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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0340400 |
| Transcript ID | LotjaGi2g1v0340400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Secretory carrier-associated membrane protein; TAIR: AT1G32050.1 SCAMP family protein; Swiss-Prot: sp|Q9C6X2|SCAM4_ARATH Secretory carrier-associated membrane protein 4; TrEMBL-Plants: tr|I3SNS8|I3SNS8_LOTJA Secretory carrier-associated membrane protein; Found in the gene: LotjaGi2g1v0340400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:81733645..81739384) extracted from Lotus japonicus Gifu genome v1.2.
AGTTACTTTTTTCTCCCAAATCTAAATCCACATCCCGCGTTTCAAACAAGCGATTCCAAAAGCGAGAAAAGTGCGTGCGT TCGCATTGTTCACTCACCATACGCACTTCCATTTTCATCTCCCACCGTCGCATTTTCTTCGGATCTGAAATTCCTCACCA TGAATCGCCACCACGATCCCAATCCATTCGACGAAGACGAAGTCAATCCCTTCTCGGTAATCACTCACTCTCTTTCCATT TCTATTTTTGGTTGATTCTCACTCAGATCCAGTCTTGTTTCTCCCTAAATTTGGGGCTGGAAATTGTAATCTACGAAATT GGAACTGTTTATGTGACTCGTCATTTGATTTGGATCTGAATTATCTATTTCACGTGATTATAGCTTCGTTTTGCTTTCTT TTTCTGCGGAAACGGTTGATTTAGAGTGTGTGCTGAATCGGCACTGAGATGACAGTTTAGTGCTGAATTTAGTGTGGATG TTTGAGGAGGATTTGGATCTGGAAATATGTAGGTTAGCCATTTCGGTTGTGTTGTTTCCTGAACTGGTTAATCGAGTGAA TGCATGCATTGCAGTGTGCGCGATGCGTTAAGTGGTTATTAAGTGCTTAGCTACAGTGTGGTGTTATTTTTCATTGTTAC GGATGGCTACGATTTCGTAACTTTCTTGGTCATTTGATAGTTGGAGAATTTTGGTAGAGTGGGAGTAACAAAACAATGGA AACGGTGAGTTAAGTGGAATTAGACGAAATGCGGTTTCTCGGTTGTGTTATAATCGTTGTAGTTGTTTTTGTTTGTAATG ATTGATGCAATGCCGCACAGTATAGAAGGAGTTATGAGGAGGTGCATGATGGAGTGTAGTTAAGTTAAGTAGGGCTTGTC AATGCCTCCCCTTTTGTGTTAGGTAACCATAACTTTGTGGAATCCACTTGATCAATGTATTATCTAGGCAAAGTATTCTG TGGTCCTTTAGACTTACATTCCTTAAAAGTTTGATAATATTTTTTCTGTATATAATAGATTGTTGCACATTAGAGTGATC TCTTGATAGGTTTGGTACTCCAGTGTTTCATTGAGTTTTCAGGGTGCTGTTTGTGTGAGTTTGCTTTCTACAGGAGTTTG CTTTCCATAGCAACATTGCCTTAATGTAATGGTATCACTTTTGGCAGAATGTAAACTATTTTTCGATCTGAGAGTGAGTT AGAAATCACCCAACTGCATTTTTGTAAGCTATTTATCAATCTGAAGCCTTGTAAATTCTTATGAACTAACGTTAAATTCT AATCATAAAACTCAGCTAATGAAATAATGTGGTCGTTATAACTTTTATCTAAAGGTTAAATTAAATTGGTAGTTTTGAAA CCCTTGGTATTTGATTTTGATGCCTTACTGTTTTGTTTAAATCTCAACATGGGATTATTATTGTATTTATTGGGGAAATA TTACAGAACGGTGCTGCTCCTGGATCTAAATCACGTATTCCACCATTGGCATCCGAACCACTGGGCTTTGGTCAAAGACA