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LotjaGi2g1v0336100.1

Overview

Field Value
Gene ID LotjaGi2g1v0336100
Transcript ID LotjaGi2g1v0336100.1
Lotus japonicus genome version Gifu v1.2
Description Myb family transcription factor family protein; TAIR: AT1G32240.1 Homeodomain-like superfamily protein; Swiss-Prot: sp|Q9C616|KAN2_ARATH Probable transcription factor KAN2; TrEMBL-Plants: tr|V7CLW8|V7CLW8_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0336100
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr2:81283239..81289336) extracted from Lotus japonicus Gifu genome v1.2.

CACCACCCCTATAGTATAGTCCCTCAAGTGTCATTTTCTCACATATACTTCACACAAAAGAAACAAGCCATTCACTTCAC ATACCTTGTCATTTCTTCTTTCCTTCTTTCTCTCTCTTTGCCGTCTCCTCCACATCTCAAATCTCTGCTCTCTCTGCAAC TACTCCATCAAATTGATTGAATGCTCAAAACTCCACCATTACTCATCTTCAAAAAATCCAATTAATTACCCTTATCTTGC AATCAGCTCTATTTCACTTCCATCCTCCTTGAAAACTCCCATACTATAAAACCATCACTCTATTACACAACAAAGGGAAA CTGAGCAGGGGGGAAACTGCAAAAGCAAGAGAAGAGAACCCAAATTGAAGCAGAACAACACAAGGTTATTGATTTATTCT TGTGTTGTACCCAAAGATGGAGCTATTCCCAGCACAACCAGACTTGTCTTTGCAAATTAGTCCTCCAAATTCCAAACCCA CCACATCAAGTTGGAAAAGAAGCACAGAGGAAGACATGGATTTGGGGTTCTGGAAGAGAGCTTTGGAATCCAGAAGCTCC ATGTCAACTTCATCAATGGCGAAAAAAGATACCGGCTTCTTCGACCTTTCCCTCTCCAATCCAAGGCCTTCAGAATCAAA CACCACCATTCATCATGCTAATAACGCCATTGCCAACAACAGCAACAACAACCACTTCCAATCTTTTCAGCAAAACCATT ACTTTCAACCACTCTTCCACCAACAACCACTTCAGCACCAAAGCTTGAGCCAAGAACTCGGTTTTCTCAGACCCATCAGG GGAATCCCGGTGTACCAAAACCCCCCTCCGATGATGCCATTCACCACTCAACCACATCATCTTCTAGAACCTTCTTCCAC ACCTTCTTCTCTAATTTCCAACACCAACACCGGTTCTCCAACCCCTAATTTTCCATCTCAGGCTCTGATGCGGTCCAGGT TCTTGTCTCGCTTCCCCGCGAAACGAAGCATGAGAGCTCCGAGGATGCGGTGGACTACCACGCTCCACGCTCGCTTCGTC CACGCTGTTGAGCTCTTAGGCGGGCATGAAAGTATGCATCATCAGTCATCACCATTTTTTTCTTGCTTAATTTCCCCTTC TTCTTACACTCATGGAAAATTCAAGTAACAAATCGAAGAATCGAAGCGATAAGAGCCGAACCACAACAGAAAATTTGCCT TTCTTAATTTAACAATGTTAATTTGGATTTTTTAACTAATTTTTGTTTGTACTGGTGTTTGTTTTCATTAGGGGCTACCC CAAAATCAGTGCTTGAGCTAATGGATGTGAAGGATCTCACTTTAGCCCATGTCAAGTCTCACTTACAGGTAACTCTTTGA TTAATTGCACCTTTTTATAGCTAATCTTACCCCCAAATCAGTGCTTAATTTGCATTACATTACATTAGAGGAAGCAGTTA AGTGATGAATATATAAATGTTTCAAATTCCAATGGTTTTCTTAGAAAGAGTCTCATAAATCCTTAGCGCTTCTTTTTCAA TTAGATCTGTTCCCTCTCTCTGCTTCTCCTTCTGCTTTTGCAACCTAATAAACAGCTTTTTGCATGGAAGAATGAACCAC CCAAATTGAACAAAAAAAATAAAAAATTCAAGAGAGAGAGTGTTATCGATTTCTGAAAATCAAGTAGGACAAGCTCGTAG