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LotjaGi2g1v0330200.7

Overview

Field Value
Gene ID LotjaGi2g1v0330200
Transcript ID LotjaGi2g1v0330200.7
Related isoforms 8
Lotus japonicus genome version Gifu v1.2
Description Serine hydroxymethyltransferase; TAIR: AT4G37930.1 serine transhydroxymethyltransferase 1; Swiss-Prot: sp|P34899|GLYM_PEA Serine hydroxymethyltransferase, mitochondrial; TrEMBL-Plants: tr|A9YWS0|A9YWS0_MEDTR Serine hydroxymethyltransferase; Found in the gene: LotjaGi2g1v0330200
Working Lj name n.a.

We have encountered a general error: No InterPro domain data available

Sequence information

Genomic sequence (LjG1.1_chr2:80594946..80596391) extracted from Lotus japonicus Gifu genome v1.2.

TGGCCAAAGCAATTGAATGCTCCACTCGAGGTTGTTGATCCTGAAATTGCTGATATCATTGAGCATGAGAAAGCTAGACA ATGGAAGGTAAACTTTTCACTTTTCAGTGTTAACTTATCTTACTCTATACTATTTACTTTTGCATCTTTTCCCCTAAAAC CTTTGTGTTGAACTTCAAAATTATTCTGCACCTTTTTGTTTGATTTTGTGTCGTATGATGCAAAATATGATACTCAATTC CCCATCAATAGGATTTTTAGCTTTCAAAGGACTTAGCTTTTTTTCCCCACTATTTTTGAAGGGGCTGGAGCTGATACCCT CAGAGAATTTCACTTCTCTCTCTGTAATGCAAGCTGTTGGCTCTGTCATGACAAACAAATACAGTGAAGGATATCCCGGT GCAAGATACTATGGTGGAAATGAGTATGTTGGTCTTTTACTTTCTGTTTGCGATTGTAATGATAATTCATGGAAGCCAAT GTTATCATTTTGGATTTTATATTTTGAGTGCCTAATTTGAACCAATTCTAAGATTATGGACATTTCAATTTCAGGTTTAT TGACATGGCAGAAACACTATGCCAGAAGCGTGCCTTGGAAGCATTTAGGTTGGATCCAGCAAAATGGGGAGGTAAGAACA TTAGAAAAACCAACCATTTTTATTTTTTGATAGATTGTACAACTACTAACTTAGCTAGTAGCCTAGTGCTTTGTCTTTTG TCCTAAGCATGCAAGTATATATATATCTCTTGATTGGGTTTCATTTTATTCTGGTTTTGAGTGGTTTTACTTTTTCTCAA AACATCAAATTAGCAACAGCTTGAACCATTGAAGTCTCCCATGACTTACGGCATGTTTGGATCAACTTATTTCTTCTCAG AATCAATCCTGCCGCTCAAAAACTAATCACATGAGATTCTCCCCAAAATTAATTTTGACTTCAGAATTAATTGTATAAGG ATTTCCAAAGATGCTATTAGCTTGTTAGCTTGCTAAAATTTGAAGTGATCTGCCTTGGACTTCTCTGAGTGTGGGGGATT TTTATATATATATTAGTTATTAGATAGATGGTGAGTTTTCTCATATGTCATTGTTACCCCTAACTTGCAGTGAATGTGCA GCCTTTGTCTGGTTCTCCTTCCAATTTTCATGTTTATACTGCATTGCTAAAACCTCATGATAGAATCATGGCACTTGATC TTCCTCATGGAGGGCATCTTTCTCACGGTTACCAGGTATTATCAGCTTCCATCATTCATTTCCTGTTATAATCAAATCTA CAATAAATGTATGCCTTGTTGGTCATTGTTGACATTTTTCTGGAATTTCATCCAAGATTAGTTAGAAATAACTTTATAGT CGTTAATGAAAATTAAACTTGTTTACTGCGTACTTATATTTCTATTATTGTATTACAATTAATAAATCTTTTTAGATTAT CATTAG
Download Genomic Sequence

CDS sequence (LotjaGi2g1v0330200.7) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCAGAAACACTATGCCAGAAGCGTGCCTTGGAAGCATTTAGGTTGGATCCAGCAAAATGGGGAGTGAATGTGCAGCC TTTGTCTGGTTCTCCTTCCAATTTTCATGTTTATACTGCATTGCTAAAACCTCATGATAGAATCATGGCACTTGATCTTC CTCATGGAGGGCATCTTTCTCACGATTATCATTAG
Download CDS Sequence

Protein sequence (LotjaGi2g1v0330200.7) extracted from Lotus japonicus Gifu v1.2 Proteins.

MAETLCQKRALEAFRLDPAKWGVNVQPLSGSPSNFHVYTALLKPHDRIMALDLPHGGHLSHDYH
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Unable to find any records for the transcript with the identifer LotjaGi2g1v0330200.7.

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

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Expression data

Expression pattern

Expression pattern of LotjaGi2g1v0330200.7, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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