TGATGCTACAGTTGATATTCCTTTGGATACCACAAATGTAATATAATTTCTTATTAAGGGATTTTTTAAGACCTTTTTAA GATTCTTTTTGGGTGGCTGATTTTATTCTCCATGATGCTTATATAGGAGCCTAAAAAAAAAGGTCAAGAGCTAGCAGCTT GGGAAGCAGATTTGAAAAGGAGAGAAAAGGTTGGTTGAACAATTTTTTGTTGTTTCAGATTGTGTTTTTTTGTCATCCTC AACTGTCATATATTTTTATTTTCTTAAATGCTTGCATATACAAGTTTTTACTTCTGTTAATGTTTGTCAACTAGTATTCT TTGCTTTTGAGGATTTTTGACTCTTTCAAAATGCGTATGTAGGATTTAAAAAGAAGAGAGGATGCTGTTTCTAGAGGTGA ATGATGAGACCCCACAATACAAGCTTTTCAATTAAGTGTATTTTAATTGCATCTCTAAATTTATGCTGAGTCATTTTTTT GTGTGTTTCCAAAATATGTCTAACAGCTGGTGTGCCTGTTGATGATAAGAATTGGCCTCCGATTTTCCCAATTATTCACC ATGATATTGCCAATGAGATACCGGTTCATGCTCAGAGGCTGCAATATTTGGCCTTTGCAAGTTGGTTAGGTATGATAGCT TAATTATGTTATATTGTTATCTAATTATTAATTTGTCGGTTGATTGATTGCCCTTTACTAATTATATTTCCTTCATTGCC CTTACTCCAATGCTTCTTCTCCTCTCATAAACACTAATACTCCCTGTAGAAATCTTGTTTTTTTTTTCACATCTTCCATT CTATTATTTTATCCTGTGTCTAATTATTTATTCTTTCATTTTTTTAATATCCATGCAGGAATTGTTCTCTGCCTTGTTTT TAATGTAGTTGCTGTGATGGTCTGTTGGATCAGAGGCGGTGGTGAGCTAATTCTAACAATCTCAAGATATTGCCAGTTCT CTAGTTTGATGATGTGGTTTGGACCTTAGTCTGAAGTTTGCAATGTGCAGGTGTTAAAATTTTTTTCCTTGCGGTGATCT ATGCTCTACTTGGTGTTCCCCTTTCATATGTGCTTTGGTACAGGCCCCTTTATCGTGCTATGAGGTAAAGTATATTGTTT CCCCCTTATATTTACTAGCATTTGAACACATCCTAAACACAAAGGGCTTAGGTCTCTAATAATTGGGTCCCTTCAAGTTA AAGATAAAGGAGACATTATATGGTTATATGGACTAACCCCCTTCTAACTTGATTTTACATAATCATGATTGTTGTTTTTT AATGTTTCTAATATGCAGGACGGATAGTGCACTGAAGTTTGGCTGGTTTTTCATGTTCTACTTGGTATGTCACTGTCAAT CTATTACACAATACTTCAAGCTACCTAACAAGTGACTTGTTAATTCTTCTGCTCATTGTTTTGGCTTGATGCAGCTTCAT ATTGCATTTTGCATCTTTGCTGCAATTGCACCTCCAGTTGTTTTTCATGGGAAATCATTAACGTAAGTCCTACTTGTTAT GTTACAATGTTTACTTAACTGAATTTCCATGAGGTTTTTAATCTCTTTATCTGGACAGAATTGGGTGTATTCTTGATTGA AGAATAGTTCAAAAGACAGATCACCAAAAGGAGACAAGTTTTACTAACTTAGTGTTTGCTAGTTTGCACTTTCCTTGTGA TGCTTTTCCATTTTACTTATTTTTTGGTTTGGGGGGGGGGGGGGATAGTATAAATGGATGTTCCGAAACCAAAAGCTGTC TCTTATTGGCTTAATCAGCACTATTCAAAAATGTCATTTAAAATAATATTACAAAAGGAAGAAAATGATAGGATCCCTGC AAGTTTTTGTGGTGATTTCAATGAATAGTGAATACCTTCTGTTGTTAATATGCAACACAATTACTGTAGTTATTATTATC TAGTGTAATTACCATTACCAATAGGATTTGGTTTCTGTAATTTCATGTAATTAATTAGGACATATTACCTGTAATTAAGT AGTTTCCTTAATTAGGACGTGCTAGTGTTTTGCTCTATGTACTGTACTTCTTGTACAGTTTCAATATCAGAAAATAATAC TTCTTTTAAGTTATATTTCTTTCAACTCCTTTTACTCACTGTATAAGCACAAGTAAGCAATGAAACAATGTTGTGGGCGA