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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0332300 |
| Transcript ID | LotjaGi2g1v0332300.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein family; TAIR: AT1G63230.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q6NQ83|PP247_ARATH Pentatricopeptide repeat-containing protein At3g22470, mitochondrial; TrEMBL-Plants: tr|A0A072UAV5|A0A072UAV5_MEDTR Pentatricopeptide (PPR) repeat protein; Found in the gene: LotjaGi2g1v0332300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:80814168..80819965) extracted from Lotus japonicus Gifu genome v1.2.
ACCAATCAACTTACTAAATATGTTTCATAAAAAATCAACTTACTAAATAGAAACTTAAAATAAAATAAAAACTAGTTACT AAGTAACAAATATTGAATGAGGGTTTGAACAAGTCCATTTGGGTAAATATATATCCATCTTAGAAACACCGGTGTAAATA AAGCCCTTTCCGCCAATTGCAACCCTCTCCGACGCCGTGCTCCGACGCTGACGCTGTGCCTTTCCTCTTCTTACAATGTC GTCGTGGTTGTCATTGTTCAGGTTAAGAAGGAGGTCTCTGTTTCTTTCTAACGCTACTTGTCTTCTCTGCTCTCACTCTC ATACTCACACTCTACCCCATTCCGTTGCTGATGTTGATGTTGATGATGCCGTTTCCTCCTTCAACCGCTTCCTCCAGATG TTAGCATTCCCTTCCCACCCATCATCGAATTCAACAAGATTTTAACTTCCCTCGTGAAGATGAAGCATTACTCCACTGTC ATATCCCTTTCTCATCAAATGCAACTCAAGGGGATTATGCCTAACTTTGTCACTTCCAACATCTTGATCGATTGTTACTG CCATCTAGGTCAAATCAATTTCGCTTTTTCTGTATTTGCCACTATTCGCAAGAGGGGTTATCAACCAGATGTCTTCACCT TCGCCACCTTGATCAATGGATTTTGTCAAATGGGACAAATAAGACCTGCCCTGCAGTTGCTTAGACGAGCCGAAGACGAC GAATTGGTTCAACTTAAACCGGATGTGGTGATATATTCATAGCATGTGTAAGGACAAACTTGTAAGTCATGCTTGCCATT TATATTCTGAAATGCTTCACAGGAGAATTTTTCCTGATGTTGTCTCTTACAGTTCCTTAATATATGGCTTTTGCATTGTG GGTCAATGGAAAGAAGCAATTGGGTTTTTAGATAAAATGATATCCAAAAACATGGTCCCAAATGATTCTACTTTTAATAT ATTGCTCCATGCTTTATCTAAGGATGGAAAGGTGGAAAAAGCTATAAATGTGCTAGTTGTGATGATAAAAAAAGGTGTGA AACCTTCTGCTGTTACTTATAACTACTTGATGGAAGGGTATTGCCTAGTTAACGAAGTAAGCAAGGCAAAAGATATATTC AACTCCATGGCCCAAAGGGGAGTGACTCCTAATGTTCAGAGCTACAATGTCATAATTAATGGATTATGTAAGACTAAAGA GTTGAGTGATGCATTGAATATCTTAGAACAAATGCATTGCAGAAAGGTAATTCCTAGCATAATAACCTACAATTGTCTTA TTGATGGTTTATGCAAATCAGGGAGAACCTCTGATGCTTGGGAGCTCGTAGATGAGATGTATGCAAGTGGTCTACCTCCT GATGTAATCACTTACAATTCTCTATTGGATGCTCTATGCAAAAAATCGTCGTGTTGACGAGGCAATTGCTTTAATCAAGA AAATTGAAGACCAGGGTATTCAGCCAAATGTGGTCACATATAGTATAGTTATTGATGGATTGTGTAAGATTGAAAAGGTG