Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0331600 |
| Transcript ID | LotjaGi2g1v0331600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Auxin-responsive protein; TAIR: AT2G22670.1 indoleacetic acid-induced protein 8; Swiss-Prot: sp|Q38826|IAA8_ARATH Auxin-responsive protein IAA8; TrEMBL-Plants: tr|I3SD28|I3SD28_LOTJA Auxin-induced protein; Found in the gene: LotjaGi2g1v0331600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:80718646..80726190) extracted from Lotus japonicus Gifu genome v1.2.
GCACCTGTTAACAGCGACAAGATATTTAATTTCCTGTCGAGAGAGAACAACAACAACCAAAGGTCTTGATTTCTCCGTCA GAGTCAGTCAATCTCAACCGTCCAACGTCATTCTCGGGTCCAAATCACCATCATCACCTTCCCAAAACAACCCTGCTTTC CCTTCTTATTTTCCGTTTTACCCCTACCTTACCCCAACCAAACCCGAGAGAGATAAACAAATAAATAAACTTTTGGTTTT TCCGTCTCTCACCCCAAAAGCTTTTGTTGCTTTCTGCTTAATGGAAGGGCCATAGCCTTTTCAGTTTTCTCTCTCTCACA CACACTCTCTGCGTTTTCTTCACTCTCTTCTCCGTTTTGCATTTCTCTGTTAACAACCAAAATCGATTCTCTTCTGTTTC TGATCTACAAACCTTCCTTAGGTGCGTGCTTCACAATTTTCTCCTCTCTGTTTTTGCTTTCCTCAGGTAGAATGTGCCTG ATTTTTGCTTTTTTGAAAATTTTTCTAAGGGTTTGGTTTTGTGTGCTTGTGGATCTGTCACGCTATTTTTGCTTACATGT ACTTCTCTTGCTATTTTTGTAGATTTCATTTTGTTTAAGATATTAATTACTTAATTATCACTTCTTTACGTGTCTAATTT TCCGTTTTTTCTGATTAATTATTATTAAATCTTCAATAAATACAACTCATGCATGCTTCTACTTTTTCTTTTCAAACAAT TTTTGTGAGATTCTGTAGCATTTTCCTGTGAGTTCTTGTTTGAATTTCTGGATAATGGCGTGATCGTTACAATTGGGGGA ATATTTTGAGTATTGTGTTGATTTTGTGGTTTTTTGTGTTTTTTGGAGTGTGATGACTCCGCCGGCGGTGGTTACGGAGG AGGAAGGGCGGTGCAAACTCACGTCGACGACGACGGTTGCGACTGCATCTTCACAAGTGGACTGTTTTGAGTTGAAGGAA AGGAATTACCTAGGGTTGTCGGATTGTTCATCAGTGGACAGTTGTGCTTCTACTGTACCTAGCTTGTGTGATGAGAAGAA GGGGAACTTGAATTTGAAGGCTACGGAGTTGAGGCTAGGTCTTCCTGGTTCTCAATCTCCTGAGAGGGATCCGGAGCTTT TCTCTTTAAGCTCGGCGGCGACGAAGCTCGATGAGAAGCCGCTGTTCCCTTTGCTTCCTACAAAAGATGGAATCAGCTCG ACGTCGCAGAAAGCTGTGGTTTCCGGTAACAAGAGGGGGTTTGCTGATACCATGGATGGGTTTTCTCAGGTCAGAATATG TCAAGTTTTCGGTGTAGCTATTGAGAACTGAGAAGAGGGTGTTTCATGCATTGTTTAGTGATCTGAGTCTGATTCCTCGA AATCTTTGTTGCAGGGGATAAATGTAATGCTGTCTCCGCGACCTGCTGCTGCTCAGCCCACTACTATGAATGAAATGCCA AACAAGATGTTGCAAGAACGGCCCTGTGCTGCTAATGGAACTGGACATAACCATACAGGTGCTTCTATCAGTGGCAATGC