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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0333800 |
| Transcript ID | LotjaGi2g1v0333800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Basic helix-loop-helix transcription factor; TAIR: AT1G72210.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein; Swiss-Prot: sp|Q9C7T4|BH096_ARATH Transcription factor bHLH96; TrEMBL-Plants: tr|A0A1J7HDG0|A0A1J7HDG0_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0333800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:80990050..80992719) extracted from Lotus japonicus Gifu genome v1.2.
CAGCTCCTTGTGTTGTTTGTATGCTCATTTCTATATAGATTTGGGTCCCCCACCCACCCTCTCTTGCAGAGAGTCTTTGA CAGCACCTATGAAATTGTGATGAGGAGCATGTTTCCTTTTCTTCACTTTCTCATTGCTGAAAAGCATAGCACCTTTTCTG TCCTCCTCACGTGCTGCAAGCGTATCCTCTAACTAAATTACCCTTTTTCCAATTCTTAATTAACTCTCAAAACTGCATGC AGCATCAACTTGGATTTGCTATAAATTGTTTGTGTTGTTGGATTAAGAAGAGAATTCAGACCAACAGTTGAGGAGAGTAA TGGCCTTAGAAACTCTTCCATCTAGTGATTTTTCCAACTTCATCATCTATGACACCATCTCTGCTACTCCATTTAGCAGC TATGAGTATTCATCAGAGACTAGCTTGTTATTAGAAGAGAATAGAGTGAAACATCATGAACATGACCCTGCATTGGTGAC AAGAAAACGGCAATGTGGTGAACCAGAAGCCGTTGGCCAGAGGCGGAATTTCGCCGTGCAAGGGAGGAAGAAGAGGAGGA GAAAGACAAGGATTTGTAAGAGCAAGGAAGAGGCAGAGACTCAAAGAATGACTCACATTACTGTAGAAAGAAACCGCCGG AAACAGATGAATGAGCATCTTGCTGTTCTGAGATCACTCATGCCTGAATCCTATGTCCAAAGGGTTTGCATTTCATCCTC CCTTTTTACCCTTCTTTGTCTTGTGTCTCTCATAAGAATATTGTATGGAGAAATTTCACAATGGTGTTAGGAAATATGTT TTGTTGTCTAAAAGCTATTCAGTCATCTAAAAGCTACTCATACAAGCTTCTTCCCACAATTGATTCTAGCTTTAGAATCA ATTCTAGAACGATTTTCAAACATGCTAGTTTTTTAGTTTCAGAATTGGGCCTGAGCAAAGATAAACATACATGTTTGGTT CTCTGTTGAGGTCAACTGAATGCCGAGAGAACACTTTTCTTCCTTTCACCTTAGACACCTCGTAACGTGTAATCTCGATT TGCACCAAATGTGGTTTTCAACAGAAAGTGAAACATGCACAGATGTCTCCAAACAGCACATCATAGTGTTCTTTATTTAA CTCTTTTAAGTGTAATGCACTTATGGTGGTGCTAAATAATTGGAAGTTTGAATGAATATCATACTTTAGGCCACATGCAA AAGCTTCATAAGAATTTTCTTTTACCTTTAATTCTCAATGCAACTATACTAATCAAATGTACAATTTTTGTATGCTTAGG GTGACCAGGCCTCAATAGTGGGTGGAGCAATAGAATTTGTGAAGGAACTAGAGCACCTAATGCAGTCCCTTGAGGCTAAA AAATTTCAGCTTTTACATCAAGGAGTGGCACTAACCAGTACTGAAGAAGATAAAGCCATTTCCAACTCCATGATCATGAC ACCCCCTTTTGCTAATTTTTTTGTGCATCCTCAGTACACGTGGTCCCTGGCTCACAAATACACTTCTTCTTCTGAGACTG CAGCAGCAGCCATAGCTGATATTGAGGTTACTCTGATCGAGACACATGCAAACCTTCGAATTCTCACAAGGAGAAGCCCG AGGAAGCTATCAAAGCTTGTTGCTGGTTTTCAAGCACTCTTCCTCACTATACTGCATCTCAATGTCACCACTATGGACCC CTTGGTACTCTTTTCTATCAGTACTAAGGTATGAAACTGTTATGTTATGATTTGAGCCAAACAGTACTTTTTGTTGCTTC CTTTTTCTGCCAGGCCAGCATAGTTTGGAGAATTTTGGATGTAGATAATAAATTAGGCAAAAAGAGCCTTCAATTAGTGT TTTAGAATACTTAAAAGTCTCACATTGACTAAAGATATGAGTATGACTAAAACAGTTCTCATAAATGGTAGATTAGTTCT CACCCTTAACCCAGTTTTTGGGTACAGTTAAGCCTAATCCAATTTCTAAGACAGATGTTACTGTTGGTTAATTGAAATTG CTTGTCCCTGTATGAAGTTATGAAAATTTAGATGAACTCTTTTGCTAAAATTGACAATTCTTTTTTTGTTTTGTTGTGAA GGTTGAGGAAGGATGCCAGCTTGGTTCAGTAGATGACATTGCAACTGCAGTTCACAACTTGCTTAGAATGATTGATGATG