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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0329300 |
| Transcript ID | LotjaGi2g1v0329300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Dof zinc finger protein; TAIR: AT5G65590.1 Dof-type zinc finger DNA-binding family protein; Swiss-Prot: sp|Q9LSL6|DOF57_ARATH Dof zinc finger protein DOF5.7; TrEMBL-Plants: tr|V7CM55|V7CM55_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0329300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:80478050..80479795) extracted from Lotus japonicus Gifu genome v1.2.
TGACATCTGTGCCCCACTCTTTTTCTCTCTCTCTCCCTGTCTCTACATATATCTATCTCTTCCATACAATTATGTGTATA GACACAGCTTTCTTTATTCTCTTAGATCTGAAAAAGACCAGTTACTCAACCTCATATGTCATTTTACTAGCTCCCAACAA TCACCTTCTTTCATGAGAATCACAGGTGATGTACCCATCAACACCCTTCCAATCCTTCCATCCACATCTCTTCTTCCTCC ATGCATGAAACCATTCAATTGGTGATCATCACATTCAACTTTCCCTCTGCAAAAGGAAACTGAAAACACAAGTCCCTTAA TTTGCTCCAACCTCTCTCTGCCTCAACCCGACCCCCACCACTTACCATGTCACCCGAGGACACATCCCCCGCAAAGCCCG CAAAAGACAGCGACAACAACCAAGGCTCCGGCAACGGTGGTCGGAAAGCCTCCTCCACCGCAAGGCCACCGGAGCAAGGC CTCAAGTGCCCTCGCTGCGACTCACCCAACACCAAATTCTGCTACTACAACAACTACAGCCTCACGCAGCCGCGCCATTT CTGCAAAACATGCCGCAGGTACTGGACCAAAGGCGGCGCTCTCCGCAACGTCCCCATCGGCGGCGGCTGCAGGAAGAACA AGAAGGTGAAATCCTCCAGACTCTCGACTGATTCCAAGGACTCTGGCTCCTCCTCCGATCACATTGGCGGTGGCCTGAAA TTCCTCCATTCTCTTTCACCTTCCATGGATTTTCAGCTCGGTGGGATGCCATTACCATTCCCTCGCCTCCAACACCACCC TCCAATCTACAACCAGTTTTCTTCCTATCTCGGCGACAGTTCCGCCCCTGCTTCTTCCGGTTTCAACCTTGACCCCTCAA ACTCCCTTGCTTCTCTGAACTACCCGTTTTCCACCGCCACCGGAAACGGTTACACCGGCGCCATACAGGGCATGAGCGCG TTGAGCGTGAGCAACACACTCGCCTCTAACATTGAGTCTTTGAGCTCCATGAACCAGGACTTGCACTGGAAGCTTCAGCA GCAGCGTTTATCGATGATGTTCAGTGGAGAAAACCAGAAAGAAAACAACAGTGTTGTTACACCAGTTAATACTCTTGAGA ACCAGAACCAGAACCAGAGACTTCAACCCATTTTGTTTCAGAATCTCGAGCTTTCAAGGACTGAAACTGATTTCTCCATT GGGAATTCCAGAAAAGAAGGGCAAAATGGGGATACACCAACTGAGTGGTTTTTTGGGAATTACAATAACGCTGCCTCGGT GACTCCTACACCAACCACCACTAGTAGCGGCGGCGGCGCTGGCCATGATAATGTTGGCAACTGGAGTAATGGGGTTCATG CCTGGGGTGATGTGCAGCAGCAGCAGCAGCAGCAATATAATGGTCTGCCCTAGATTAAGAGGTAGAGCTAGCTAGCTTCA ATTAAAAGCTTATATTAGGAAGAAATTAATAGGCCAACTCTGCTTAGGTATATGTTAATTTAGTTACTATGTCTCCTTGT TCTTAGACTTTTGGGTTGGAAAGATCATATATGTAACAGATGGGAAAAATTAAAGACCATAGAGTTGTGTTCATAATTTC ATACTCTTGTTTCATCTAGCTACATGTAAATCATTTCTCTAAATTCTTAATTTTACTAGTAGTACTAATTTGATTTGATG AATTGAATTAGGGATGATATGTGATGGGATTGTTCATGGTTTTACCATTTTTCGTCCATCAACAAT