ACCGGCTTCTAAGTAAGTAAAATCTGCCAAATCAAGTAACAATGATTTCCAGGAGAAACTAGAAGTTGGACAAAAGCCTA GAATTTGATTTTTCTTGTGTTTATAGTTCTAATGATATTGTAATTTCTCATGTATGGCAGGGCTCAGGTTGTTGGTTGGC CTCCTATTAGATCATTTAGGAAAAACTCTATGGCCACCACATCTAAGAACAACGATGAGGTGGATGGAAAACCAGGTCTC TCTGCACTCTTTGTGAAGGTTAGCATGGATGGTGCACCCTATCTTAGGAAAGTGGATCTAAGAAGTTACACAACATATCA GGAGCTTTCTTCTGCCCTTGAGAAGATGTTCAGCTGTTTTACCCTAGGTGAGGATTTATTTTAACCGCAAAATCGGTTTT CCCTTGATTAATTTAAATTTAATTCGGTGGTTATTTTATTTTTATTCTGAAATGTACCCTAAGTACTTGTGTTCAATATC AGGTCAGTGTGGTTCCCATGGAGCTCCAGGAAGAGAATTATTGAGTGAGAGCAAGCTGAGGGACCTTCTGCATGGCTCTG AGTATGTTCTTTCTTATGAAGATAAAGATGGAGACTGGATGCTTGTAGGGGATGTACCATGGGAGTAAGTTGTTTTAAAT TATCTCTCTGCTCTGTCTATCTTTGTCATATCATCATATTTTTTCAAGTAATAGTAACTATATTTGTTTGAGACAATAGA GTATAATCTTGAAATAGTACGTTGACATTATTCGTTATTAATCTGTCACATCTGTAGTGCCTTTTTGGTTACAAGTGATT TTTCCATGTGTTGCAGTCAAATGTAAGTTTGCATGTTGAAAACTCAGTTTTTCTCAACTATATTTTGTTTGACTAAATTT TTCTGTTTGCCAAACATTTCCATTAAGAGAAGTGAAAATTTCTTACTTTTCCATTGAGAAGAATTCATTGTGTGGCAGCC CCAAAAATATAATTATGGATTATGCTGGATGTCACAAAACCTTGTTAGACAAACAACAACGATGTGTAGTCATCATTTTT CTACTTTAATTATTGGCATCATTTCCTGTTATTAGTTACTCACTGCATGTATTTCCGAAAGCTATTGGTTCCTTTTGATT TTGTACTTCAGTCGTGTTGTGCTATATAGCACTTCTCTAGAAATATATTACACTTGCAAAATTTATTATTACCTCATCAT TCAAACAAAAACAGTGCTTTCAAACTTTCACAGTATGATGTTCTAATACAAATAATTCCACCAAAAAATGCATTTGATCC TAATTTTGTACCTGTAACTTGTTGCCATTTTGCCTGGAGTCAATAAAATTTAAAATAATTGTGGGCCATCTGGATTACTT GTTTTAGAATTATGGATGCTGGGAGATTAAGGTGTGATGCATATTAAGAGTGAGTGATATATGTCAATCTGGTTGGGAAG TCCTGAAAGGCTACTTGATTGATGTTCTTGTATTGAGTAGCTTTATCCCTAAATCAATTTGCATATTCAAACTAATCTTG TTGGGAAGTCCAAAGTTGTTTTGTCAGTAATTCCTGAATATAGCTCAACTTTGTGAACTTCACTATCATCTAGAAGGGAG GCACTTAGCTTACTACGATAAAAATGTGAAGTCTAATTACTATTTACTGCTGCACTTATGTATCATCTCTTTCTTCTCTA AACCAACTCTTCTAATTGAGAGAGTGGATTATAGAGATACAAAATAGTTGTTAATTCTTCTAATCAAGAAAGAGACAGTA GAGAATGATAATGGTTATCAATAGTCATTATTTGAATTAAATAGCGGATACTTTCATGCTTCATGTGCAATTGGGGGGAG GGGGAGTTGTCATGGCAGCTAAGAGTTGATATTGTTGATGTTATGCATCAATTAATTATTTGTTTATGCATAAAATGAAA AAACAATGGACATTGCCTGCCGTTGCTTTTCTAATGAATTGCAACTCAATTATAAAAGTGAACAGAAAGTTGTCGTTTCA