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LotjaGi2g1v0339600.1

Overview

Field Value
Gene ID LotjaGi2g1v0339600
Transcript ID LotjaGi2g1v0339600.1
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description 26S proteasome subunit, putative; TAIR: AT5G45620.1 Proteasome component (PCI) domain protein; Swiss-Prot: sp|Q8RWF0|PS13A_ARATH 26S proteasome non-ATPase regulatory subunit 13 homolog A; TrEMBL-Plants: tr|A0A1J7HWA1|A0A1J7HWA1_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0339600
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr2:81654445..81659276) extracted from Lotus japonicus Gifu genome v1.2.

ATCACACTTCAATTTCTTTCGGAAGAAGCAAAAACAAGAAAAGCAAAAAATAAAAAAAATGAAAAAAAGTTGTGAGTATA AATAGAAAACAAACCCCCAAAACTCAGAGATTTTCCAATTTCTTCTTCTTCTCCTCCGTGGTTGAATCGCCATGGCTGCT CTGCAATACTTGGATTCGCTTCGCAGCGCGCACCCGGAGCTTGACGATTGGTACAATTCTCTTGCGGATCTGTACCAGAA GAAGCTCTGGCATCAGCTCACTCTCAAGCTCGAGCAGTTTCTCGCTCATGCTGTTTTCCAGGTCTCACTCCTCATCAACA CTCCTTTCCTCTTGCTCTTTAGGGTTCCAATTTGCTCTGTAGCTTCGATTCCTTGTTTGCGAGATTTAGGGTTTTAGTTT TGATGCTGTGAACTCAATTTCGGAGTGTTAGGGTTTTTTTCTTGTTGTGATTGGAACTGGGAGAAATAAAATGGGGGTTT TCTTTGAATGGGTTGGGGGTTTTGGTTTGGGATCTGAGAATTTTAGGTGGGGATTTGATAAATTGAAATATTCGAGTTTT TGGTGATGTAGAATTAGGGTTTTGTTAAAAATTGGGTTTCTGGGCTTTCTAATTTGAAAGTCAATTCTTTTTGCTGTGAG GGTGTTGATGGGTCAGTGAGGGTTGTTTATTTTGCTTCCTTGTTTGTCAAAGTGAATTTGTTTTTTTTTGGGGCTTAGTT TTAGTTCTACTGAATGGAATTGTTTGCCGGAATTGTAGTGTTTGATTATGCTGAAAGCTGCACTTATATGGTAACCCGAT TGGAATATGTGATTGATAAGTCACATACCATTTATGATTAGAGTGAATATAGCATAGGTAGTGTGGAAGAAAACAATGTA GATGTTTCATTTTAACAAGATCAAGGTAGTCTTGTCAAATTTTGATGAATGGCTCAAGTAATTAAGTGTGTCATAAATAT GTTTTGATAATGGAGTTTTGTGAGGTTTAGATGTGGGATTCCCCCCATTTTCTATGTGGATCTTTGCCTTGAATGTTATT CCTTAGCCTGTCAATTTTTTTAACACATTGCTGGAAGCAGCTAGATCGATCTGATTAAGATCACTCGTATTTTCATTCAA TAAAACATTGTTAAATGTCTCAAATCAATTGCAAATTTCAAACGGAGGTCTTTGTTAACTTTGGGAATCACCGTTCAATC TTATTTTAGAATACATTTGAAATTAGATTCCATAAGAGATGTTACATGAAATATTCTTTCCATGTTCTCAATGGACTCTA