TTCACTCCATGCCATTAAAAAATGAATAAAATGTGTGTATATATAAGAAAATTGTGCAATCTGTACGTACCAAACAAACA CCATCATTTCTCAATGATGCGTTGGTTTTGTTTACCACATGCCAGCTTTAACCATGGTTAGTCACATGCTCCCATGCATA TGCATATTATACCGGAACCATAAATGCTTCTGTCTTAGATCTTGTACTACTCTACTGCACATCAATTTAATACTCCTTGC AATTTAATTTCTTATTCCTACCATAAACTTCTTCGATTAATTTCTACTAATTAATTAACCTGCTTTTTTGTTTTTTAATT TCCTTATTTATATCTGAGGTTAATAATATCTTGCATTAAACTTAATCTAGATGTATCGGACGGTGAAGACTACAGATAGA GCAGCAGCTTCTTCAGGTTAGAAGAATCCACTTAATTTCATTTTGTCTAATTGATAGTTAATTGATCAATTCTACCTTGC TCTTTCTCTTTTCTTTAACCTTTTTCTTTTTCTATTCCCTTGTGAACATGAATTAGGGCAATCAGATGTGTACGACAATG GATCATCTGGAGATAATTCTGATGACTTAATGTTTGACATCAATTCTTCAAGAAGGCCTGAACTATCTATTAAGCAGGGA AGATCAAATGTTGTTAATCAAGAGAAGGAATGTCATGGGCTTTGGAGCAATTCTTCAAGGTAATGCTTCTAATCATGTGT TATCCATCTTTGACTTATCACACATTTTTTCTTTAGCTAATTTTATGCTTCACCATTTGGATGAAGAAACTTCTATCTAT CTTCTTTCTTGTCCTACCAATTAAATTGTGTCATCTGGTTGTAAATATGTCAAGATAATGTTATATGAGTGAATTTTAAA TGATATGACACAATTTAATTGATAGGAGATTGAATGAGCCACTCTACGGAATTTCAAGTTTTCACACATGGATCAACCTA GCATAGTCTTGTTATTGAGGTCTCCAAAACAAAACTATAGTGGAACATTTTGTACTGAATGATGTTGGGAACATTTTTTT TCCAAGCAAGTGGTAATTTTTCTATGCAACATTTTTCATGATTCAAATTTTTAAAACTTTACGTGAACCGTTCATGTTGC AAAAAATACTTATTAATATATATATAAAAAAGGAGCAGTTCGTGCATGCCTTATTCATAGGAGCATTTCTCTCCTTTTGT TCCTTGCTTTCTCCTTTCTCTTTCTTAACCTCACATGCAAACATGGTTAGGCGCAAAAAATCACAAAAAGAATAAATCAT TTTCAGTTTGCTTTGTTCTGTCTGTCCTCAAACCATGAGCATCCAAAACTCCATGATGGGGTAATAATATACTCTCTTCT AGTGGGTGAAAAGGAAGTAAAAAAGGAACCCACACACACACCATTCAAAGACAATGGAATTTCATATTTGCTAAAATCCA CCTTAAAATTAGAGATATCTCTTTCCTTAGGATTTTGTGGGGTTCAGACATTAGGCTATTACATGGGGCCCTACACAATT GGGAAACTTAGTCTCAAAGCTAAGCCCTTGTAGAACCATAATTAGAAATCTTGGTGCCAAAGCGATATTCCCTTTGAAAC ATCCTTCAATGGTCCTATATATTTATACACATATATATATATATATATATATATATATATATATTATAGTCATGGGCAAC ATGATACATCAATTAGGAATTTGGGATGACTTCAACTTTATTTCAAAATCAAAAGAATAACTGAAAGGGCATATAAATAA CACTGTAAAAGATGGCTTTCTTTCCTCAGTTTTCTTTTCTTCTGCATGGCATCCATTAATGGGAAATATTCTCTTCATGT GTTTGGTTATAACAGGGAAGCTTGGTTGCATGGCAAGCCAAAGAATGATTCTGTTGGAAACACACCTTCTCTTGAGGTAT GTTAGCCTGTTTGGATAACATATTTTTCTTCAGAATCCATTCTGGAATCGAGAAATTTCTTTTCATAATTGATTTTGACT TTAGGTGAAACTTTTACAAACATGCCATGAATTGTAAATGTTACTCAACAAGCAAAGCACAACTTTAGTTGCTAAGGTTG GCTTTTTTGTTTCAAAAGCTATGCATTCACAAATACCAATTAGGCTGCGTTTGGAATTTGCATGAAAGGGAGTTGAGCTG AAAAGGAAATACGTTTGATCTTTTTCATCTTGCCATGCACATTATAGCTATGAGAAAAGAAATAGTCTTTCCATAAAGCT GCTTTGTCCTTCACAAATTCAAATGGGGTAGACCAGTCCTTTTCACATTTACAAATTACAAAGGTTAAAAGCGATTTGTG