ATGAAGGAAAGTTTTGTCAGAAGTTTAGAGCTTGGCATGCACGATATATTCATATTTTTGCAATCCAACTTCAGAATTTT CATGTTACATCAACAGAAAGAATGTAACATACAAAATACTGAAGTGTATTTAGAAATTTTTAATGTCGTAATATTTTCCC CATTTCAGATTTGATGCTCTATTTTTTGAATATGAGAGAACCCCTGTTACTTAGGTGGATGCTACAAGGAAGAGGTTGGG AATTATTAGATTAACATGTGGGCACGGAGGTTAGAGTGGGGAATATTGAAGATAATGATCTGATTCATAGTGGTGGTGAA CTAGCGATTAACGTGTATGTGACTGTGAATGAGTGAGAAATGGGTAATTTGGTTGGGGTAAGTGAGAATAAATGTGTGAG GAGGGAGAGTATGGCTAGGCAATGAGACAATCCAAGTTCCTATCTAAGTATTATCTTTTTATGTTTGCTATGGACTTCTT CAATGATGTCAGACTAATGAACATGATAATTGTTATTTGCATCACTGTCTTACTCTAAACTGCAACTTTACCTTTTCACA GGATGTTCACTGAGACTTGCAGAAGACTGAAAATCATGAAGGGTTCTGATGCCATTGGCTTAGGTATGTATTCTCTGTTA TGTTTATTTTACAGTCACTAAACGAAATACAGACAACTGTGATGTGAATTGATAAATTAGGACCTTATCCTTGAACAGTT ATCATGTGTAGGAACTAATAATCTACAGCAGATTATGGTCCTGATGTGTTGAAATTAGATCACTGAGTCATGGCAATGCC AGTGTATGCTATGTTATGGAATATTTCTAACATTATTTTGGAATTAAAGTACAAAGCTGAATGAAAATATGTTGTGATAT TTAAATTGTAATATTTTATCCTTTTCTAGAATCTAGATTGTTTTCTACCTTGGTTTTCAGTCGAACAATCATTAGAACTA GTACTGCAAGTCAATATATACTGGATTTAAGGTGCAGACATACCCCTTAAAGAAAACAGAGAAATATAAAGACCTTATGT AGTTATGTTAGCAATTCTATCAATATTACCTTATAACCTTGATTTTTAATCTACTTTTAAACCAATTGTTTTGATCTGTA CCTTCATTTAAGAATTCATGTGCCACAGTTCGCTGAAGTAGATTTTCTTTCCTCAGCTCCCAGGGCCATGGAAAAGTCCA AAATCAGGAGTTAGAGGGTTTCCTTGACTGATGGTTGCCTTTTGTCCAATCAAGTTATATTAATGCTGGATCCGAGTAGT GTGGAAAGCAAAGGATGATGACAAATTCCGTGGAATACTTCGTTGTTCTTTGATTTTAAGTTCTCTAATGTTTGTTTTGT CTGTTCCTACTATAATTATTTTATGAAGCTACCTTTGAAGTTTAGTATTTGTGGAGTCTGTAATCATTATAGGAACCTGT TTGTGTGGATGAATTGAATGCCTGTTACAGCCAACATTGGTTCTAAGTTCTAACATTATTCTGCCATCCCTCACCCTTTA TTTCCTTCAAATCTTTATTTCATGTCCATTCTTTTTGAATTGAATTGTTCCTGCTGTGGGTGAGTAAGGATCGTGCCCAA TATAAATGAGAATTTCTTCTTTTTTGTTACGGGCCTCTTCAGATATAGTATTCAAAGTTCAATTAAAAGGAATTTTGATT GCATAAGGGTGATGCATATTTAACTGTCCATGCTTCTAAGCTTAAAATCATTTACAAGGGGGAACATTTTCCCTAATTTT CAACTACAAGCCCAATATGCCGTTTTTTTCTTTCTTTCTTGGATCTGTTGATTATTTTGCTATGGGTTTTCTCATATTGC CAAGAATAGTGAATTATCTCATATATTTTGAATAAAGGGCATCTTGATAAAATAATATTTTTAAAATAAAATAAAGAAAT AAAATGTAAAGAGACAGATGTATAAGCACAAAGAAGTTTAGTTTTCCAGTAGCTAATTATGAATATTTTTTCTTCTCTTG