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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0336600 |
| Transcript ID | LotjaGi2g1v0336600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Eukaryotic translation initiation factor 3 subunit G; TAIR: AT3G11400.1 eukaryotic translation initiation factor 3G1; Swiss-Prot: sp|A7SKE9|EIF3G_NEMVE Eukaryotic translation initiation factor 3 subunit G; TrEMBL-Plants: tr|A0A1J7G0E8|A0A1J7G0E8_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0336600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:81385496..81386743) extracted from Lotus japonicus Gifu genome v1.2.
TATAAATAAAGGAGAGTTCATAAAGTGTTTCAGTCCAATATCAAGAACAAGAGGCCCACTTTGACAAAAAAAATAAAACA TGTTGCAGCAACAGGCTCAGGGGAAACTCCGGTGGGGTGAATTGGACGACGACGACGGCGGCGAGGATCTCGACTTCCTG TTACCGCCGCTTCAGGTCACACTTCCCGACGAGAACGGCATCAAGAAGGCTATTGAGTACAAGTTCAACGACGACGGCAA CAAGGTCAAAATCACAACCACCACCCGCACACGCAAGCTCGCCGATGCTCATCTCAGCAAACGCGCCGTCGAGCGCCGGT CATGGCTCAAATTCGGCGACGCCGTTCAGGAAGATGTCGGCGCCCGCCTCACCATGGTCTCCACTGAAGAGATCCTCCTC GAACGCCCTAAGCCTCTTGGTGCTAAGACGGAGGAGCCAACGGCTGCTTCAAAAGGCGGCGCTGTTCTCATGGTCTGCAG GACGTGTCGGAAGGAAGGTGAGCATTGGACTGCCCGGTGTCCCCTCAAGGACCTTGCTGCGCAATCTGATGACACTGCCG ATAAGCTTCCGGCGGCGTCGGCGTCGGCCGGAGGAGCAGCGTCGACGTACGTGCCTCCTGGGATGAGACCGGGTGCGGAG AGGAGCACTGGCTCCGACATGCGGCGCAGGAACGATGAGAATTCCGTGAGAGTGACCAACCTCTCGGAGGAGACGAGGGA GTTTGATTTGATGGAGCTTTTCCGTCCCTTTGGTGCTGTGAGTAGAGTCTATGTTGCCATTGATCAGAAGACAGGTGAGA GCAGGGGTTTTGGGTTTGTGAATTTTGTTAGCAGGGAAGATGCACAGAGAGCAATCAACAAACTCAATGGATATGGCTAT GATAATCTAATCCTTAGAGTTGAATGGGCAACCCCTAGGGCTACCTAAGTAAATAGATACTAGTGTTTGCGCGATTTAGA GCCCGATTTTGAAGGCCTATTTAGTTTCCTGTAATCTGAGCCCTTGCAATCTGTTTGCTATGAGGTGCAACTTCACTAGT AAGATACATGGTTTTGAAATTTCTATTTACATTTGCTATTGTTCGCGATGATGGTTGTTGAATAGGTCAATGTTATATTG CACATTTGCATCCTTATTTTTGCTCATGGTGCTATTGTGATGGATACTTTAGTTTTTTTCTCTTATTTTGAGGATATGGC AAATGGTATTTGTTTGAGTTTCATTTCATCAGTGTTCCAGGCTGCCAG
CDS sequence (LotjaGi2g1v0336600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTGCAGCAACAGGCTCAGGGGAAACTCCGGTGGGGTGAATTGGACGACGACGACGGCGGCGAGGATCTCGACTTCCT GTTACCGCCGCTTCAGGTCACACTTCCCGACGAGAACGGCATCAAGAAGGCTATTGAGTACAAGTTCAACGACGACGGCA ACAAGGTCAAAATCACAACCACCACCCGCACACGCAAGCTCGCCGATGCTCATCTCAGCAAACGCGCCGTCGAGCGCCGG TCATGGCTCAAATTCGGCGACGCCGTTCAGGAAGATGTCGGCGCCCGCCTCACCATGGTCTCCACTGAAGAGATCCTCCT CGAACGCCCTAAGCCTCTTGGTGCTAAGACGGAGGAGCCAACGGCTGCTTCAAAAGGCGGCGCTGTTCTCATGGTCTGCA