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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0330200 |
| Transcript ID | LotjaGi2g1v0330200.1 |
| Related isoforms 8 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Serine hydroxymethyltransferase; TAIR: AT4G37930.1 serine transhydroxymethyltransferase 1; Swiss-Prot: sp|P34899|GLYM_PEA Serine hydroxymethyltransferase, mitochondrial; TrEMBL-Plants: tr|I3SY17|I3SY17_LOTJA Serine hydroxymethyltransferase; Found in the gene: LotjaGi2g1v0330200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:80594432..80600280) extracted from Lotus japonicus Gifu genome v1.2.
GATGACCAAGGCATGTTTTTATAGGACAAAAACAAAACGACCAACTATAATTCAAGAAACACACACCCACTCTATCCTCT GCCTCTAACATGGCAATGGCAATGGCGCTTCGCAGGCTTTCATCTTCCATCGACAAGCCTTTACGTCCTCTCTTCAACGC TTCCTCTGTTTACTACAAGGTCCTCTCCTTTTCCATTTCAAATCAATTACCACTAATCATGTATCTATAGCTATGATGAA CCTTATTCACCATTTTCTCTCAAATTCCTTAACCGTTTAACTACCTGGAACTCATTGTCTTTTGATTTTTCCATTGTAGT CCTCTTTGCCTGATGAAGCTGTCTACGAGAAAACAACTGTTACGGTATGTTCTGATTGTAAATGATAGTATATGATATCA TCATCATTCATCACTTTACTTTTATGATTCATGGCAAGGACTCTTGCACTTGATGATTCCTATGTACTAGTTAGTTATTC ATGATGTTTTCGTTTGAGACTGTTGTCTTTGCAGTGGCCAAAGCAATTGAATGCTCCACTCGAGGTTGTTGATCCTGAAA TTGCTGATATCATTGAGCATGAGAAAGCTAGACAATGGAAGGTAAACTTTTCACTTTTCAGTGTTAACTTATCTTACTCT ATACTATTTACTTTTGCATCTTTTCCCCTAAAACCTTTGTGTTGAACTTCAAAATTATTCTGCACCTTTTTGTTTGATTT TGTGTCGTATGATGCAAAATATGATACTCAATTCCCCATCAATAGGATTTTTAGCTTTCAAAGGACTTAGCTTTTTTTCC CCACTATTTTTGAAGGGGCTGGAGCTGATACCCTCAGAGAATTTCACTTCTCTCTCTGTAATGCAAGCTGTTGGCTCTGT CATGACAAACAAATACAGTGAAGGATATCCCGGTGCAAGATACTATGGTGGAAATGAGTATGTTGGTCTTTTACTTTCTG TTTGCGATTGTAATGATAATTCATGGAAGCCAATGTTATCATTTTGGATTTTATATTTTGAGTGCCTAATTTGAACCAAT TCTAAGATTATGGACATTTCAATTTCAGGTTTATTGACATGGCAGAAACACTATGCCAGAAGCGTGCCTTGGAAGCATTT AGGTTGGATCCAGCAAAATGGGGAGGTAAGAACATTAGAAAAACCAACCATTTTTATTTTTTGATAGATTGTACAACTAC TAACTTAGCTAGTAGCCTAGTGCTTTGTCTTTTGTCCTAAGCATGCAAGTATATATATATCTCTTGATTGGGTTTCATTT TATTCTGGTTTTGAGTGGTTTTACTTTTTCTCAAAACATCAAATTAGCAACAGCTTGAACCATTGAAGTCTCCCATGACT TACGGCATGTTTGGATCAACTTATTTCTTCTCAGAATCAATCCTGCCGCTCAAAAACTAATCACATGAGATTCTCCCCAA AATTAATTTTGACTTCAGAATTAATTGTATAAGGATTTCCAAAGATGCTATTAGCTTGTTAGCTTGCTAAAATTTGAAGT GATCTGCCTTGGACTTCTCTGAGTGTGGGGGATTTTTATATATATATTAGTTATTAGATAGATGGTGAGTTTTCTCATAT GTCATTGTTACCCCTAACTTGCAGTGAATGTGCAGCCTTTGTCTGGTTCTCCTTCCAATTTTCATGTTTATACTGCATTG CTAAAACCTCATGATAGAATCATGGCACTTGATCTTCCTCATGGAGGGCATCTTTCTCACGGTTACCAGGTATTATCAGC TTCCATCATTCATTTCCTGTTATAATCAAATCTACAATAAATGTATGCCTTGTTGGTCATTGTTGACATTTTTCTGGAAT TTCATCCAAGATTAGTTAGAAATAACTTTATAGTCGTTAATGAAAATTAAACTTGTTTACTGCGTACTTATATTTCTATT