AACAATATTTGCGTGACAGACATGTCCTCAAATAGAACCTCTAAGTCCTAACATAAATCGGAAATTGAGGGTCACACTAA AGATATGTAACCATTAGACGCACTACTGTTATCCACAAATTCCTCTGGTTGTCTCATTTATTTGTAATTTTGATAGTCAT CCCCAGTTCCTCACGCACAACACTTCCAATTGATCGAACTTTACAAACATCATATCAACCCTGAAAAACCTAAATTTTTA ATCCTAATGGATATTTTTCCCCATCCATTTACAAAAGAAAATATGAAGGAAAATCAGGTGCACGCAAGACTAGCCTTTGA ATATGAGCCCTATGCTCAGTTCATTTAGAATTTTGAATGTTGGAATATTTTCCTCTTTTCAGATTTGATACTCTATTTTG ATTATGATAGAACCCCTGTCACTTATGTGGATACTACAAGGAAGAGGTTAGGAAGAAATAGATTAGCATGGGGGTAGGGG GGTTAGAATAGGGGATATTGAAGATGATGCTTTGCTTCATAGTGGAGGTGAACGAGTGATTAACACGTACATGACTGGGG AATGAGTGAGAATGGGGATATTTGGTTGTGGTATGTAAGAATAAATGTGGTGAGGAATGAGAGTAGGGCTAGGCAATGAT TGAGTAAAGATTTGAGGCCTTTGGGAAGGGAGGGAAGAAGAATATGCAACTCCTGTTTACAAAGAAAAAGAAATCCAAGT TCATATCGTAGTATTAACCTTTGATGTTTGCTATGGACTTCTTCAATAATGTTAGCTTAAAGAACATGATCATGGCTATG ATTTTGCTGCTTAATAGAATTTAAGCCTGCTTCATGGGCTTGTCTATGCAGGCATCAAGTGTTGATGTAGACTAAAGTCT TTCTCTATACCAAGAAAATGGACTGAATGATTGATGGAATGAGGTTTCTTCTTTGTTCTTGTTTGCATCACTCACTGACT CTAAATGCAACCTTACCTTTTCGCAGGATGTTCATCGAGACTTGCAAAAGACTAAAAATCATAAAGGGTACTGATGCCAT TGGTTTCAGCACGTATTCTCATTGATATTCATTTTACAGTCACTGCACTTAATATAGACAACTTTTCAAGTTAATTTATT AATTGGGACCTTCTGCTTGCGACTGTTACCATGTGCAGCAAGTAGCAACTTATAAACTGCAGCAGATTATGATCCTAATG TGTTCAAATGAAGTCACTGAATCTTGACAATTTCAATGTATGCCATGTCATGCTGCAGATTATACTGCAGCAGATTATGC TGACTTTTTCCAAAAAAAAAACCAGAGAGAAATAGAAAGACCTGATGTTAGCAACTCTATCAATATAACCTTGATTTTAA TTCAAATTTTAACCCTCAGTAATATAATCTGTACCTTCACATAAGATTTTATGTGGCCACAGTTTGCTGAAGTAGATTTT CTTTCTTCTGCAGATCCCAGGGCCATGGAGAAGTCGAAAAGCAGTGGTTAGGGGGTTTCCTTGACTGCAGACTGCTATTT GTCCAATCAAGTTCTAATGCTGGATCTGAGTAGTGTGAAAAGCAAAGGATGATGGCAAATTCCCTGGAATAGGTGGTTTA TCCGCACTTGGTTGTTATTTGATTTTAAGTCCCTGTACTGTTTGTGATATTTGTTACCACTATAATTATTTTATGAAGCT ACCTTTGAAGTTTAGTATTTGTGTAGTCTGTAATCATTATAAGAAACCTGTTTGTGTGGATCAATTGAATTCCTGTTACA GCCAACTTACGGTTCTAACATTATTCTGTCATCTCTCACCATTTATTTTCCTTCAAATCTGTATTTCATGCCCATTTCTT TCTGAATGAGAATTTTCCTTTTTCGATCTCTTCAGTTTTAGTATTCAGAAGTTTTTTAAAGGGTTGATTGTATGAGGGTA AGACCATAATTATGGCGGTGTTGGACAGTCGCAAAAGAAGGGAGCCTTTGACCACACTAAACATCAAGTCCAGCAATGTT TGCTGTTCCAGAAAGCATAGGACTG
