Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

LotjaGi2g1v0340500.1

Overview

Field Value
Gene ID LotjaGi2g1v0340500
Transcript ID LotjaGi2g1v0340500.1
Lotus japonicus genome version Gifu v1.2
Description Phosphoribulokinase; TAIR: AT1G32060.1 phosphoribulokinase; Swiss-Prot: sp|P27774|KPPR_MESCR Phosphoribulokinase, chloroplastic; TrEMBL-Plants: tr|A0A151SI13|A0A151SI13_CAJCA Phosphoribulokinase; Found in the gene: LotjaGi2g1v0340500
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr2:81742546..81745965) extracted from Lotus japonicus Gifu genome v1.2.

AAGAATGTCAGTTGTGTGTCTATATTATTTGCATGTGTTTGCATGTCTGAGTATCATTACCCAAATAAAGTTTCCTTCTA ATTTGTCCAAAACAAGGGGTAGTCACAGAAACAAAAAAAACTAGAAAATACAACCTCAGTTTTCCCCATTTCTTTTCCTG CTGAAATGCCTTTGTTTTGGTTGTAATTCCACCTCATATTATGTGTGTTCCAAACGTCTTCTTGAGATGTCCCTTACCAT AATCCTCAAACAGAAGCCAACTTAAACTCAGTGCTTCTCTTAACATTCTCTTTTAACATATTTCTGTAGATAGAGGGAGA GTGAGAGGGAGAGAATGGCAGCTTTTACTGTCTACTCTACACAATCTCTGAGATCAAATTGCTCCATCGCCACCCCATCA AAATCCCATGTGGGATTTCACCAAAAACAACAGTTAGTTTTCTACAAGAGAGGTAGTGACAGTACTAGCACCAGCAGAAG GTATGTGATAACATGTGCAGGTGGTGACCAACAGACAATTGTGATTGGTCTAGCTGCTGACTCAGGATGTGGGAAGAGCA CCTTCATGAGGAGGCTCACAAGTGTGTTTGGAGGAGCAGCAGAGCCACCAAAGGGTGGGAACCCAGATTCCAACACTCTC ATCAGTGACACCACCACTGTGATATGTTTGGATGATTACCATTCACTTGATAGAACTGGTAGAAAGGAAAAGGGTGTCAC TGCACTTGACCCAAAAGCTAATGATTTTGATCTCATGTATGAGCAAGTTAAGGCAATTAAGGAAGGAATTTCTGTTCAAA AGCCTATTTATAATCATGTTACTGGTCTTTTGGATCCACCAGAGCTTATTAAACCTCCCAAAATCTTGGTCATTGAAGGT CTTCACCCAATGTAAGTGTCATTTAACAATTTGTGTTTTACTAGTATTAGATCTATTGTGACTAACTCTGCAAGTGTTTT CTTATCCCGGCAACTTTTACTGTCGTGAATTGTTCTGCATGTTGAATCTATAGAATCAAACTGGGGATGTTTCAAATGTT GGAAATTCTCTCACTTTTCTATTCTTTTCATTGAAGAGAATTTTGATCATTTTAGCTGATACCTTATCTATATTTTATTG TTTGTGTGGTGGAGGAATTTGCTAGTGATATGGTGGGCCAACATGCATACATATGTTCTTTTCTACTCTATGGATTGATA GCAAAGGATATTTCAATACATGGGGCACAAAATCTTCCTAGCTTTGACCTTTTTCATAATCCTGTAATGTAGCATTAGGC TAATAAAATATTAGGATTCATTTGAAAGGGATTAAGTGCACGGATAACTATTTTTTTTTATATAATTAAATTATTAATTT GTCCTGAATCCTGATCACCTTTCTCACTCTTAATTAGTTCCTAACTCCCTAGATATGGCTGATCTACCAAAAAAAAAAAA