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LotjaGi2g1v0330200.2

Overview

Field Value
Gene ID LotjaGi2g1v0330200
Transcript ID LotjaGi2g1v0330200.2
Related isoforms 8
Lotus japonicus genome version Gifu v1.2
Description Serine hydroxymethyltransferase; TAIR: AT4G37930.1 serine transhydroxymethyltransferase 1; Swiss-Prot: sp|P34899|GLYM_PEA Serine hydroxymethyltransferase, mitochondrial; TrEMBL-Plants: tr|I3SY17|I3SY17_LOTJA Serine hydroxymethyltransferase; Found in the gene: LotjaGi2g1v0330200
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr2:80594515..80599284) extracted from Lotus japonicus Gifu genome v1.2.

TCTAACATGGCAATGGCAATGGCGCTTCGCAGGCTTTCATCTTCCATCGACAAGCCTTTACGTCCTCTCTTCAACGCTTC CTCTGTTTACTACAAGGTCCTCTCCTTTTCCATTTCAAATCAATTACCACTAATCATGTATCTATAGCTATGATGAACCT TATTCACCATTTTCTCTCAAATTCCTTAACCGTTTAACTACCTGGAACTCATTGTCTTTTGATTTTTCCATTGTAGTCCT CTTTGCCTGATGAAGCTGTCTACGAGAAAACAACTGTTACGGTATGTTCTGATTGTAAATGATAGTATATGATATCATCA TCATTCATCACTTTACTTTTATGATTCATGGCAAGGACTCTTGCACTTGATGATTCCTATGTACTAGTTAGTTATTCATG ATGTTTTCGTTTGAGACTGTTGTCTTTGCAGTGGCCAAAGCAATTGAATGCTCCACTCGAGGTTGTTGATCCTGAAATTG CTGATATCATTGAGCATGAGAAAGCTAGACAATGGAAGGTAAACTTTTCACTTTTCAGTGTTAACTTATCTTACTCTATA CTATTTACTTTTGCATCTTTTCCCCTAAAACCTTTGTGTTGAACTTCAAAATTATTCTGCACCTTTTTGTTTGATTTTGT GTCGTATGATGCAAAATATGATACTCAATTCCCCATCAATAGGATTTTTAGCTTTCAAAGGACTTAGCTTTTTTTCCCCA CTATTTTTGAAGGGGCTGGAGCTGATACCCTCAGAGAATTTCACTTCTCTCTCTGTAATGCAAGCTGTTGGCTCTGTCAT GACAAACAAATACAGTGAAGGATATCCCGGTGCAAGATACTATGGTGGAAATGAGTATGTTGGTCTTTTACTTTCTGTTT GCGATTGTAATGATAATTCATGGAAGCCAATGTTATCATTTTGGATTTTATATTTTGAGTGCCTAATTTGAACCAATTCT AAGATTATGGACATTTCAATTTCAGGTTTATTGACATGGCAGAAACACTATGCCAGAAGCGTGCCTTGGAAGCATTTAGG TTGGATCCAGCAAAATGGGGAGGTAAGAACATTAGAAAAACCAACCATTTTTATTTTTTGATAGATTGTACAACTACTAA CTTAGCTAGTAGCCTAGTGCTTTGTCTTTTGTCCTAAGCATGCAAGTATATATATATCTCTTGATTGGGTTTCATTTTAT TCTGGTTTTGAGTGGTTTTACTTTTTCTCAAAACATCAAATTAGCAACAGCTTGAACCATTGAAGTCTCCCATGACTTAC GGCATGTTTGGATCAACTTATTTCTTCTCAGAATCAATCCTGCCGCTCAAAAACTAATCACATGAGATTCTCCCCAAAAT TAATTTTGACTTCAGAATTAATTGTATAAGGATTTCCAAAGATGCTATTAGCTTGTTAGCTTGCTAAAATTTGAAGTGAT CTGCCTTGGACTTCTCTGAGTGTGGGGGATTTTTATATATATATTAGTTATTAGATAGATGGTGAGTTTTCTCATATGTC ATTGTTACCCCTAACTTGCAGTGAATGTGCAGCCTTTGTCTGGTTCTCCTTCCAATTTTCATGTTTATACTGCATTGCTA AAACCTCATGATAGAATCATGGCACTTGATCTTCCTCATGGAGGGCATCTTTCTCACGGTTACCAGGTATTATCAGCTTC