GATGAAGCCTTGAACCTTTTAAAAGAAATGCATTGCAAAAAGATTATTCCTAATACAGTAACCTACAGTTCTCTTATTCA TGGTTTGTGCAAAACAGGGAGAATCTCTGAAGCTTGGGAGTTCGTAGATGAGATGCATGAAAGTGGTCAACCTCCTAATG TATTCACTTACAATTCTCTATTGGATGCTCTATGCAAAAGTCGTCGTGTTGACAAGGCAATTGCTTTAATCAATTGAAGA CCAGGGTATTCAGCCAAATGTGGTCACATATACTATAATGATTGATGGATTGTGCAAGATTGAAAAGGTGGATGAAGCCT TGAACCTTTTAAAAGAAATGCATTGCAAAAAGATTATTCCTAATACAGTAACCTACAGTTCTCTTATTCATGGTTTGTGC AAAACAGGGAGAATCTCTGAAGCTTGGGAGTTCGTAGATGAGATGCATGAAAGTGGTCAACCTCCTGATGTAATCACTTA CAATTCTTTCTTGAGTGCTTTATGCAAAAGTCATCATTTTGACAAGGCAATTGCTTTAATAAAAAAAATTATAGACCAGG GTATTCAGCCAAATGTGTATTCATACAATATAATGATTGATGGACTATGTAAAGGTGGAAGACTTAAGGATGCAAAAAAG GTGTTTCAAGATCTGTTGATTAAAGGATACAATTTTGATGTCTTGCCGTATACAGTTATGATCAATGGGCTTTGTAAAGG GGGTTTGTTTGATGAAGCATTGGACTTGCTGTCAAAAATGGTAGACAAAGGTTGCATTCCTGATGCTTTGAATTTTGAAA CAAACATTCACGATCTATTTGCAAAAGGTGAGAATTATAAGGCAGAGAAACTTCATGAAATGATTACTAAAGGTCTACTG TAAGAGCAAACCTAGGTAAGATGCTTTCTAGTTACATGTCAAGTTATTTTTTAAATTTTGAAACCTTGATGTTTTCTATC TAACTATATTATTTCATGATGAATATCTGGTTGCAAGCACAGAGTACACTTGCTGGTTCTGGATCAGCTTCAGTGGCAGT GAAATATAGGTGGGTCCTTTTCAAAAGCAAAGTATGTGATTTGTGCAGAATCTACTTTATCATCTTACACTTGAATCAAG TAGTTAGAAGAGAAGTATTCGTATGAATTGATAAATTTCAATTTTACATGAATTTGCTATGTAACCCATAGTGCTAGTAG GGGGAAACATATGTATCGTTTAGAAGACATGTTAGAATAGGACATAATCCAATATAAGAGTTATGTCAATATTTAATGCA TATTAGAAGTAGAATAGAATAGGACAAGATATTGCATTTTGGTTCAATTAGAAAGGGTGGAACAGAAATAACAGCACAAC GCAGCCTATCATGTTTCGCTCTGCATTTGTATGTTGCTGCCACTTTATAGTACTTAAGCTTTCTATTTGGTTAGATTATT GTCAATTTTTTCCAGCTTTTATTTTATTATATTTAATTCATTTTTTAATATGTACTTACTATCTGTGCTTCAGTAGGATG ACAATATATTTGAAATCTCTGTGAATGTGTGCATCAATACATTACACATCTGCAGTCTGAGACCTCAAACATCAAGTCGG GTTTCAATGTTTCCTTTCATTTGCTGTTTGTCATGTTTTGTTTGGTAGAAAGGAAATGGAATGAACGGAAGGGTAAATCT GTGTTTTCGGAGTAAACTTTGGTCTTGATACCTGCAACATTTCCCTTCCCTTCCTCCCATTTTGTCCTTGCCAAACATTT TGTTACTGTTTCATGAAGTTGTTGAGATATATTCCTGGGCTCATTTAAAGGATTGAAGAACAAAATAATATAAGGCAGTT TTGACTTAGTTAGCAAACAATTTTAATCATCTCAATCATGCTCTTGTCAGGCTTGTAAAGCTATAGCGTAAGAGTTGCAA GACTAAATCCTTTCCTTCTTTAAGCTGCTTATTGCTAATCAGCGATTAGAAGGTTTTATCTCTCAACCTGTACCTTTTTC TCGAAGTGTACTGTGTATGAGGGTATTCATGGATGGTGATATATCATATATTAAACCCTTCATATGATGTATGTGTCAGT CACAAGACTAGTTAGGTCCATTTAGTTATGACTATTTCCTAAGGATTGATTCTTAGGTTTGTAATAGTTCTTTATACTGC