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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0335900 |
| Transcript ID | LotjaGi2g1v0335900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ribonuclease H; TAIR: AT4G29090.1 Ribonuclease H-like superfamily protein; Swiss-Prot: sp|P0C2F6|RNHX1_ARATH Putative ribonuclease H protein At1g65750; TrEMBL-Plants: tr|A0A061F6T6|A0A061F6T6_THECC Uncharacterized protein; Found in the gene: LotjaGi2g1v0335900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:81198787..81201085) extracted from Lotus japonicus Gifu genome v1.2.
CTGTTTTTAGAGCTCCAAGAGGGGTGATACGGGAGATGGAGCTGGTTATGAGGAGATTCTTATGGGGTGGTGTGAGTGGA GATCAAAAGATAGCGTGGGTGGCCTGGGAGGACATTTGTAAGAGTAGTAGGTATGGGGGGTTGGGTCTGGGTTTTTTGGA GATGAAAAATAAGGCTCTATTGTTAAAGTGGTTCTGGAGGTTCGGAAAGGAAAAACATGCTATATGGAGAAAAATTTTAT GTGCTAAGTATGGGCTGGAGGAGGCTTTTATTATGCCTCGGCTGGATGGTGTTAGGGTATCCACGGGGTCATGTGTTGCA GTGGATTTATTTTCATTGAGGAGAGAACAGAACGTGATGGTTAATGAATTCATTACTGGTTTGGCTTGTAGGGTGGGTGA TGGAGTGGGAGTAAGGTTTTGGAGCGATATTTGGATTGGGGAGGCATCTTTACAGGTTATGTTTCCTCGGGTTTTTGCTT TATCAATTCGAAAATCAGCTGCAGTGGCAGATTTGGGGAACAAGGTGGGAGGGAAGTGGGTATGGAAGGTGGATTTCAGG CGGAATTTTTTCGAGTGGGAGGTGGAACAGTATCACAATTTTTGTTCTAGCATTGGGTCTTTAGTGGCTAATGATGATAT GGATTGTCTGTTCTGGAAGGGAGATCAGATGGAGATTTTTTCAGTAAAAGGTTTGTGTGTTGTATGGGAGGAGAGGTGGT TTGCCCAGGCAGGATGGATAGTTCCAAAGTTGTTAAAAAAGGTGCTTCCAGCAAAGGTATCTTTATTTGTTTGGCAAATT CAGCGGAACAGTATCGCAACTAAGCAAGCTTTACTGGATCGTGGCATTCAAATTCCAGATGGGGGTGTGTGCAGCCTATG TTTTGATGGCATTGAGACTGTGTCGCATCTTTTTTCGCATTGTAATCAGGTGTGGCTATCATGGTGTTCAATTTTAGAAA GAGAAGGGGTGACGTGGGTAACACCGGGAAGTATTAGTTTGCTGTTGCTGGAGTGGAGTAATTTAAATACGAAGACAGAT AGGCTCATATGGGATTTAATTCCTTATGCACTGTGCTGGTCTTTATGGATAGAAAGGAACGAGGTGGTTTTTAACAATAA GGAATTCTGCGTTGATTTGGTTCGAGATATGCTCATTGCGCGACTAGCTTGGTGGGTGAAAGCGTGGTGGAAAAGCTGCC CTTATCGGGTTGATCAATTTGCTCAGGGGTTTGAGTTCATAAGGCTACCAAAACAAGTAGGCAGGAAAAAGTCGCAGGAA TGGATTCCACCGGAGAAATCTGTATTGAAATTTAATGTTGATGGATCCTGTTTAGGGTGTCCAGGAGAAAGTGGAATAGG GGGTGTACTGCGAAACTACAAAAAAGAGGTGGTAGGGGTTTTTGCTAAGGGGATTGGGGAGGCGTGGGCTTATGAGGCGG AAGTTCAAGCCATACATCATGCGCTGCTCTTTTGCTGTCAGTTTAAGATTTCCACAATTGTTATAGAGAGTGACTCCACT