TTTGTTTACTTGTTTTATCATATTATTCAAATTGACGTGGGAAGGAACTGTGGTGGCTCTAAATTTTCTTGAGTTCCCCT GAACCCATTTTGGTACTTTTGATTTGTTAAAATTTGGATGGAATTTTTTGCTGTTATCTTACGGTTATCCTTTTACTAAA ATTTATGTATTAGTAAATGTATTGAAAAAGTGTATATTGCTTTTCTGTTACAATTAAATTAATTCTTTTGAAATTACAGG GGCATCCTTGCAGCAACTGACGTCTTCTCAGACCATGTATTGGTTGGGGTAAGTTGTAGTCTCTGGGCATTTTTGCATTT AGTTTCTTTCTGGGAGAACTTATTTGCAATGTTTTTTTGAATATTGTGAATAGACAAATTAGACACATTCACTGATGGAA TACCAGGTTCTGATGTTGTGCAATTTATATATTTATTTTAATATTTTAATTGAGAGAGTAAATACGCATGAATTGAAGGC TATTATTCTTCTCAAGCTGATTGCCCCCTTTTCACATAGAATTACATCTTATGTTTGCATGAATGATAGTTAGTGTTATG GAGACAGCTGCAGTTAAATTTGATATATTACTTGCGCTTGACTTACTTTGAGAAAATAAGTTAGTGATAACCAAAGAGCT GTGTGGACTGTTAATTTAGATGAAAGGGATGTAAAATTTGTGGAAATTGGACATGTATGTAACTAGGTTGGGGGTGTCCA CTGCATAGATTGTGTAAGCTATGGGTGTTGTTAGCTTGCTGTTGTATTAAGTTAATAAGTTTTATGAGATCAAAATGATC TGGAGGGCCTTGAACAAGCATAAGATATGGGAGAAACTTTTTATCACAGTTTGATAACTTGTTGAAGTACCTGAAAAAAT GATAATTTCCTAAATGTTATTGTGAATTTCTTATATCTTTTATGTGGAAAAAAAGTTTCGTACTCCAGTAGCCCTTTGCA TCCTATTGATGTTTGGTAATGGTATTGTTTCAGATATTCTATTTGGTTGGATTTGGCCTGTTTTGCTTGGAGTCTCTTCT AAGCTTGTGGGTAATTCAGGTGAGGGAATTAAACTTGAATGTCTAATGTATGCTTTAAAATATACTATAAGATTATGCAC CCATGAATGCCGTATTTATATGAAATTTGCCTTATATGATCACCATGTTAATGTCACATGATTAACTGCTGCATTTGTTT AACTTTTTTCTCTTACGTATGCAGAAAATATACCTGTTTTTCCGGGGGCATAAGTGAGGCTACTCAGGATTTTGATCCAT CGGCTTTTATGATATCAGTCACTTCCCGGCGTGGCTTAGTATATTCTTTCTTTTTGTCTATCCTCTTTTTTCGCTTGCAA TATTTTCGTGTGATATTGTTTGTTGTTGTAGTCTAGTTCTTGTTACAGAGCTTAGTGTGTAATTTCCTGTGTAATGAATT CTGTGAAGTTTAGTAATTTTCTAGTGTAACAATAACCAAGCTTTGCTTTCGATAAGCATATATGTAGTGGATTTCCATAA GGAATTATTGTAGTGCTATTGTAGTTGTGAATAGTGACACCCCTCGGAGGTTTTCTATTTGTAAGACAGCACTGATGCAA ACACTTTAGTTAAAATTCATGTAGGATCTATTCAATTACATGGTCTCACTTCTAATGTGAGTAGTGATTGAGTTGTGCTA GTCTTGAACCGGGGCAACCAAAGTATATTCCCTTATATTCTTTTTTTTCAAAACCACATTGTTGTTGCCTTGTTAGCTCC TTGGGGTCCCCTAATGTGGACCCCTAAAAAAGATGTCTAAATTTGCACCCCTTAATTTTACATGTTATAGCAGGTCACAT TGTTTTTGCTCATAAAAAATCAGTTTGTTTCCAAAAGAAATTAATAAGTTAGTGTTTCATTCCAAAAAAACTTTCTCCCT AACCCATACCTCTGTCCCTCAACTCACTACTTCCAAGTTCCAACCATAAAAACAGCCTTCGTCGTACCAGCCACCGAAGC CCCTCTATCTCCTTCCTCCTTTAGAGTAATATTTTGACCAGGTCGAATCCCAGCCACCAC