CATCATTCATTTCCTGTTATAATCAAATCTACAATAAATGTATGCCTTGTTGGTCATTGTTGACATTTTTCTGGAATTTC ATCCAAGATTAGTTAGAAATAACTTTATAGTCGTTAATGAAAATTAAACTTGTTTACTGCGTACTTATATTTCTATTATT GTATTACAATTAATAAATCTTTTTAGATTATCATTAGATGCCCTCTTTATTTCTTTGTTCTTCTTTTTCCTCCCTCCAAG AAGCTTTCTTTCTTCATGTAAACTGTTTTCTGTTTAACTATCCTGATGATAAATTAACAAATACTAATTTCATTATGCAG ACTGACACCAAAAAGATATCCGCGGTCTCTATATTTTTTGAGACAATGCCATATAGATTGGATGAAAGCACAGGATACAT TGACTATGACCAGGTATCTTTGCAGTTCCTTTTATCATGGTCATGATCCTTTTTGCAATAATCCTCACTTTTGGGTTAGT TTTTTATACACAATTGGCTTAGTCCACTTAGTGCGAAAAGGCTTGGTAGTTGTTGTATTTATGCACTATTAACTTGATCA TACTCATTCGAAGTGTCCATTAAAGACTAGCTCTTAGAACTAGAAGATTCACATGATATACATGTGGAGAGTTTGGTTAC ATGCTGCATACATATGAAACGAACTCAGATAGTTTTTTTACCACATTACAATATCTATAACTAGTGACTGATGGTCTTAA GTTCTTAAAACCAACTAATGCTTAAAGATGATATTTCTGTAGCCACTAAATAAACCTTTTACTTTTAACTTGACTATGAG AGGCAATGGGAGTTGTTTTGTTCCACATTTCCGTTGCATCACTATCCAAAGTGGTAGACAATTTATTTGTCTTCTCGTTT CTCTTCTAATCTATTGCAATTTGGTGAGTGATTAACAATTAATCAAATTCAGTTTGCCCTGAGTGTGTCAATTCTCAATT TTGCAGCATACTTGCTCAGTTGCTCCTTAAGTTCAGAATAATATTTATGTACCATTTTTGAGTCAGCTTGATGTTTTTAT GACGTGAACAATTTTGAAATGCAGTTGGAGGCATCGGCTAAACTCTTCAGGCCAAAATTAATTGTTGCGGGAGCTAGTGC TTATGCCCGTCTATATGATTATGACCGCATACGCAAGGTAATTTGAAGTTAGCATAGAATGATAGAAAGTGGATGTGTTT CTTAGAATTTTTGGTTTTTAATTTGAATGGGTATCTGGAACACTCAGAGGGCTGAACTAATTGAACATGTTACAGGTGTG TGATAAACAAAAAGCTGTGTTGTTGGCAGATATGGCACACATTAGTGGATTGGTTGCTGCTGGTGTTATCCCTTCACCTT TTGATTATGCAGATGTTGTGACTACCACAACCCACAAGTCACTTCGTGGACCCCGTGGGGCTATGATCTTCTTCAGGAAG GGGGTGAAAGAAATCAACAAACAAGGAAAGGAGGTACATTCTTAACAATTCATTTAACAATATAGTGACTAACAATTTAA CAATTGTTTTTAATATTCTGGCTATTTATGCTTATTCCTACATAAGCTCATGGCTAACATGCAACACTATATTTTCTTAT GTCTTTGAAGGTGCTGTATGACTATGAGGACAAAATCAACCAAGCCGTTTTCCCAGGACTGCAAGGGGGTCCTCACAACC ATACAATTACTGGTTTAGCTGTTGCATTGAAGCAGGTACTGCATAGAGAAGATTATGATGAAATTTATTTTTCTGGAAAT TAAATTGTGAGTGACTAATGAAAAGGATCTATGCCAGTGTCTTTTTTTCTTGATATTGAGGTTTTTATATTGAATTGTAA TTTCAGCAGACAGTAAAATGGATATAAAGTAAGTTTTTTCATCATTTAGCTTAATAAGAGGGTCGGTTTGAGGTGTTGAT TTGGAGAGAGACATAGCTTTTGAATGTTACTGATTGGATCTTGAAAGAAAGTATGGAATGTGATGTATATTCATGAAATG ATTAGTTTCTTTTGTTTTTCCTTGTGTTGGTTCAGGCTACAACTCCAGAGTATAAAGCATATCAAGAGCAGGTTCTCAGT AATTGCTCAAAATTTGCACAGGTACATTGGGAAGGATAACTTAACTGCCTCTTTTCCCACATATTGGATCTTAATACAGC ACAAGGTTCAGTCTCCTTGCAGGAAAAAAGAGATTAACTCCATGTATTTTAAGTTTTAACACTAAATATGTTGCAGGCTC TGAGTGAGAGGGGCTATGAGCTTGTTTCCGGTGGAACTGAGAATCATCTAGTTTTGGTGAATCTGAAGAACAAGGTAACT AACAACTACTTTGACTTTCCAAATAAGCATTGTCGAGTCTATTATGCTTTGCAATTGTAACATTCAGTGCTAATAATTGT