TTAGCGGTTGGATGGGTCAACAATAGAGAGCGAAGGCCATGGAAATTGTACCAGGCTTTGCATTCCATTGATCAATTAAT ATTGCAGGTGAACTGTTTGAGTGTTAGTCATATTTTGAGGGAGGGTAATGGGGTGGCAGATTTTTTGGCAAAATTGGGTA GAGATAGTGATGAAGTTCTATGGGGGGGTTGGCAGCGTTCCAATTCTTGCAGATATGGTTTAATGGGTGGGTGTTATGGA GGTATGGTATGGACTAGATATTTTCTCTGCTATCTGATATGTGTTTCTAGGCCAGACCGCTGGGGTTTATTTTTATGCAC TAGTGTTGATATGTTGGTCAAGAAGGCTTGCGGTTGTGCTGTTTTGTTTATGTGTGTTTTTAGGCTTTTTGGAGGCTGGA AGGAATAAAGTCAAGCGCTCAAGGAATGGTGATTTGAAGGATTTCATGTTGATCCCTGAAAGTTGGTTTGTTAGGGTACT GGGAGTGGCTTTTATATTAAGACTTTGATGTCCTTATGTAGCTATCTTTTGTTTGGAGGGTGTATTTCATTTGGCTCTCT ATAGTTTTAGAGTACTCTTTTTCCTCACTAGGTTTTTATCACATTTGGTTTTTTCCTTGTGAGGTTTTAATGAGGCTCTT TCTATAGATTCAAGAGCTCTTTTTGGGGTAGTTAGTTTGGAGGTTATGTTTTTCCCGGAAGGATTTTCTTTTGGGTTTGA TCCATATTAATAAAGTTTCTTTGGTTGTCAAAAAAAAAATAAAAAAAATTCAACTTGTA
CDS sequence (LotjaGi2g1v0335900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGCTGGTTATGAGGAGATTCTTATGGGGTGGTGTGAGTGGAGATCAAAAGATAGCGTGGGTGGCCTGGGAGGACAT TTGTAAGAGTAGTAGGTATGGGGGGTTGGGTCTGGGTTTTTTGGAGATGAAAAATAAGGCTCTATTGTTAAAGTGGTTCT GGAGGTTCGGAAAGGAAAAACATGCTATATGGAGAAAAATTTTATGTGCTAAGTATGGGCTGGAGGAGGCTTTTATTATG CCTCGGCTGGATGGTGTTAGGGTATCCACGGGGTCATGTGTTGCAGTGGATTTATTTTCATTGAGGAGAGAACAGAACGT GATGGTTAATGAATTCATTACTGGTTTGGCTTGTAGGGTGGGTGATGGAGTGGGAGTAAGGTTTTGGAGCGATATTTGGA TTGGGGAGGCATCTTTACAGGTTATGTTTCCTCGGGTTTTTGCTTTATCAATTCGAAAATCAGCTGCAGTGGCAGATTTG GGGAACAAGGTGGGAGGGAAGTGGGTATGGAAGGTGGATTTCAGGCGGAATTTTTTCGAGTGGGAGGTGGAACAGTATCA CAATTTTTGTTCTAGCATTGGGTCTTTAGTGGCTAATGATGATATGGATTGTCTGTTCTGGAAGGGAGATCAGATGGAGA TTTTTTCAGTAAAAGGTTTGTGTGTTGTATGGGAGGAGAGGTGGTTTGCCCAGGCAGGATGGATAGTTCCAAAGTTGTTA AAAAAGGTGCTTCCAGCAAAGGTATCTTTATTTGTTTGGCAAATTCAGCGGAACAGTATCGCAACTAAGCAAGCTTTACT GGATCGTGGCATTCAAATTCCAGATGGGGGTGTGTGCAGCCTATGTTTTGATGGCATTGAGACTGTGTCGCATCTTTTTT CGCATTGTAATCAGGTGTGGCTATCATGGTGTTCAATTTTAGAAAGAGAAGGGGTGACGTGGGTAACACCGGGAAGTATT AGTTTGCTGTTGCTGGAGTGGAGTAATTTAAATACGAAGACAGATAGGCTCATATGGGATTTAATTCCTTATGCACTGTG CTGGTCTTTATGGATAGAAAGGAACGAGGTGGTTTTTAACAATAAGGAATTCTGCGTTGATTTGGTTCGAGATATGCTCA TTGCGCGACTAGCTTGGTGGGTGAAAGCGTGGTGGAAAAGCTGCCCTTATCGGGTTGATCAATTTGCTCAGGGGTTTGAG TTCATAAGGCTACCAAAACAAGTAGGCAGGAAAAAGTCGCAGGAATGGATTCCACCGGAGAAATCTGTATTGAAATTTAA TGTTGATGGATCCTGTTTAGGGTGTCCAGGAGAAAGTGGAATAGGGGGTGTACTGCGAAACTACAAAAAAGAGGTGGTAG