AGTAGCAAGGCATTAGTCTTTTATCTTTGAAAATTTTCTAGGACTTGATTTGCATTCCTATTTCTTTTATTAATTGATCC CAGTCAAAAGTGTTTTCCAAACCAACAAATGGTATGAAGCCAAGGACTTTGTTTGTGATTACTTTTTCGAGTTGTATCTT TTAACTTTATTTGTTTATGTTTACTATCATGCAAAGATAAAGCTCCGATCCTTGATATTTAGTTTTTTCTTCAACACTGT TAAAACGATCTGTTTTCTCAAGGATATATAGTTATTTTAATGATAATTTTACTCAAGTTCAAGTTACTTTGTCTTATTGG AATTTGATGTTTTAGATGGGAGATGTAGCTAAGGACCTTATAGCTGGGACTGTTGAAGGGGCAGCACAATTGATAGTTGG ACACCCATTTGACACAATCAAGGTCAAGCTCCAAAGCCAGCCAACACCAATCCCTGGCCAGCTTCCAAGGTATTCTGGTG CAATTGATGCTGTCAAGCAGACACTAGCAGCTGAAGGCCCAAGGGGCTTATACAAAGGTAGGGGTGCTCCACTTGCTACA GTAGCCGCCTTCAACGCTGCCCTATTTACGGTTAGGGGGCAAATGGAGGCATTGTTCAGGTCCCATCCCGGCGCTGGAGC TGGACTTGCTGTTTCCTTTCTAGTTTGCCCCACTGAACTGATCAAGTGCAGGTTTCACTGATGGCGTTTTAATTGTCATG TTTTAGTCACATTTTCTGTACATTCATTTTATCAACTTATGTAGATTTTGTCCTCTTTGATAACAAACAAAAAAAATCTG ACTATTAAGCTTGTGTTAGTCCTGCAGCAGCCAATGCAAAACTGGTCGTATAACCGACCTCCTTAGTGGGATAAAGCTGA TGTTTATGTTTATTGATTTCTTTTTTTCTTGTTTTCTATGAAGCATCTTTGTTTAAAGTATTCATTTTAAGCGAATTAAA TCACACCTCTGATGGTTGACATGAAATCAGATAGCCAAAGGGACAAGCTGAATGAACTTAAGTGCATGTTTGGAAATTCT TCAACAATTTATTCTTAAGTCATAATCAGTTATGGTTGCTGAAGGCTTGACTGTAGCTTCCTTCAGGTTTTTGGTTTACG GAACCGGTGTTGTTAAAAAGTGATTCAAGTAGATGACTAGAGAAATCCAAAATTTTCAGGTTCAATTGATGCTTTTAGAA GGATTCTAGCCTGAGGGCATCACAGGTCTTTATAAAGGTTTTGGTACTGCAATGTTCCGAAGTGTTCCCGTGAATGCAGC ATGCTTCTTGGCGTACAAAATGACAAGATCAGCTCCGGATGATTCTTTCATCAGCAAACTGGTAACATTAAGATCCCATT TGGGGGCATTTAGAGAAAATTCTCCATTCAGGTGAATAGATCTTCCTTCTTCAAGGCCCCCTCTTTTGCATTCCTTGCTT TTCTCCATTACTTGTTTTTCACTTCAACTTAACTGAACGTTGGGTGGAAAAGTTTAAGAAATAGAACCATCTGATTTGAT TAATCATTTTCAATAGACATGTCACATGAGATAATCATCTTAGGGTGATCCTTTTGTTGATGGATGCTCCTATTATACTC GTAGTCTCTGAAGAACGTGTTTCGCACGTTGGAATATGTAATTTGGCTTTCTTCTTAAGTATCAAATAATGTGTTGAATG TAAATACCAACATACACTAAATATATTAAATTACAGATAACCTATTGCGTATTTTTTTTTCCAAAAATTGAGCCACTTAA GGTTTTCATTTCAATTTCATCTTGAGTTGGAAGGGAAATATATCGTATACATCCCATGATATTGCTCTATACAAATACAT GGAAAATTGACAGTGCATATATTGTTGATTATATATGCAGTTTGATGTGAGTGTGTTTGTATTTATGTTTAAGTTGGCTA AAATTACATTTACTTCAATGACAGAAGAGGCATAAGTGAGCTAAAAGCTCCGTTGATAATATCATCAAAATAAAAAGTTG ATTTCTATTAGGAGTAAAAAAATTCCATAAACAAAATCAAAGATTCTAGAATACACCCTAAAATTAACAAAATTTTCAGC AAAAGTTATGGAGAAAAAAAAGTAACTGAAATCCACCT