GTTACGGTCACAAACCTCACATTAAATTACAAATTATTTTTTGTGATTAATTCAAGATATCAACCCTCATAATATAAAGT GAGACTGGTGCTCTTTTTTCAGGGTATTGATGGCTCCAGAGTTGAGAAGGTGTTGGAATCAGTTCACATTGCAGCAAATA AAAACACCGTTCCGGGAGATGTGTCTGCTATGGTTCCTGGTGGCATCCGGATGGGTACATGCTTTTCATTGCTAATATAT TGATCTTGATTCCATATTCAATTACTTGAATTTGATCTTGATAACTCTTGTGGCTTTCAGGAACTCCTGCTCTTACTTCT AGGGGATTCGTTAAGGAGGATTTTGTTAAGGTAGCTGAGTTTTTTGATGCAGCTGTAAACTTGGCTTTGAAGGCCAAGGC AGAGAGCAAAGGTTCCTAAGTTTTCAATATCCTAATCCTTCATGAGTTTGTGTTTGTTTTATCTGGACAAAGCTAGTATA AGTTGCTGGGTGCTTGAATAAGCTTAACATGTAGTTGTGGGTGATTTTTCTTTTGAGCCAGGAACAAAATTGAAGGACTT CTTGGCCACAATTCAGGAATCATCTTACTTTCAAACAGAGATTGCAAAGCTTCGCCACGATGTTGAGGAGTATGCGAAAC AGTTTCCAACCATTGGTTTTGAGAAGGCAACAATGAAGTACAAAGAATGA
Download Genomic Sequence

CDS sequence (LotjaGi2g1v0330200.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCAATGGCAATGGCGCTTCGCAGGCTTTCATCTTCCATCGACAAGCCTTTACGTCCTCTCTTCAACGCTTCCTCTGT TTACTACAAGTCCTCTTTGCCTGATGAAGCTGTCTACGAGAAAACAACTTGGCCAAAGCAATTGAATGCTCCACTCGAGG TTGTTGATCCTGAAATTGCTGATATCATTGAGCATGAGAAAGCTAGACAATGGAAGGGGCTGGAGCTGATACCCTCAGAG AATTTCACTTCTCTCTCTGTAATGCAAGCTGTTGGCTCTGTCATGACAAACAAATACAGTGAAGGATATCCCGGTGCAAG ATACTATGGTGGAAATGAGTTTATTGACATGGCAGAAACACTATGCCAGAAGCGTGCCTTGGAAGCATTTAGGTTGGATC CAGCAAAATGGGGAGTGAATGTGCAGCCTTTGTCTGGTTCTCCTTCCAATTTTCATGTTTATACTGCATTGCTAAAACCT CATGATAGAATCATGGCACTTGATCTTCCTCATGGAGGGCATCTTTCTCACGGTTACCAGACTGACACCAAAAAGATATC CGCGGTCTCTATATTTTTTGAGACAATGCCATATAGATTGGATGAAAGCACAGGATACATTGACTATGACCAGTTGGAGG CATCGGCTAAACTCTTCAGGCCAAAATTAATTGTTGCGGGAGCTAGTGCTTATGCCCGTCTATATGATTATGACCGCATA CGCAAGGTGTGTGATAAACAAAAAGCTGTGTTGTTGGCAGATATGGCACACATTAGTGGATTGGTTGCTGCTGGTGTTAT CCCTTCACCTTTTGATTATGCAGATGTTGTGACTACCACAACCCACAAGTCACTTCGTGGACCCCGTGGGGCTATGATCT TCTTCAGGAAGGGGGTGAAAGAAATCAACAAACAAGGAAAGGAGGTGCTGTATGACTATGAGGACAAAATCAACCAAGCC GTTTTCCCAGGACTGCAAGGGGGTCCTCACAACCATACAATTACTGGTTTAGCTGTTGCATTGAAGCAGGCTACAACTCC AGAGTATAAAGCATATCAAGAGCAGGTTCTCAGTAATTGCTCAAAATTTGCACAGGCTCTGAGTGAGAGGGGCTATGAGC TTGTTTCCGGTGGAACTGAGAATCATCTAGTTTTGGTGAATCTGAAGAACAAGGGTATTGATGGCTCCAGAGTTGAGAAG GTGTTGGAATCAGTTCACATTGCAGCAAATAAAAACACCGTTCCGGGAGATGTGTCTGCTATGGTTCCTGGTGGCATCCG GATGGGAACTCCTGCTCTTACTTCTAGGGGATTCGTTAAGGAGGATTTTGTTAAGGTAGCTGAGTTTTTTGATGCAGCTG TAAACTTGGCTTTGAAGGCCAAGGCAGAGAGCAAAGGAACAAAATTGAAGGACTTCTTGGCCACAATTCAGGAATCATCT TACTTTCAAACAGAGATTGCAAAGCTTCGCCACGATGTTGAGGAGTATGCGAAACAGTTTCCAACCATTGGTTTTGAGAA GGCAACAATGAAGTACAAAGAATGA