CDS sequence (LotjaGi2g1v0329300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCACCCGAGGACACATCCCCCGCAAAGCCCGCAAAAGACAGCGACAACAACCAAGGCTCCGGCAACGGTGGTCGGAA AGCCTCCTCCACCGCAAGGCCACCGGAGCAAGGCCTCAAGTGCCCTCGCTGCGACTCACCCAACACCAAATTCTGCTACT ACAACAACTACAGCCTCACGCAGCCGCGCCATTTCTGCAAAACATGCCGCAGGTACTGGACCAAAGGCGGCGCTCTCCGC AACGTCCCCATCGGCGGCGGCTGCAGGAAGAACAAGAAGGTGAAATCCTCCAGACTCTCGACTGATTCCAAGGACTCTGG CTCCTCCTCCGATCACATTGGCGGTGGCCTGAAATTCCTCCATTCTCTTTCACCTTCCATGGATTTTCAGCTCGGTGGGA TGCCATTACCATTCCCTCGCCTCCAACACCACCCTCCAATCTACAACCAGTTTTCTTCCTATCTCGGCGACAGTTCCGCC CCTGCTTCTTCCGGTTTCAACCTTGACCCCTCAAACTCCCTTGCTTCTCTGAACTACCCGTTTTCCACCGCCACCGGAAA CGGTTACACCGGCGCCATACAGGGCATGAGCGCGTTGAGCGTGAGCAACACACTCGCCTCTAACATTGAGTCTTTGAGCT CCATGAACCAGGACTTGCACTGGAAGCTTCAGCAGCAGCGTTTATCGATGATGTTCAGTGGAGAAAACCAGAAAGAAAAC AACAGTGTTGTTACACCAGTTAATACTCTTGAGAACCAGAACCAGAACCAGAGACTTCAACCCATTTTGTTTCAGAATCT CGAGCTTTCAAGGACTGAAACTGATTTCTCCATTGGGAATTCCAGAAAAGAAGGGCAAAATGGGGATACACCAACTGAGT GGTTTTTTGGGAATTACAATAACGCTGCCTCGGTGACTCCTACACCAACCACCACTAGTAGCGGCGGCGGCGCTGGCCAT GATAATGTTGGCAACTGGAGTAATGGGGTTCATGCCTGGGGTGATGTGCAGCAGCAGCAGCAGCAGCAATATAATGGTCT GCCCTAG
Protein sequence (LotjaGi2g1v0329300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSPEDTSPAKPAKDSDNNQGSGNGGRKASSTARPPEQGLKCPRCDSPNTKFCYYNNYSLTQPRHFCKTCRRYWTKGGALR NVPIGGGCRKNKKVKSSRLSTDSKDSGSSSDHIGGGLKFLHSLSPSMDFQLGGMPLPFPRLQHHPPIYNQFSSYLGDSSA PASSGFNLDPSNSLASLNYPFSTATGNGYTGAIQGMSALSVSNTLASNIESLSSMNQDLHWKLQQQRLSMMFSGENQKEN NSVVTPVNTLENQNQNQRLQPILFQNLELSRTETDFSIGNSRKEGQNGDTPTEWFFGNYNNAASVTPTPTTTSSGGGAGH DNVGNWSNGVHAWGDVQQQQQQQYNGLP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 41 | 41 | - | – | |
| PANTHER | 1 | 340 | 340 | 2.2E-117 | – | |
| PANTHER | 1 | 340 | 340 | 2.2E-117 | – | |
| MobiDBLite | 12 | 30 | 19 | - | – | |
| Pfam | 37 | 93 | 57 | 6.6E-33 | ||
| ProSiteProfiles | 39 | 93 | 55 | 29.432 | ||
| ProSitePatterns | 41 | 77 | 37 | - | ||
| MobiDBLite | 84 | 111 | 28 | - | – | |
| MobiDBLite | 307 | 321 | 15 | - | – | |
| MobiDBLite | 307 | 330 | 24 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi2g1v0329300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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