ATTGTATTACAATTAATAAATCTTTTTAGATTATCATTAGATGCCCTCTTTATTTCTTTGTTCTTCTTTTTCCTCCCTCC AAGAAGCTTTCTTTCTTCATGTAAACTGTTTTCTGTTTAACTATCCTGATGATAAATTAACAAATACTAATTTCATTATG CAGACTGACACCAAAAAGATATCCGCGGTCTCTATATTTTTTGAGACAATGCCATATAGATTGGATGAAAGCACAGGATA CATTGACTATGACCAGGTATCTTTGCAGTTCCTTTTATCATGGTCATGATCCTTTTTGCAATAATCCTCACTTTTGGGTT AGTTTTTTATACACAATTGGCTTAGTCCACTTAGTGCGAAAAGGCTTGGTAGTTGTTGTATTTATGCACTATTAACTTGA TCATACTCATTCGAAGTGTCCATTAAAGACTAGCTCTTAGAACTAGAAGATTCACATGATATACATGTGGAGAGTTTGGT TACATGCTGCATACATATGAAACGAACTCAGATAGTTTTTTTACCACATTACAATATCTATAACTAGTGACTGATGGTCT TAAGTTCTTAAAACCAACTAATGCTTAAAGATGATATTTCTGTAGCCACTAAATAAACCTTTTACTTTTAACTTGACTAT GAGAGGCAATGGGAGTTGTTTTGTTCCACATTTCCGTTGCATCACTATCCAAAGTGGTAGACAATTTATTTGTCTTCTCG TTTCTCTTCTAATCTATTGCAATTTGGTGAGTGATTAACAATTAATCAAATTCAGTTTGCCCTGAGTGTGTCAATTCTCA ATTTTGCAGCATACTTGCTCAGTTGCTCCTTAAGTTCAGAATAATATTTATGTACCATTTTTGAGTCAGCTTGATGTTTT TATGACGTGAACAATTTTGAAATGCAGTTGGAGGCATCGGCTAAACTCTTCAGGCCAAAATTAATTGTTGCGGGAGCTAG TGCTTATGCCCGTCTATATGATTATGACCGCATACGCAAGGTAATTTGAAGTTAGCATAGAATGATAGAAAGTGGATGTG TTTCTTAGAATTTTTGGTTTTTAATTTGAATGGGTATCTGGAACACTCAGAGGGCTGAACTAATTGAACATGTTACAGGT GTGTGATAAACAAAAAGCTGTGTTGTTGGCAGATATGGCACACATTAGTGGATTGGTTGCTGCTGGTGTTATCCCTTCAC CTTTTGATTATGCAGATGTTGTGACTACCACAACCCACAAGTCACTTCGTGGACCCCGTGGGGCTATGATCTTCTTCAGG AAGGGGGTGAAAGAAATCAACAAACAAGGAAAGGAGGTACATTCTTAACAATTCATTTAACAATATAGTGACTAACAATT TAACAATTGTTTTTAATATTCTGGCTATTTATGCTTATTCCTACATAAGCTCATGGCTAACATGCAACACTATATTTTCT TATGTCTTTGAAGGTGCTGTATGACTATGAGGACAAAATCAACCAAGCCGTTTTCCCAGGACTGCAAGGGGGTCCTCACA ACCATACAATTACTGGTTTAGCTGTTGCATTGAAGCAGGTACTGCATAGAGAAGATTATGATGAAATTTATTTTTCTGGA AATTAAATTGTGAGTGACTAATGAAAAGGATCTATGCCAGTGTCTTTTTTTCTTGATATTGAGGTTTTTATATTGAATTG TAATTTCAGCAGACAGTAAAATGGATATAAAGTAAGTTTTTTCATCATTTAGCTTAATAAGAGGGTCGGTTTGAGGTGTT GATTTGGAGAGAGACATAGCTTTTGAATGTTACTGATTGGATCTTGAAAGAAAGTATGGAATGTGATGTATATTCATGAA ATGATTAGTTTCTTTTGTTTTTCCTTGTGTTGGTTCAGGCTACAACTCCAGAGTATAAAGCATATCAAGAGCAGGTTCTC AGTAATTGCTCAAAATTTGCACAGGTACATTGGGAAGGATAACTTAACTGCCTCTTTTCCCACATATTGGATCTTAATAC AGCACAAGGTTCAGTCTCCTTGCAGGAAAAAAGAGATTAACTCCATGTATTTTAAGTTTTAACACTAAATATGTTGCAGG CTCTGAGTGAGAGGGGCTATGAGCTTGTTTCCGGTGGAACTGAGAATCATCTAGTTTTGGTGAATCTGAAGAACAAGGTA ACTAACAACTACTTTGACTTTCCAAATAAGCATTGTCGAGTCTATTATGCTTTGCAATTGTAACATTCAGTGCTAATAAT TGTGTTACGGTCACAAACCTCACATTAAATTACAAATTATTTTTTGTGATTAATTCAAGATATCAACCCTCATAATATAA AGTGAGACTGGTGCTCTTTTTTCAGGGTATTGATGGCTCCAGAGTTGAGAAGGTGTTGGAATCAGTTCACATTGCAGCAA ATAAAAACACCGTTCCGGGAGATGTGTCTGCTATGGTTCCTGGTGGCATCCGGATGGGTACATGCTTTTCATTGCTAATA TATTGATCTTGATTCCATATTCAATTACTTGAATTTGATCTTGATAACTCTTGTGGCTTTCAGGAACTCCTGCTCTTACT