GGGTTTTTGCTAAGGGGATTGGGGAGGCGTGGGCTTATGAGGCGGAAGTTCAAGCCATACATCATGCGCTGCTCTTTTGC TGTCAGTTTAAGATTTCCACAATTGTTATAGAGAGTGACTCCACTTTAGCGGTTGGATGGGTCAACAATAGAGAGCGAAG GCCATGGAAATTGTACCAGGCTTTGCATTCCATTGATCAATTAATATTGCAGGTGAACTGTTTGAGTGTTAGTCATATTT TGAGGGAGGGTAATGGGGTGGCAGATTTTTTGGCAAAATTGGGTAGAGATAGTGATGAAGTTCTATGGGGGGGTTGGCAG CGTTCCAATTCTTGCAGATATGGTTTAATGGGTGGGTGTTATGGAGGTATGGTATGGACTAGATATTTTCTCTGCTATCT GATATGTGTTTCTAGGCCAGACCGCTGGGGTTTATTTTTATGCACTAGTGTTGATATGTTGGTCAAGAAGGCTTGCGGTT GTGCTGTTTTGTTTATGTGTGTTTTTAGGCTTTTTGGAGGCTGGAAGGAATAA
Protein sequence (LotjaGi2g1v0335900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MELVMRRFLWGGVSGDQKIAWVAWEDICKSSRYGGLGLGFLEMKNKALLLKWFWRFGKEKHAIWRKILCAKYGLEEAFIM PRLDGVRVSTGSCVAVDLFSLRREQNVMVNEFITGLACRVGDGVGVRFWSDIWIGEASLQVMFPRVFALSIRKSAAVADL GNKVGGKWVWKVDFRRNFFEWEVEQYHNFCSSIGSLVANDDMDCLFWKGDQMEIFSVKGLCVVWEERWFAQAGWIVPKLL KKVLPAKVSLFVWQIQRNSIATKQALLDRGIQIPDGGVCSLCFDGIETVSHLFSHCNQVWLSWCSILEREGVTWVTPGSI SLLLLEWSNLNTKTDRLIWDLIPYALCWSLWIERNEVVFNNKEFCVDLVRDMLIARLAWWVKAWWKSCPYRVDQFAQGFE FIRLPKQVGRKKSQEWIPPEKSVLKFNVDGSCLGCPGESGIGGVLRNYKKEVVGVFAKGIGEAWAYEAEVQAIHHALLFC CQFKISTIVIESDSTLAVGWVNNRERRPWKLYQALHSIDQLILQVNCLSVSHILREGNGVADFLAKLGRDSDEVLWGGWQ RSNSCRYGLMGGCYGGMVWTRYFLCYLICVSRPDRWGLFLCTSVDMLVKKACGCAVLFMCVFRLFGGWKE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 566 | 566 | - | – | |
| PANTHER | 2 | 556 | 555 | 3.4E-51 | – | |
| Pfam | 238 | 300 | 63 | 2.2E-10 | ||
| ProSiteProfiles | 420 | 550 | 131 | 12.638 | ||
| Gene3D | 423 | 551 | 129 | 6.6E-24 | ||
| SUPERFAMILY | 424 | 550 | 127 | 1.25E-20 | ||
| CDD | 427 | 546 | 120 | 4.98933E-29 | – | |
| Pfam | 427 | 547 | 121 | 2.4E-19 | ||
| Phobius | 567 | 590 | 24 | - | – | |
| Phobius | 591 | 610 | 20 | - | – | |
| Phobius | 611 | 628 | 18 | - | – | |
| Phobius | 629 | 630 | 2 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | RNA-DNA hybrid ribonuclease activity | Catalysis of the endonucleolytic cleavage of RNA in RNA-DNA hybrids to 5'-phosphomonoesters. |
Expression pattern of LotjaGi2g1v0335900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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