACCTAAATAGTTGAGTATTGCTATTTAGGCCGAATGAATGACCAAACAAAACAGCCGGATGTTACA TGGCCATTTACAATTTGGTGAAAATAAGTTATCATTCAATGTTAGAAATCAAAGTATCTTTGTATTAACCAATTGGAAAT GAAAATGAAATTTTGTTTGGTACATTTTATCAATTTCCTAGCCACTACATAAGTTAAAAACTAATGTCTTTTTCGCATCT TATTTACCTTCTCACCTAGAATGAGAAATAGAAGAGAAATGAAAAATATGATACGTGAAAAAAGATAACATAAAATTAAA AAAATTAGAATGTAATTTAATTTCAAGTTTAGTAAAAATATTATTTTAATTAGAGTAATAATAAATGATAAAATCTATAA TTTGTA
CDS sequence (LotjaGi2g1v0326400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGGCTCACAACACTTCATCCCATTCCTCTCTCGAAGCTTCCCACTGCCTCCACTTTCCTCCCTAAACCCTTTCTTCC TCCTAGACAACAAACCCTAATCACCCCCTCAGCTGCACTTTTATCTCGATCAATTTTTGTGAGAAATCTGTTGACGAGGG CAACCTCATCCGATGAAACATCCGGGTCAAGTAGTTTTTATGGTGAGAAGCGTGACGGTGTTGTAATCTTGGATGATGTC AAAGGAGCTGGTGAGAATGGATTCAGTGAAACTGTGGTGAGTCAAGATCCAAAGGAAGAGGTGCCCGTGGATGAACAAGC GTTTGCTCTGTTGGATGATCTCAATATGAAGCTGGACTTAAACGATACTGGTTCTATTGTCTTGTATGGTAGCGGTGCTG TAGTGGCCCTGTGGTTGTTATCAGCCGTTATTGGTGCAATTGATTCTATCCCTCTGTTCCCCAAGTTGTTGGAAGTTGTA GGGCTTTCATATACAGTTTGGTTCACTACCCGTTATCTGCTTTTCAAGAAAAACAGAGATGAGCTAGGTGCTAAAATAGA GGAGCTCAAGGAACAAGTAATTGGTTCAGAAGATAAATAA
Protein sequence (LotjaGi2g1v0326400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGLTTLHPIPLSKLPTASTFLPKPFLPPRQQTLITPSAALLSRSIFVRNLLTRATSSDETSGSSSFYGEKRDGVVILDDV KGAGENGFSETVVSQDPKEEVPVDEQAFALLDDLNMKLDLNDTGSIVLYGSGAVVALWLLSAVIGAIDSIPLFPKLLEVV GLSYTVWFTTRYLLFKKNRDELGAKIEELKEQVIGSEDK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 125 | 125 | - | – | |
| PANTHER | 25 | 198 | 174 | 4.4E-61 | ||
| PANTHER | 25 | 198 | 174 | 4.4E-61 | – | |
| Pfam | 122 | 195 | 74 | 1.7E-26 | ||
| TMHMM | 125 | 147 | 23 | - | – | |
| Phobius | 126 | 147 | 22 | - | – | |
| Phobius | 148 | 158 | 11 | - | – | |
| TMHMM | 157 | 175 | 19 | - | – | |
| Phobius | 159 | 175 | 17 | - | – | |
| Coils | 172 | 199 | 28 | - | – | |
| Phobius | 176 | 199 | 24 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Thylakoid | A membranous cellular structure that bears the photosynthetic pigments in plants, algae, and cyanobacteria. In cyanobacteria thylakoids are of various shapes and are attached to, or continuous with, the plasma membrane. In eukaryotes they are flattened, membrane-bounded disk-like structures located in the chloroplasts; in the chloroplasts of higher plants the thylakoids form dense stacks called grana. Isolated thylakoid preparations can carry out photosynthetic electron transport and the associated phosphorylation. |
Expression pattern of LotjaGi2g1v0326400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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