TCTAGGGGATTCGTTAAGGAGGATTTTGTTAAGGTAGCTGAGTTTTTTGATGCAGCTGTAAACTTGGCTTTGAAGGCCAA GGCAGAGAGCAAAGGTTCCTAAGTTTTCAATATCCTAATCCTTCATGAGTTTGTGTTTGTTTTATCTGGACAAAGCTAGT ATAAGTTGCTGGGTGCTTGAATAAGCTTAACATGTAGTTGTGGGTGATTTTTCTTTTGAGCCAGGAACAAAATTGAAGGA CTTCTTGGCCACAATTCAGGAATCATCTTACTTTCAAACAGAGATTGCAAAGCTTCGCCACGATGTTGAGGAGTATGCGA AACAGTTTCCAACCATTGGTTTTGAGAAGGCAACAATGAAGTACAAAGAATGAGAAAAGAACAATTCCCCTAAGGTATGC ATTTGTATCAATCATATCATATCATTTGAGTGTCCACTTTAAACTTCAGTTCATATGATAAAAAAAAAGAAAACTATTCC AAGACAAAATGATACCAGCAATCCGATCTTAAACTTCTGAAGAATATACAAACATGAGATTTCGAGTCAGTTTCTCTTTT CCAAGATAGGAAATCTTGCATTTGGCACTTCTAAAAGATCAAAATTTCCCATTAAATTATACGAAATCGTAGATATTCTC TCATGTACTTAGTTTGCTATGTGGCAGGGAACACTATGGTCTTAGTGACAAGCAGTTCAACGTGATCAGTGTTCCTCATT CATGGAAGAGAAGGAAAGCATATAAATAGTTTTAGCCAAGAGCCTCTATGTATGAACCTAGAAAAACTTGATCGATTGGT ATCTTCTTGCAATGTATACATACATGTGTGATTACTGTCACAGCCCAATGCAACTTATAGCATTATTGCTTTACTTGGCC CTGAGTGCTTTACTTGGACCTGACTGGTTGAAAATGTGAATAACAAACCATTTCAGAGATAAGTTGGAAAACTAAAACAG ATCAGTGGCATCATCACCAAAGCTTAACCAGAAAAAGAAAAAAAAATCCTCGTGAGCATTATCTTAGTCCTCTTTGGAAA AACTTATCTGAATTAAACTTATAGGTGTTCCAGAGAGTAAATAGTTTATAACCGATCTTAAGCTGTTTTTGAGTTTATTA AATTCCTCGGATTAGCTTATGAATAAACGTTTATACCTACAACCTACTTTCAGCCTATTTCAACGCGTTATCAAATTAGC TTATGAAAAAGTGCTTATGCAGCACGCGCTAATGAAGTTATTTATCCAAACTTTGTAAAAAAATTAGAAGAACACATAGG AATGGTTCCCTTCACTGTTCCAACATTGAAACACGTGAACTAAAATTTTGAGACATAAAACTAAGGCCTAAGTGGGAATC TAAAACCAG
CDS sequence (LotjaGi2g1v0330200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAATGGCAATGGCGCTTCGCAGGCTTTCATCTTCCATCGACAAGCCTTTACGTCCTCTCTTCAACGCTTCCTCTGT TTACTACAAGTCCTCTTTGCCTGATGAAGCTGTCTACGAGAAAACAACTGTTACGTGGCCAAAGCAATTGAATGCTCCAC TCGAGGTTGTTGATCCTGAAATTGCTGATATCATTGAGCATGAGAAAGCTAGACAATGGAAGGGGCTGGAGCTGATACCC TCAGAGAATTTCACTTCTCTCTCTGTAATGCAAGCTGTTGGCTCTGTCATGACAAACAAATACAGTGAAGGATATCCCGG TGCAAGATACTATGGTGGAAATGAGTTTATTGACATGGCAGAAACACTATGCCAGAAGCGTGCCTTGGAAGCATTTAGGT TGGATCCAGCAAAATGGGGAGTGAATGTGCAGCCTTTGTCTGGTTCTCCTTCCAATTTTCATGTTTATACTGCATTGCTA AAACCTCATGATAGAATCATGGCACTTGATCTTCCTCATGGAGGGCATCTTTCTCACGGTTACCAGACTGACACCAAAAA GATATCCGCGGTCTCTATATTTTTTGAGACAATGCCATATAGATTGGATGAAAGCACAGGATACATTGACTATGACCAGT TGGAGGCATCGGCTAAACTCTTCAGGCCAAAATTAATTGTTGCGGGAGCTAGTGCTTATGCCCGTCTATATGATTATGAC CGCATACGCAAGGTGTGTGATAAACAAAAAGCTGTGTTGTTGGCAGATATGGCACACATTAGTGGATTGGTTGCTGCTGG TGTTATCCCTTCACCTTTTGATTATGCAGATGTTGTGACTACCACAACCCACAAGTCACTTCGTGGACCCCGTGGGGCTA TGATCTTCTTCAGGAAGGGGGTGAAAGAAATCAACAAACAAGGAAAGGAGGTGCTGTATGACTATGAGGACAAAATCAAC CAAGCCGTTTTCCCAGGACTGCAAGGGGGTCCTCACAACCATACAATTACTGGTTTAGCTGTTGCATTGAAGCAGGCTAC