CDS sequence (LotjaGi2g1v0340400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAATCGCCACCACGATCCCAATCCATTCGACGAAGACGAAGTCAATCCCTTCTCGAACGGTGCTGCTCCTGGATCTAA ATCACGTATTCCACCATTGGCATCCGAACCACTGGGCTTTGGTCAAAGACATGATGCTACAGTTGATATTCCTTTGGATA CCACAAATGAGCCTAAAAAAAAAGGTCAAGAGCTAGCAGCTTGGGAAGCAGATTTGAAAAGGAGAGAAAAGGATTTAAAA AGAAGAGAGGATGCTGTTTCTAGAGCTGGTGTGCCTGTTGATGATAAGAATTGGCCTCCGATTTTCCCAATTATTCACCA TGATATTGCCAATGAGATACCGGTTCATGCTCAGAGGCTGCAATATTTGGCCTTTGCAAGTTGGTTAGGAATTGTTCTCT GCCTTGTTTTTAATGTAGTTGCTGTGATGGTCTGTTGGATCAGAGGCGGTGGTGTTAAAATTTTTTTCCTTGCGGTGATC TATGCTCTACTTGGTGTTCCCCTTTCATATGTGCTTTGGTACAGGCCCCTTTATCGTGCTATGAGGACGGATAGTGCACT GAAGTTTGGCTGGTTTTTCATGTTCTACTTGCTTCATATTGCATTTTGCATCTTTGCTGCAATTGCACCTCCAGTTGTTT TTCATGGGAAATCATTAACGGGCATCCTTGCAGCAACTGACGTCTTCTCAGACCATGTATTGGTTGGGATATTCTATTTG GTTGGATTTGGCCTGTTTTGCTTGGAGTCTCTTCTAAGCTTGTGGGTAATTCAGAAAATATACCTGTTTTTCCGGGGGCA TAAGTGA
Protein sequence (LotjaGi2g1v0340400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNRHHDPNPFDEDEVNPFSNGAAPGSKSRIPPLASEPLGFGQRHDATVDIPLDTTNEPKKKGQELAAWEADLKRREKDLK RREDAVSRAGVPVDDKNWPPIFPIIHHDIANEIPVHAQRLQYLAFASWLGIVLCLVFNVVAVMVCWIRGGGVKIFFLAVI YALLGVPLSYVLWYRPLYRAMRTDSALKFGWFFMFYLLHIAFCIFAAIAPPVVFHGKSLTGILAATDVFSDHVLVGIFYL VGFGLFCLESLLSLWVIQKIYLFFRGHK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 268 | 268 | 4.4E-161 | ||
| MobiDBLite | 1 | 63 | 63 | - | – | |
| Phobius | 1 | 121 | 121 | - | – | |
| PANTHER | 1 | 268 | 268 | 4.4E-161 | – | |
| Coils | 65 | 85 | 21 | - | – | |
| Pfam | 96 | 266 | 171 | 2.5E-54 | ||
| Phobius | 122 | 149 | 28 | - | – | |
| TMHMM | 125 | 147 | 23 | - | – | |
| Phobius | 150 | 154 | 5 | - | – | |
| TMHMM | 152 | 174 | 23 | - | – | |
| Phobius | 155 | 174 | 20 | - | – | |
| Phobius | 175 | 185 | 11 | - | – | |
| Phobius | 186 | 213 | 28 | - | – | |
| TMHMM | 187 | 209 | 23 | - | – | |
| Phobius | 214 | 232 | 19 | - | – | |
| Phobius | 233 | 257 | 25 | - | – | |
| TMHMM | 235 | 257 | 23 | - | – | |
| Phobius | 258 | 268 | 11 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Protein transport | The directed movement of proteins into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
Expression pattern of LotjaGi2g1v0340400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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