CTGTAAAGACTAAAAACTCCCCTCTAGTTAGGATTTATTAATGACCATATTGAAAACGACCATAGAACCCTAAACCTACT CCATTTGACTCAATTGTCAAAGGTCTAGACTTTGAAAATGAAATTATAGCTAGGTCAATTAATAACAAATATATAATCAA ACACACACACAACACACCTACATGAATTGTAATTGTAATGCTATACTATAAGATAATTGGATCTTGGAAGCTAGCTAGCA CTTGAACATGCAAGTTTTCCTAGCACTTAGCTAGCAGGCTTTTAGGTGTGTCCCATATCTGAAGTTTCTTCTTTTTTTCT CAATCGGTAAAATTAAAATTATTCTCTGAGTCCAATGTCCTTTTTGATTCCCAAAATCTGTTCTCAGTTCTCACATACAC TTCTCTTGTTCTACACTACTCTCTGACTAACTAGCACATTTTCCTCTTTTATACCTTTAATCATATTCTTATCATTACAC ATTTCTGAACTTTTTTTGTTGTTATTTTTTCAGAAGGAAATGGATCCAAAGTGCCTAAGCTATGAGAGAATATCAGATGG AAGCTCATCCTCAAACCTTTCAGGATCAAGCCCGAAGAAACTTAATTTGGATTTGGGATTCACTTTGGGCCAACCTCTTT GAGAAATCTTCCTCCTGGATATATATTATTAATTTTACAATTATATGTCTCTGAAATTGAAGGAGAAGGTAGAGTGCTGA AATGAGAATCAGGAACCCTCTGAGAGAATCAGAGAAAGAGAAAGGTAAAAGAAAACAAAAGAGAAAAAAGAGAAAAGTAA AGGGTGCTAAAGAAACACAAGGAGACAAGAAAGACAGAAAGCAACAAAAGGAGAGGGTGGGGGAAAAAAGCATAGCCTTC CTATCAGAGCTCTTGTGAGATCCAAATCAACATATTTTATTTTCTGGGTAAATATATGAAATCTAATTGATTTGTATGTT TTGCAACCTGTGAGAGAAAGAGACATGAGAGAAAGAGAGGGGGAGGGTGAGCTTTAGCTATGTTAAAGTAAGAAGTGATC CTTGGTAATTGTAATGGAGCACTTTACGTTTATGATGAAATATTTAGATATTTCCACCAAAGAAGCTGGGTTCCTCCTTC CTATATTTTTAGGCTGCGTTAAACTGACCCACGGTGCTTCAGTTACTATTTCAAACTTAAATTACTGAATTGTCCATTTT ATCTTTTCATTTTCCATCCTTCTTCTTTTCTCTCAGTGTCCCTCTCATCTGTCTCCGGTGAGCCACGTCGATGTCTCAAC CACCACTCCAACAGCTCCGCCCATCCACCATTCCACAGCATCACCAGCCCACAACCACAATCAAATAAAAGTGGAAAAGA TGAAAGGAGGAAATCAGTCTAAAAATGGTGGAGAAGAACAGAAGATGAACACATAGGGGACCACGACCAAGGCGACGACG GCGAGACTCTGGCCCGGCTGCGCGAGGTTTTAAGCAGAGGAAGCAGAGGCCCAAAGGGACTGGAACACGATGAGTTTTGC TATGATGGTGATGCGAGTGAAGGCTGGAGCATGTGCGACCCCGGTGCAGCGAAACGGAACGTCTGGACCTTGCACTCACG GCGGCAAGGGTCGATGGTCACGGTTCTGCCTCTGACAACGGCGATGGCCAGTGGGTCTTGATGGCTGGAGAGATTTGGTG CAGATCTGGAAGTTTTTGAGGGCGGATCTGCATGTTTTGGTGGTGGATCTGGAGGGCTCTGTTGCTGTAGTTTGGTGGGG CTTAAATCAGAGGTTGAAGGAGGCTGAGGAGGGAAGCGGGCACGGTGTTGGGCCAGGGGAGCAGTGGAGGGGAAAGGGGA GGGAGAGAAAGAGGATCTAAGGAGGAGGAGGAGGTGGTGGTGGAGTAGCAGTAGGCGGAGGCCCATTCGTCGGCGGTGGC TATGGTTGCCTAGCAGAGCAGTTAGGACTTAGGATAGGAGGGATGGAGAGGATGATTAATCAGGGGTGCTTTCGTCATTA CATCTTTTTCATGTTTTAAATCTGGATCACTCAATATTTTAATATTATATTCAAAGGTGAAAATTAAACTGAAGCACCCA CGGTAGACGAAACCATAT
Download Genomic Sequence