AACTCCAGAGTATAAAGCATATCAAGAGCAGGTTCTCAGTAATTGCTCAAAATTTGCACAGGCTCTGAGTGAGAGGGGCT ATGAGCTTGTTTCCGGTGGAACTGAGAATCATCTAGTTTTGGTGAATCTGAAGAACAAGGGTATTGATGGCTCCAGAGTT GAGAAGGTGTTGGAATCAGTTCACATTGCAGCAAATAAAAACACCGTTCCGGGAGATGTGTCTGCTATGGTTCCTGGTGG CATCCGGATGGGAACTCCTGCTCTTACTTCTAGGGGATTCGTTAAGGAGGATTTTGTTAAGGTAGCTGAGTTTTTTGATG CAGCTGTAAACTTGGCTTTGAAGGCCAAGGCAGAGAGCAAAGGAACAAAATTGAAGGACTTCTTGGCCACAATTCAGGAA TCATCTTACTTTCAAACAGAGATTGCAAAGCTTCGCCACGATGTTGAGGAGTATGCGAAACAGTTTCCAACCATTGGTTT TGAGAAGGCAACAATGAAGTACAAAGAATGA
Protein sequence (LotjaGi2g1v0330200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAMAMALRRLSSSIDKPLRPLFNASSVYYKSSLPDEAVYEKTTVTWPKQLNAPLEVVDPEIADIIEHEKARQWKGLELIP SENFTSLSVMQAVGSVMTNKYSEGYPGARYYGGNEFIDMAETLCQKRALEAFRLDPAKWGVNVQPLSGSPSNFHVYTALL KPHDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLDESTGYIDYDQLEASAKLFRPKLIVAGASAYARLYDYD RIRKVCDKQKAVLLADMAHISGLVAAGVIPSPFDYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVLYDYEDKIN QAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQALSERGYELVSGGTENHLVLVNLKNKGIDGSRV EKVLESVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVKEDFVKVAEFFDAAVNLALKAKAESKGTKLKDFLATIQE SSYFQTEIAKLRHDVEEYAKQFPTIGFEKATMKYKE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 14 | 515 | 502 | 0.0 | – | |
| PANTHER | 14 | 515 | 502 | 0.0 | ||
| PIRSF | 37 | 511 | 475 | 3.2E-169 | ||
| SUPERFAMILY | 42 | 507 | 466 | 1.49E-181 | ||
| Hamap | 53 | 506 | 454 | 42.947 | ||
| Pfam | 55 | 451 | 397 | 1.3E-210 | ||
| CDD | 57 | 467 | 411 | 0.0 | ||
| Gene3D | 58 | 503 | 446 | 5.4E-220 | ||
| Gene3D | 83 | 356 | 274 | 5.4E-220 | ||
| ProSitePatterns | 277 | 293 | 17 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
| Molecular function | Glycine hydroxymethyltransferase activity | Catalysis of the reaction: 5,10-methylenetetrahydrofolate + glycine + H2O = tetrahydrofolate + L-serine. | ||
| Biological process | Glycine biosynthetic process from serine | The chemical reactions and pathways resulting in the formation of glycine from other compounds, including serine. | ||
| Molecular function | Pyridoxal phosphate binding | Interacting selectively and non-covalently with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6. | ||
| Biological process | Tetrahydrofolate interconversion | The chemical reactions and pathways by which one-carbon (C1) units are transferred between tetrahydrofolate molecules, to synthesise other tetrahydrofolate molecules. |
Expression pattern of LotjaGi2g1v0330200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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