TCGATAATATTTTAATAATGTACATCTCTGTTTTTATTTTTTGTAATGTCTATCTTGACTCTTGAGCATAGTTCATATTA TGTTCAATTTTTTAATACTTAATTATGTAAAATACTTAATCAAATTGTTCACAACAATATGTTCTTGTGAATTATAACTG GAGAAGAAAAATATTGTGCCTTGTGGCACATAATTGTGTATCTTCTCACCACATTAGCTTATTTGATTGCCTCTTCCTTG CATGCAGGTATGACCCTCGGGTCAGAGAACTGTTGGACTTTAGCATCTACTTAGACATTAGCAATGAGGTGAAATTCGCT TGGAAAATTCAGGTAATTAAAGACATAGCCACAGAGTTCAAAAGACTTGTACAATTCAAAGTTTTCCTAATCTTCTCCCT TACTATGTATGACTGATCTGATGACTATGTGACAAATTCAGAGAGACATGGCAGAGCGTGGACATAGTCTTGAAAGTATC AAGGCTAGCATTGAAGCAAGAAAGCCTGATTTTGATGCTTATATTGGTAATCAATTAATATTATATTTGGAAATCATTCT ACAATTATTTCTAAAGGCAAAATCAATTCTGAGAATAAGCTTTTCTATGAAGCTTATGGGTCACATAATTGATTCTAACA AAAAAAAAACTGATCAAAACATGCTATAAGACTCCAACTTCTGGAATTCAAAAAAAAAAACTCATCCCAAATAATAGTCT TTCAAGTTGAAGTTTTCTTTTCTTAGGCTCAAATTTGCAAGTTCTTAATTAACTTGTTATGCAAATGCTAACTTTCTTTT AAACTTGCTGTTCTTCACAGATCCACAAAAGCAATATGCAGATGCAGTGATAGAAGTGTTGCCAACCCAACTGATTCCTG ATGATAATGAAGGGAAGATTTTAAGAGTGAGGTTAATACAGAAAGAGGGGGTGAAGTACTTTAGCCCTGTTTACTTGTTT GATGATGGCTCCACCATTTCTTGGATACCATGTGGAAGGAAGCTTACATGCTCTTACCCTGGCATCAAGTTCTTCTATGG ACCAGACACTTACTATGGAAGTGAGGTACCAATTACTTAATCTAACCTCGAAAGCTTCTATGACATACTATTGTTGAGAA GTTTCACATTGAACAAATAAGTCCTACAAAGAATAGAACAACCCTCACCTCTAAGCTAGTTTTTGGGATAGAGTTAAGCC TAACCCGAATTCTAAAAGCTATAAATCAAATATTCTTTTTTTTCTCACTTTATTTACCCAATCACTTAACTTTTGTTTAT CTTTTCATGCTTTCCTTTTTATTTGTGTTTAACAGGTGTCAGTTGTGGAAATGGATGGACAATTTGACAGATTAGATGAA CTAATATATGTTGAGAGCCACCTAAGCAACCTCTCTTCCAAGTTCTATGGAGAGGTTACTCAACAAATGTTGAAGCATGC TGATTTCCCTGGTAGCAACAATGGGACAGGTCTCTTCCAAACCATAGTTGGTTTGAAGATAAGAGATCTTTATGAGCAGA TACTAGCCAGCAGGGCTGAGACTCCAGTAGGAGCAGCAAAAGCTTAGGAACCTGCCTGCCTTATATATAGTTATACATAT TGGACAAGGCAGTCATTGAGTTCCCAAAATCATTTTCTTAATTTTCCAAAATTTCTGTCTTTCATGTGAGTTTGTGTATT ATTGTTAGGCTGTTCTTCAATGTAATGAAAAGACTCTGCATGTGTACTTATACTCTTAATACAGAGAAGAAATAGCAGGG ATGAGATTCAGTTATATTGATTCCAGTGTTGTTAATGGCGGATAAGTGAGAGAAAAATTATTAAATTAGTGTATAGATGG AAAAAAATTAGAATCTAATGCATAGTTTTCTAAAATAACAAATTATGGGTAAAACTAATATCGTTATTAATACTTCACAA AACATAAATTTATATTAATTTAAACAAAATGATAAGTTATACATTGTGTGATCAAATCCT
Download Genomic Sequence