AAGCTTCCCTTTGCTGTTAATCAGGTTTATTTGGTGAAATGACCAAATCAACCACTCCCCCTTCTAGAGAGAGAGGACAA AATATTTAACTAGAGCTTGAGTTTCTGCTTGTGTTAATTTGGTGTGCAGTTGAACTGTTTAGGTGTTAATGGGAATTGAA ATGCTGACATAGTTACTCTAATTTTCAATTTAGCTGTACTATCCTCCAGTCACCAAATAAAGTTTGTTTCTGAATCAAGA TAATGTGTTGTTGGTTTTGTTAATTAGTACTATAATGTGAAGTAAGTACTTTCATTAACAAATTTGAATAAAAGTGTGGT AAACAAAATTCATAAGCAACTGCATACCAAACCATTCTCCATCATATTGATTTTGTAACTTGGCTTAAAACAATCACAGA TTTGTGAGTTGACATGCCTAGCATGTTCACTCAATTTTTCTTCATTTTGGGTTATGGATAGAGATGGTGATAAGATATGC GAACATGATTTGTCCAGCAAGACAAATAAT
CDS sequence (LotjaGi2g1v0333800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCTTAGAAACTCTTCCATCTAGTGATTTTTCCAACTTCATCATCTATGACACCATCTCTGCTACTCCATTTAGCAG CTATGAGTATTCATCAGAGACTAGCTTGTTATTAGAAGAGAATAGAGTGAAACATCATGAACATGACCCTGCATTGGTGA CAAGAAAACGGCAATGTGGTGAACCAGAAGCCGTTGGCCAGAGGCGGAATTTCGCCGTGCAAGGGAGGAAGAAGAGGAGG AGAAAGACAAGGATTTGTAAGAGCAAGGAAGAGGCAGAGACTCAAAGAATGACTCACATTACTGTAGAAAGAAACCGCCG GAAACAGATGAATGAGCATCTTGCTGTTCTGAGATCACTCATGCCTGAATCCTATGTCCAAAGGGGTGACCAGGCCTCAA TAGTGGGTGGAGCAATAGAATTTGTGAAGGAACTAGAGCACCTAATGCAGTCCCTTGAGGCTAAAAAATTTCAGCTTTTA CATCAAGGAGTGGCACTAACCAGTACTGAAGAAGATAAAGCCATTTCCAACTCCATGATCATGACACCCCCTTTTGCTAA TTTTTTTGTGCATCCTCAGTACACGTGGTCCCTGGCTCACAAATACACTTCTTCTTCTGAGACTGCAGCAGCAGCCATAG CTGATATTGAGGTTACTCTGATCGAGACACATGCAAACCTTCGAATTCTCACAAGGAGAAGCCCGAGGAAGCTATCAAAG CTTGTTGCTGGTTTTCAAGCACTCTTCCTCACTATACTGCATCTCAATGTCACCACTATGGACCCCTTGGTACTCTTTTC TATCAGTACTAAGGTTGAGGAAGGATGCCAGCTTGGTTCAGTAGATGACATTGCAACTGCAGTTCACAACTTGCTTAGAA TGATTGATGATGAAGCTTCCCTTTGCTGTTAA
Protein sequence (LotjaGi2g1v0333800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MALETLPSSDFSNFIIYDTISATPFSSYEYSSETSLLLEENRVKHHEHDPALVTRKRQCGEPEAVGQRRNFAVQGRKKRR RKTRICKSKEEAETQRMTHITVERNRRKQMNEHLAVLRSLMPESYVQRGDQASIVGGAIEFVKELEHLMQSLEAKKFQLL HQGVALTSTEEDKAISNSMIMTPPFANFFVHPQYTWSLAHKYTSSSETAAAAIADIEVTLIETHANLRILTRRSPRKLSK LVAGFQALFLTILHLNVTTMDPLVLFSISTKVEEGCQLGSVDDIATAVHNLLRMIDDEASLCC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 237 | 237 | - | – | |
| PANTHER | 30 | 300 | 271 | 8.7E-120 | – | |
| PANTHER | 30 | 300 | 271 | 8.7E-120 | – | |
| Gene3D | 86 | 162 | 77 | 3.9E-12 | ||
| CDD | 93 | 148 | 56 | 1.46177E-11 | ||
| SUPERFAMILY | 93 | 166 | 74 | 2.88E-16 | ||
| ProSiteProfiles | 94 | 145 | 52 | 14.881 | ||
| Pfam | 95 | 146 | 52 | 1.5E-10 | ||
| SMART | 100 | 151 | 52 | 2.1E-8 | ||
| Coils | 142 | 162 | 21 | - | – | |
| Phobius | 238 | 257 | 20 | - | – | |
| Phobius | 258 | 303 | 46 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein dimerization activity | The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. |
Expression pattern of LotjaGi2g1v0333800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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