GTAGCAAGACACGTAGCATGTCAGAACTTGTGCCAAACTTAAAGTACTATCTTATTATTATTTTTTTCTATGTTATGATT GAATTACTAATGTTGCTAACTTAACTGTTATGTACCATGATGTCACCAATGATGTTGCACAAATTGTGCTTATAATTTCT TTATGCTTCTAATATCAACTTCCATTACAAATTTATGCTCTGTGGTGAATGTTCTTTTCGTGCTCCATTACTTATTTGTT TGACCATTATTCTTGCTGTAAATTTTCAGGCTGGCGATGCTTTGATTCAGCTGTACCACAATTTCATCACAGACTTTGAG ACTAAAATCAACCTTCTCAAGCTTGCACATTTTGCTGTGATGGTTTCTCGGCAGTATTCTGAGAAAGAAGCTGCCGTTGG TTATCTTGATGGGATCATTGAGAAACTGCAAGCCACTAAAGAACAGCGCATAGAAGAACCTATTCTATACATTAAGATGC AAATAGCCATATTTAAGCTTGAGCAAGGTGATCAAAAGGAATGCAAGAAGCTTCTGGAAGATGGAAAGAGTACACTAGAC AGCATGACAGATATCGATCCAACTGTGTATGCTAGCTATTACTGGGTATCTTCTCAGTTTCATAAATCCCGCCAGGAATT TGCTGAGTTCTACAAAAGTGCTCTTCTCTATTTGGCATACACAGCAGTGGAATCTCTCTCCGATTCATTCAAGCTGGTAT GTTATCTCTCATCGGATTTCAAATGTTTGTTCATTGATTTCTTTTTGTTGCCTCAAATTATTTCTATTTGCTTCCACTCC ACTCTTGTTACAGTTACTCAACTTATTCTATGATTTTTAAGTATGGTTGTGTTGTGAAGGGAGATGATCTGATCTTCAGT CCCATGGCAGTTGAACTCCCATTTTTATGAGCCTCTAACTTTTGTTATCCTGGATTTTAGAACTGGGTGGGTTCTTTTAT TGAGGAAATTAAGGGGATGTTGTAGTTAAATTATATAGTAGTATTGAGTTGGAAAATTTGTCATAATGTTGATCAAGACT AAGTAATGTTTCTAACTTAGCTTCTTCATATATCATATCATCTAATACAAAGACTAAATTATTTCTTTTATCATTGTTAT ACTATCATTACACTACGAAGATATTTATCTTAAACTAAAACAGAAGAGTTTGAAAATAGGTTGATAATTTTACTTTTGGT AGAATAGTGTTAAGATTCTAGAAGCTAAAGAGTTTAGAGAGAAAAAGGGAAAACATAATGCATTGATTACTGAAGAGTCT AGGTACAAGAATATATATATAGAGGCTCGATATCCAGTTGAGCTCTTAAAAATCCAAACAGTATAACTAACTAGTTACAG CTATGATTAGCCAACTAGCAGAAACCTATGGGTGCATTCAGGAGCACACGAGTGTAGCATTATTCAGCACTTAATAAATG GAAACTAAATCCGGGTTTTATGATTTCATTTAGTTGCACTTCTTTCCTCTTTAAGGAGAGGTTAAAGGAAAGATCATAGT AGTTTATCCCATCTGTGGGTTTTTTTCTATTTATCTTTAGACCTGATATTAGTTAATGCTCCTATTTTTCTTGATTTGTT AGGATTTGGCTTTTGATTTGTCCCTTTCTGCTCTGCTGGGGGATAACATCTACAACTTTGGAGAGCTACTTGCCCATCCA ATAGTGAGTACACATCAAATTTTTTGGATTGCCTGTTCAATTTTTTTTACCTCACTCTTTTTTCTTTTAATATACTATGT TGATTGACATGATCTATAATGCTCTCTGACAGATTAAGAGCCTTCTGGGGACAAAGGTGGAGTGGCTGTACTATATTTTG CAGGCATTCAATTCTGGTGATTTGGTTCGATATCAAGAACTATGTCGGGTTCATAATGCTGCTTTAAGGGCTCAACCAGC ACTAGTTCAAAATGAACAGAGGTTATTGGAAAAGATCAACATTCTCTGCCTGATGGAGATTATATTCAGGTATGTGCATC