GGACGTGTCGGAAGGAAGGTGAGCATTGGACTGCCCGGTGTCCCCTCAAGGACCTTGCTGCGCAATCTGATGACACTGCC GATAAGCTTCCGGCGGCGTCGGCGTCGGCCGGAGGAGCAGCGTCGACGTACGTGCCTCCTGGGATGAGACCGGGTGCGGA GAGGAGCACTGGCTCCGACATGCGGCGCAGGAACGATGAGAATTCCGTGAGAGTGACCAACCTCTCGGAGGAGACGAGGG AGTTTGATTTGATGGAGCTTTTCCGTCCCTTTGGTGCTGTGAGTAGAGTCTATGTTGCCATTGATCAGAAGACAGGTGAG AGCAGGGGTTTTGGGTTTGTGAATTTTGTTAGCAGGGAAGATGCACAGAGAGCAATCAACAAACTCAATGGATATGGCTA TGATAATCTAATCCTTAGAGTTGAATGGGCAACCCCTAGGGCTACCTAA
Protein sequence (LotjaGi2g1v0336600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLQQQAQGKLRWGELDDDDGGEDLDFLLPPLQVTLPDENGIKKAIEYKFNDDGNKVKITTTTRTRKLADAHLSKRAVERR SWLKFGDAVQEDVGARLTMVSTEEILLERPKPLGAKTEEPTAASKGGAVLMVCRTCRKEGEHWTARCPLKDLAAQSDDTA DKLPAASASAGGAASTYVPPGMRPGAERSTGSDMRRRNDENSVRVTNLSEETREFDLMELFRPFGAVSRVYVAIDQKTGE SRGFGFVNFVSREDAQRAINKLNGYGYDNLILRVEWATPRAT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PIRSF | 1 | 282 | 282 | 1.6E-84 | ||
| PANTHER | 4 | 282 | 279 | 4.4E-146 | – | |
| PANTHER | 4 | 282 | 279 | 4.4E-146 | – | |
| Hamap | 9 | 281 | 273 | 27.26 | ||
| Pfam | 33 | 152 | 120 | 3.1E-31 | ||
| Gene3D | 153 | 282 | 130 | 8.7E-27 | ||
| MobiDBLite | 163 | 205 | 43 | - | – | |
| SUPERFAMILY | 184 | 280 | 97 | 9.27E-28 | ||
| MobiDBLite | 189 | 205 | 17 | - | – | |
| ProSiteProfiles | 201 | 279 | 79 | 18.751 | ||
| CDD | 202 | 277 | 76 | 7.01309E-45 | ||
| SMART | 202 | 275 | 74 | 2.1E-23 | ||
| Pfam | 203 | 269 | 67 | 2.7E-19 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | Translation initiation factor activity | Functions in the initiation of ribosome-mediated translation of mRNA into a polypeptide. | ||
| Cellular component | Cytoplasm | All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. | ||
| Cellular component | Eukaryotic translation initiation factor 3 complex | A complex of several polypeptides that plays at least two important roles in protein synthesis: First, eIF3 binds to the 40S ribosome and facilitates loading of the Met-tRNA/eIF2.GTP ternary complex to form the 43S preinitiation complex. Subsequently, eIF3 apparently assists eIF4 in recruiting mRNAs to the 43S complex. The eIF3 complex contains five conserved core subunits, and may contain several additional proteins; the non-core subunits are thought to mediate association of the complex with specific sets of mRNAs. |
Expression pattern of LotjaGi2g1v0336600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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