CDS sequence (LotjaGi2g1v0332300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTGTAAGGACAAACTTGTAAGTCATGCTTGCCATTTATATTCTGAAATGCTTCACAGGAGAATTTTTCCTGATGTTGT CTCTTACAGTTCCTTAATATATGGCTTTTGCATTGTGGGTCAATGGAAAGAAGCAATTGGGTTTTTAGATAAAATGATAT CCAAAAACATGGTCCCAAATGATTCTACTTTTAATATATTGCTCCATGCTTTATCTAAGGATGGAAAGGTGGAAAAAGCT ATAAATGTGCTAGTTGTGATGATAAAAAAAGGTGTGAAACCTTCTGCTGTTACTTATAACTACTTGATGGAAGGGTATTG CCTAGTTAACGAAGTAAGCAAGGCAAAAGATATATTCAACTCCATGGCCCAAAGGGGAGTGACTCCTAATGTTCAGAGCT ACAATGTCATAATTAATGGATTATGTAAGACTAAAGAGTTGAGTGATGCATTGAATATCTTAGAACAAATGCATTGCAGA AAGGTAATTCCTAGCATAATAACCTACAATTGTCTTATTGATGGTTTATGCAAATCAGGGAGAACCTCTGATGCTTGGGA GCTCGTAGATGAGATGTATGCAAGTGGTCTACCTCCTGATGTAATCACTTACAATTCTCTATTGGATGCTCTATGCAAAA AATCGTCGTGTTGA
Protein sequence (LotjaGi2g1v0332300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MCKDKLVSHACHLYSEMLHRRIFPDVVSYSSLIYGFCIVGQWKEAIGFLDKMISKNMVPNDSTFNILLHALSKDGKVEKA INVLVVMIKKGVKPSAVTYNYLMEGYCLVNEVSKAKDIFNSMAQRGVTPNVQSYNVIINGLCKTKELSDALNILEQMHCR KVIPSIITYNCLIDGLCKSGRTSDAWELVDEMYASGLPPDVITYNSLLDALCKKSSC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 77 | 77 | 7.6E-22 | ||
| ProSiteProfiles | 1 | 24 | 24 | 6.445 | ||
| PANTHER | 2 | 130 | 129 | 2.3E-61 | – | |
| Pfam | 24 | 73 | 50 | 7.8E-14 | ||
| ProSiteProfiles | 25 | 59 | 35 | 11.992 | ||
| TIGRFAM | 27 | 60 | 34 | 5.0E-8 | ||
| SUPERFAMILY | 34 | 155 | 122 | 1.88E-6 | – | |
| ProSiteProfiles | 60 | 94 | 35 | 12.101 | ||
| TIGRFAM | 63 | 95 | 33 | 5.3E-8 | ||
| Gene3D | 85 | 160 | 76 | 3.5E-22 | ||
| Pfam | 94 | 143 | 50 | 5.4E-17 | ||
| ProSiteProfiles | 95 | 129 | 35 | 11.772 | ||
| TIGRFAM | 97 | 131 | 35 | 6.1E-9 | ||
| PANTHER | 107 | 214 | 108 | 2.3E-61 | – | |
| ProSiteProfiles | 130 | 164 | 35 | 11.466 | ||
| TIGRFAM | 133 | 165 | 33 | 2.1E-8 | ||
| Gene3D | 161 | 217 | 57 | 9.9E-19 | ||
| Pfam | 164 | 213 | 50 | 2.0E-19 | ||
| ProSiteProfiles | 165 | 199 | 35 | 13.822 | ||
| TIGRFAM | 167 | 201 | 35 | 2.9E-12 | ||
| ProSiteProfiles | 200 | 217 | 18 | 6.686 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi2g1v0332300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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