Download CDS Sequence

Protein sequence (LotjaGi2g1v0330200.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MAMAMALRRLSSSIDKPLRPLFNASSVYYKSSLPDEAVYEKTTWPKQLNAPLEVVDPEIADIIEHEKARQWKGLELIPSE NFTSLSVMQAVGSVMTNKYSEGYPGARYYGGNEFIDMAETLCQKRALEAFRLDPAKWGVNVQPLSGSPSNFHVYTALLKP HDRIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLDESTGYIDYDQLEASAKLFRPKLIVAGASAYARLYDYDRI RKVCDKQKAVLLADMAHISGLVAAGVIPSPFDYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVLYDYEDKINQA VFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQALSERGYELVSGGTENHLVLVNLKNKGIDGSRVEK VLESVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVKEDFVKVAEFFDAAVNLALKAKAESKGTKLKDFLATIQESS YFQTEIAKLRHDVEEYAKQFPTIGFEKATMKYKE
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR11680:SF40
14 513 500 0.0 –
PANTHER
PTHR11680
14 513 500 0.0
IPR001085
PIRSF
PIRSF000412
36 509 474 3.1E-169
IPR001085
SUPERFAMILY
SSF53383
44 505 462 3.14E-181
IPR015424
Hamap
MF_00051
51 504 454 42.947
IPR001085
Pfam
PF00464
53 449 397 1.3E-210
IPR039429
CDD
cd00378
55 465 411 0.0
IPR001085
Gene3D
G3DSA:3.90.1150.10
56 501 446 5.3E-220
IPR015422
Gene3D
G3DSA:3.40.640.10
81 354 274 5.3E-220
IPR015421
ProSitePatterns
PS00096
275 291 17 -
IPR019798

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003824
Molecular function Catalytic activity Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
Subterm of
GO:0004372
Molecular function Glycine hydroxymethyltransferase activity Catalysis of the reaction: 5,10-methylenetetrahydrofolate + glycine + H2O = tetrahydrofolate + L-serine.
Subterm of
GO:0019264
Biological process Glycine biosynthetic process from serine The chemical reactions and pathways resulting in the formation of glycine from other compounds, including serine.
Subterm of
GO:0030170
Molecular function Pyridoxal phosphate binding Interacting selectively and non-covalently with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6.
Subterm of
GO:0035999
Biological process Tetrahydrofolate interconversion The chemical reactions and pathways by which one-carbon (C1) units are transferred between tetrahydrofolate molecules, to synthesise other tetrahydrofolate molecules.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi2g1v0330200.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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