CDS sequence (LotjaGi2g1v0340500.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCAGCTTTTACTGTCTACTCTACACAATCTCTGAGATCAAATTGCTCCATCGCCACCCCATCAAAATCCCATGTGGG ATTTCACCAAAAACAACAGTTAGTTTTCTACAAGAGAGGTAGTGACAGTACTAGCACCAGCAGAAGGTATGTGATAACAT GTGCAGGTGGTGACCAACAGACAATTGTGATTGGTCTAGCTGCTGACTCAGGATGTGGGAAGAGCACCTTCATGAGGAGG CTCACAAGTGTGTTTGGAGGAGCAGCAGAGCCACCAAAGGGTGGGAACCCAGATTCCAACACTCTCATCAGTGACACCAC CACTGTGATATGTTTGGATGATTACCATTCACTTGATAGAACTGGTAGAAAGGAAAAGGGTGTCACTGCACTTGACCCAA AAGCTAATGATTTTGATCTCATGTATGAGCAAGTTAAGGCAATTAAGGAAGGAATTTCTGTTCAAAAGCCTATTTATAAT CATGTTACTGGTCTTTTGGATCCACCAGAGCTTATTAAACCTCCCAAAATCTTGGTCATTGAAGGTCTTCACCCAATGTA TGACCCTCGGGTCAGAGAACTGTTGGACTTTAGCATCTACTTAGACATTAGCAATGAGGTGAAATTCGCTTGGAAAATTC AGAGAGACATGGCAGAGCGTGGACATAGTCTTGAAAGTATCAAGGCTAGCATTGAAGCAAGAAAGCCTGATTTTGATGCT TATATTGATCCACAAAAGCAATATGCAGATGCAGTGATAGAAGTGTTGCCAACCCAACTGATTCCTGATGATAATGAAGG GAAGATTTTAAGAGTGAGGTTAATACAGAAAGAGGGGGTGAAGTACTTTAGCCCTGTTTACTTGTTTGATGATGGCTCCA CCATTTCTTGGATACCATGTGGAAGGAAGCTTACATGCTCTTACCCTGGCATCAAGTTCTTCTATGGACCAGACACTTAC TATGGAAGTGAGGTGTCAGTTGTGGAAATGGATGGACAATTTGACAGATTAGATGAACTAATATATGTTGAGAGCCACCT AAGCAACCTCTCTTCCAAGTTCTATGGAGAGGTTACTCAACAAATGTTGAAGCATGCTGATTTCCCTGGTAGCAACAATG GGACAGGTCTCTTCCAAACCATAGTTGGTTTGAAGATAAGAGATCTTTATGAGCAGATACTAGCCAGCAGGGCTGAGACT CCAGTAGGAGCAGCAAAAGCTTAG
Download CDS Sequence

Protein sequence (LotjaGi2g1v0340500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MAAFTVYSTQSLRSNCSIATPSKSHVGFHQKQQLVFYKRGSDSTSTSRRYVITCAGGDQQTIVIGLAADSGCGKSTFMRR LTSVFGGAAEPPKGGNPDSNTLISDTTTVICLDDYHSLDRTGRKEKGVTALDPKANDFDLMYEQVKAIKEGISVQKPIYN HVTGLLDPPELIKPPKILVIEGLHPMYDPRVRELLDFSIYLDISNEVKFAWKIQRDMAERGHSLESIKASIEARKPDFDA YIDPQKQYADAVIEVLPTQLIPDDNEGKILRVRLIQKEGVKYFSPVYLFDDGSTISWIPCGRKLTCSYPGIKFFYGPDTY YGSEVSVVEMDGQFDRLDELIYVESHLSNLSSKFYGEVTQQMLKHADFPGSNNGTGLFQTIVGLKIRDLYEQILASRAET PVGAAKA
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR10285:SF150
18 407 390 3.3E-225 –
PANTHER
PTHR10285
18 407 390 3.3E-225 –
Gene3D
G3DSA:3.40.50.300
58 293 236 3.7E-61 –
SUPERFAMILY
SSF52540
60 332 273 3.93E-36
IPR027417
Pfam
PF00485
63 261 199 4.3E-78
IPR006083
CDD
cd02026
63 351 289 0.0 –
PRINTS
PR00478
68 85 18 1.0E-35
IPR006082
PRINTS
PR00478
177 195 19 1.0E-35
IPR006082
ProSitePatterns
PS00567
212 225 14 -
IPR006082
PRINTS
PR00478
212 229 18 1.0E-35
IPR006082
PRINTS
PR00478
230 253 24 1.0E-35
IPR006082

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005524
Molecular function ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
Subterm of
GO:0005975
Biological process Carbohydrate metabolic process The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
Subterm of
GO:0008974
Molecular function Phosphoribulokinase activity Catalysis of the reaction: D-ribulose 5-phosphate + ATP = D-ribulose 1,5-bisphosphate + ADP + 2 H(+).
Subterm of
GO:0016301
Molecular function Kinase activity Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule.
Subterm of

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi2g1v0340500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…