CDS sequence (LotjaGi2g1v0331600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACTCCGCCGGCGGTGGTTACGGAGGAGGAAGGGCGGTGCAAACTCACGTCGACGACGACGGTTGCGACTGCATCTTC ACAAGTGGACTGTTTTGAGTTGAAGGAAAGGAATTACCTAGGGTTGTCGGATTGTTCATCAGTGGACAGTTGTGCTTCTA CTGTACCTAGCTTGTGTGATGAGAAGAAGGGGAACTTGAATTTGAAGGCTACGGAGTTGAGGCTAGGTCTTCCTGGTTCT CAATCTCCTGAGAGGGATCCGGAGCTTTTCTCTTTAAGCTCGGCGGCGACGAAGCTCGATGAGAAGCCGCTGTTCCCTTT GCTTCCTACAAAAGATGGAATCAGCTCGACGTCGCAGAAAGCTGTGGTTTCCGGTAACAAGAGGGGGTTTGCTGATACCA TGGATGGGTTTTCTCAGGGGATAAATGTAATGCTGTCTCCGCGACCTGCTGCTGCTCAGCCCACTACTATGAATGAAATG CCAAACAAGATGTTGCAAGAACGGCCCTGTGCTGCTAATGGAACTGGACATAACCATACAGGTGCTTCTATCAGTGGCAA TGCACCGGCTTCTAAGGCTCAGGTTGTTGGTTGGCCTCCTATTAGATCATTTAGGAAAAACTCTATGGCCACCACATCTA AGAACAACGATGAGGTGGATGGAAAACCAGGTCTCTCTGCACTCTTTGTGAAGGTTAGCATGGATGGTGCACCCTATCTT AGGAAAGTGGATCTAAGAAGTTACACAACATATCAGGAGCTTTCTTCTGCCCTTGAGAAGATGTTCAGCTGTTTTACCCT AGGTCAGTGTGGTTCCCATGGAGCTCCAGGAAGAGAATTATTGAGTGAGAGCAAGCTGAGGGACCTTCTGCATGGCTCTG AGTATGTTCTTTCTTATGAAGATAAAGATGGAGACTGGATGCTTGTAGGGGATGTACCATGGGAGATGTTCACTGAGACT TGCAGAAGACTGAAAATCATGAAGGGTTCTGATGCCATTGGCTTAGCTCCCAGGGCCATGGAAAAGTCCAAAATCAGGAG TTAG
Protein sequence (LotjaGi2g1v0331600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTPPAVVTEEEGRCKLTSTTTVATASSQVDCFELKERNYLGLSDCSSVDSCASTVPSLCDEKKGNLNLKATELRLGLPGS QSPERDPELFSLSSAATKLDEKPLFPLLPTKDGISSTSQKAVVSGNKRGFADTMDGFSQGINVMLSPRPAAAQPTTMNEM PNKMLQERPCAANGTGHNHTGASISGNAPASKAQVVGWPPIRSFRKNSMATTSKNNDEVDGKPGLSALFVKVSMDGAPYL RKVDLRSYTTYQELSSALEKMFSCFTLGQCGSHGAPGRELLSESKLRDLLHGSEYVLSYEDKDGDWMLVGDVPWEMFTET CRRLKIMKGSDAIGLAPRAMEKSKIRS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 31 | 345 | 315 | 2.7E-155 | – | |
| PANTHER | 31 | 345 | 315 | 2.7E-155 | ||
| Pfam | 71 | 338 | 268 | 2.7E-88 | ||
| Gene3D | 222 | 342 | 121 | 1.5E-42 | – | |
| SUPERFAMILY | 227 | 328 | 102 | 2.31E-20 | – | |
| ProSiteProfiles | 227 | 331 | 105 | 28.021 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi2g1v0331600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…