CATTAGATTGTAAAATTATAAATTCGGGAGATGAATTTCCAACTTGAGCTGATTGTGGTTTGCTTGCAGTCGGCCTTCGG AAGATCGAACTATTCCCCTGGCTGTAATTGCAGAGCGTACAAAACTTTCTATAGAGGATGTGGAGCATCTTCTTATGAAG AGCCTATCTGTAAGTTACTGAGAAAAAAGTTACCTTCAAAGTTTTCATGATTTTCTATCATAACCATCTTTAAGTAATAC ACTTCAAAACCTATGGGTTTGGGCAACATAAATTATTCTATTCAAATTATATTTAGTTATTCTTGATGAACGTGCTTCTC GTTTGTCAATTTGTTCATATATTATTTTCTAGTAAGCATTGATCTCCGATGACCTTTAATCATGAATTGTAAGCATGCAT TCTATTTTGCTGTGTGTGCACTACATCCTAAATGATGTTCCTTGCAACTCTTGAGCTTCTGTTGACACCATGTCATCAGT TTAAGAATTGTGGTGTTTCTTGATTATTACAGGAAAAAAATTTAGTGGATTCTGTTTGGTTCAAGACTGAAGAGCTTTTC ACTTTGTTGCATTATAATCTAGTTCTGAAGAGTTTTTATTTGTCCATCCTTTGTTAGGAGAAAAGCTATTGGAACTATGA TTTGAGTTCTAAAGCTTGTATGTGGAAATATTTTGTTGCAGGTTCATCTAATTGAGGGTATAATTGATCAAGTTGAAGGC ACAGTGCATGTTTCCTGGGTGCAGCCAAGAGTTTTGGGCATTCAACAGATCAAATCCTTACGTGATCGACTGGACAGTTG GACAGGAAAAGTACACACCGCATTGTTGTCCATCGAGGCGGAAACACCTGATCTAATTGGATCATGACTTTTCCTGGTTT GTTTTGTTCACTGCCCATTGTAACAATTTCTCATGTTAAAGGGAAAACATCCTAAGGCGACAAAAGATGAAGAGACTTCC AAGTCACATGGGCAATATGCCAACTTTATGTGCTTCATTTGGTTTTGCCAGCTGCTTTTGAATGATTGATTGCTGGAAAG AGCAGCCTCTTGTACTTCACTTAGAAATTGTTGGTTCTATGGCCTGGAGACATGGTGAATCGGTTAGAAACATGCTGTTT TTACGCTTTAGAGTGATGATAAAAACTATGTACCTTTAAGTTTTTCTTAGATACGGCCATTTTCATTCACTTCAGAATTT CTTTTATTTAATTGAGCCAATCAGTTATTTTCTTTCACTTGATGTGCTTCAATTCCGACGCTATTGATCCTGCCATGGAT TAAATCTTTAGTTTCACTGGGTTCTTATCTAATGACTGATAAAATGGCATACCAAGGCTGTGATGGTTTTTTTGCTTTGT TTGCCAATCGGTGCACTAGCTGTGGAGGATTAGTGACAGGGTGTGAGCAGAATGAACACACTGTTGCCTTCAAAACCTCG TAGTTTGTACATGCTTTCATGTTATAAAGCTCGTACCGTCCTGGACTCCTGGTACTTAGAATAAGCAAACTATGCTCCTT AATGTTATAGGCCACTCCAAAGAGGTTTTACG
Download Genomic Sequence

CDS sequence (LotjaGi2g1v0339600.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCTGCTCTGCAATACTTGGATTCGCTTCGCAGCGCGCACCCGGAGCTTGACGATTGGTACAATTCTCTTGCGGATCT GTACCAGAAGAAGCTCTGGCATCAGCTCACTCTCAAGCTCGAGCAGTTTCTCGCTCATGCTGTTTTCCAGGCTGGCGATG CTTTGATTCAGCTGTACCACAATTTCATCACAGACTTTGAGACTAAAATCAACCTTCTCAAGCTTGCACATTTTGCTGTG