CDS sequence (LotjaGi2g1v0336100.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGAGCTATTCCCAGCACAACCAGACTTGTCTTTGCAAATTAGTCCTCCAAATTCCAAACCCACCACATCAAGTTGGAA AAGAAGCACAGAGGAAGACATGGATTTGGGGTTCTGGAAGAGAGCTTTGGAATCCAGAAGCTCCATGTCAACTTCATCAA TGGCGAAAAAAGATACCGGCTTCTTCGACCTTTCCCTCTCCAATCCAAGGCCTTCAGAATCAAACACCACCATTCATCAT GCTAATAACGCCATTGCCAACAACAGCAACAACAACCACTTCCAATCTTTTCAGCAAAACCATTACTTTCAACCACTCTT CCACCAACAACCACTTCAGCACCAAAGCTTGAGCCAAGAACTCGGTTTTCTCAGACCCATCAGGGGAATCCCGGTGTACC AAAACCCCCCTCCGATGATGCCATTCACCACTCAACCACATCATCTTCTAGAACCTTCTTCCACACCTTCTTCTCTAATT TCCAACACCAACACCGGTTCTCCAACCCCTAATTTTCCATCTCAGGCTCTGATGCGGTCCAGGTTCTTGTCTCGCTTCCC CGCGAAACGAAGCATGAGAGCTCCGAGGATGCGGTGGACTACCACGCTCCACGCTCGCTTCGTCCACGCTGTTGAGCTCT TAGGCGGGCATGAAAGGGCTACCCCAAAATCAGTGCTTGAGCTAATGGATGTGAAGGATCTCACTTTAGCCCATGTCAAG TCTCACTTACAGATGTATCGGACGGTGAAGACTACAGATAGAGCAGCAGCTTCTTCAGGGCAATCAGATGTGTACGACAA TGGATCATCTGGAGATAATTCTGATGACTTAATGTTTGACATCAATTCTTCAAGAAGGCCTGAACTATCTATTAAGCAGG GAAGATCAAATGTTGTTAATCAAGAGAAGGAATGTCATGGGCTTTGGAGCAATTCTTCAAGGGAAGCTTGGTTGCATGGC AAGCCAAAGAATGATTCTGTTGGAAACACACCTTCTCTTGAGAAGGAAATGGATCCAAAGTGCCTAAGCTATGAGAGAAT ATCAGATGGAAGCTCATCCTCAAACCTTTCAGGATCAAGCCCGAAGAAACTTAATTTGGATTTGGGATTCACTTTGGGCC AACCTCTTTGA
Download CDS Sequence

Protein sequence (LotjaGi2g1v0336100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MELFPAQPDLSLQISPPNSKPTTSSWKRSTEEDMDLGFWKRALESRSSMSTSSMAKKDTGFFDLSLSNPRPSESNTTIHH ANNAIANNSNNNHFQSFQQNHYFQPLFHQQPLQHQSLSQELGFLRPIRGIPVYQNPPPMMPFTTQPHHLLEPSSTPSSLI SNTNTGSPTPNFPSQALMRSRFLSRFPAKRSMRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVK SHLQMYRTVKTTDRAAASSGQSDVYDNGSSGDNSDDLMFDINSSRRPELSIKQGRSNVVNQEKECHGLWSNSSREAWLHG KPKNDSVGNTPSLEKEMDPKCLSYERISDGSSSSNLSGSSPKKLNLDLGFTLGQPL
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR31496:SF21
1 143 143 6.9E-124 –
MobiDBLite
mobidb-lite
1 30 30 - –
PANTHER
PTHR31496
1 143 143 6.9E-124 –
MobiDBLite
mobidb-lite
11 25 15 - –
MobiDBLite
mobidb-lite
150 174 25 - –
PANTHER
PTHR31496:SF21
164 375 212 6.9E-124 –
PANTHER
PTHR31496
164 375 212 6.9E-124 –
Gene3D
G3DSA:1.10.10.60
191 252 62 1.5E-24 –
SUPERFAMILY
SSF46689
192 248 57 1.97E-15
IPR009057
TIGRFAM
TIGR01557
195 248 54 2.4E-23
IPR006447
Pfam
PF00249
196 247 52 1.3E-5
IPR001005
MobiDBLite
mobidb-lite
253 280 28 - –
MobiDBLite
mobidb-lite
316 364 49 - –
MobiDBLite
mobidb-lite
346 364 19 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi2g1v0336100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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