ATGGTTTCTCGGCAGTATTCTGAGAAAGAAGCTGCCGTTGGTTATCTTGATGGGATCATTGAGAAACTGCAAGCCACTAA AGAACAGCGCATAGAAGAACCTATTCTATACATTAAGATGCAAATAGCCATATTTAAGCTTGAGCAAGGTGATCAAAAGG AATGCAAGAAGCTTCTGGAAGATGGAAAGAGTACACTAGACAGCATGACAGATATCGATCCAACTGTGTATGCTAGCTAT TACTGGGTATCTTCTCAGTTTCATAAATCCCGCCAGGAATTTGCTGAGTTCTACAAAAGTGCTCTTCTCTATTTGGCATA CACAGCAGTGGAATCTCTCTCCGATTCATTCAAGCTGGATTTGGCTTTTGATTTGTCCCTTTCTGCTCTGCTGGGGGATA ACATCTACAACTTTGGAGAGCTACTTGCCCATCCAATAATTAAGAGCCTTCTGGGGACAAAGGTGGAGTGGCTGTACTAT ATTTTGCAGGCATTCAATTCTGGTGATTTGGTTCGATATCAAGAACTATGTCGGGTTCATAATGCTGCTTTAAGGGCTCA ACCAGCACTAGTTCAAAATGAACAGAGGTTATTGGAAAAGATCAACATTCTCTGCCTGATGGAGATTATATTCAGTCGGC CTTCGGAAGATCGAACTATTCCCCTGGCTGTAATTGCAGAGCGTACAAAACTTTCTATAGAGGATGTGGAGCATCTTCTT ATGAAGAGCCTATCTGTTCATCTAATTGAGGGTATAATTGATCAAGTTGAAGGCACAGTGCATGTTTCCTGGGTGCAGCC AAGAGTTTTGGGCATTCAACAGATCAAATCCTTACGTGATCGACTGGACAGTTGGACAGGAAAAGTACACACCGCATTGT TGTCCATCGAGGCGGAAACACCTGATCTAATTGGATCATGA
Download CDS Sequence

Protein sequence (LotjaGi2g1v0339600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MAALQYLDSLRSAHPELDDWYNSLADLYQKKLWHQLTLKLEQFLAHAVFQAGDALIQLYHNFITDFETKINLLKLAHFAV MVSRQYSEKEAAVGYLDGIIEKLQATKEQRIEEPILYIKMQIAIFKLEQGDQKECKKLLEDGKSTLDSMTDIDPTVYASY YWVSSQFHKSRQEFAEFYKSALLYLAYTAVESLSDSFKLDLAFDLSLSALLGDNIYNFGELLAHPIIKSLLGTKVEWLYY ILQAFNSGDLVRYQELCRVHNAALRAQPALVQNEQRLLEKINILCLMEIIFSRPSEDRTIPLAVIAERTKLSIEDVEHLL MKSLSVHLIEGIIDQVEGTVHVSWVQPRVLGIQQIKSLRDRLDSWTGKVHTALLSIEAETPDLIGS
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR10539:SF4
1 386 386 1.1E-242 –
PANTHER
PTHR10539
1 386 386 1.1E-242
IPR035298
Gene3D
G3DSA:1.25.40.570
170 348 179 6.3E-61 –
ProSiteProfiles
PS50250
174 347 174 27.176
IPR000717
Pfam
PF01399
238 343 106 5.0E-11
IPR000717
SMART
SM00753
272 365 94 3.9E-15 –
SMART
SM00088
272 365 94 3.9E-15
IPR000717
SUPERFAMILY
SSF46785
274 348 75 4.35E-7
IPR036390

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi2g1v0339600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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